Prkag1 (protein kinase AMP-activated non-catalytic subunit gamma 1) - Rat Genome Database

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Gene: Prkag1 (protein kinase AMP-activated non-catalytic subunit gamma 1) Ictidomys tridecemlineatus
Analyze
Symbol: Prkag1
Name: protein kinase AMP-activated non-catalytic subunit gamma 1
RGD ID: 12444654
Description: ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); AMP-activated protein kinase activity (ortholog); INVOLVED IN regulation of catalytic activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5'-AMP-activated protein kinase subunit gamma-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,345,695 - 66,360,254 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,804,571 - 6,819,077 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,804,571 - 6,819,096 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Prkag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,345,695 - 66,360,254 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,804,571 - 6,819,077 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,804,571 - 6,819,096 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRKAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,002,274 - 49,018,776 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,002,274 - 49,018,807 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,396,057 - 49,412,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,682,322 - 47,698,859 (-)NCBINCBI36Build 36hg18NCBI36
Build 341247,682,322 - 47,698,859NCBI
Celera1248,190,841 - 48,207,378 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,427,570 - 46,444,145 (-)NCBIHuRef
CHM1_11249,361,849 - 49,378,423 (-)NCBICHM1_1
T2T-CHM13v2.01248,964,449 - 48,980,948 (-)NCBIT2T-CHM13v2.0
Prkag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,710,678 - 98,729,354 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,710,678 - 98,729,402 (-)EnsemblGRCm39 Ensembl
GRCm381598,812,797 - 98,831,508 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,812,797 - 98,831,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,643,228 - 98,661,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,640,831 - 98,659,514 (-)NCBIMGSCv36mm8
Celera15100,962,240 - 100,981,052 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.73NCBI
Prkag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,842,058 - 131,859,484 (-)NCBIGRCr8
mRatBN7.27129,963,105 - 129,980,532 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,963,105 - 129,980,561 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,770,283 - 131,787,868 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,995,841 - 134,013,427 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,908,348 - 133,925,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,489,499 - 140,506,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,489,492 - 140,546,908 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,999,618 - 115,017,043 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,582,341 - 137,599,762 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,658,778 - 137,676,199 (-)NCBI
Celera7126,451,833 - 126,469,269 (-)NCBICelera
Cytogenetic Map7q36NCBI
Prkag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,834,550 - 7,850,379 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,834,550 - 7,850,412 (-)NCBIChiLan1.0ChiLan1.0
PRKAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,166,211 - 45,182,902 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,162,975 - 45,179,663 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,731,899 - 39,748,620 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,611,532 - 40,628,263 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,611,532 - 40,628,263 (+)Ensemblpanpan1.1panPan2
PRKAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,556,433 - 5,570,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,556,549 - 5,570,235 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,686,945 - 40,701,155 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,607,494 - 5,621,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,607,683 - 5,621,736 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,571,478 - 5,585,679 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,561,427 - 5,575,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,079,277 - 41,093,492 (-)NCBIUU_Cfam_GSD_1.0
PRKAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,033,058 - 15,049,735 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,033,051 - 15,049,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,443,377 - 15,522,471 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRKAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,243,199 - 45,262,143 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,243,823 - 45,260,396 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,883,310 - 200,900,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prkag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248163,182,708 - 3,185,602 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014659   ⟹   ENSSTOP00000013131
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365126,804,571 - 6,819,077 (-)Ensembl
RefSeq Acc Id: XM_005324901   ⟹   XP_005324958
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,345,695 - 66,360,254 (+)NCBI
SpeTri2.0NW_0049365126,804,571 - 6,819,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280717   ⟹   XP_040136651
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,348,145 - 66,360,254 (+)NCBI
RefSeq Acc Id: XM_040280718   ⟹   XP_040136652
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,348,167 - 66,360,254 (+)NCBI
RefSeq Acc Id: XM_040280719   ⟹   XP_040136653
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,345,695 - 66,360,254 (+)NCBI
RefSeq Acc Id: XM_040280720   ⟹   XP_040136654
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,345,735 - 66,360,254 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005324958   ⟸   XM_005324901
- Peptide Label: isoform X5
- UniProtKB: I3MNC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136653   ⟸   XM_040280719
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040136654   ⟸   XM_040280720
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040136651   ⟸   XM_040280717
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040136652   ⟸   XM_040280718
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000013131   ⟸   ENSSTOT00000014659
Protein Domains
CBS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014648 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014659.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.580.10 UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/TrEMBL
  CBS_dom_sf UniProtKB/TrEMBL
NCBI Gene Prkag1 ENTREZGENE
PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT UniProtKB/TrEMBL
  PTHR13780:SF38 UniProtKB/TrEMBL
Pfam CBS UniProtKB/TrEMBL
PROSITE CBS UniProtKB/TrEMBL
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF54631 UniProtKB/TrEMBL
UniProt I3MNC0 ENTREZGENE, UniProtKB/TrEMBL