Pcsk1 (proprotein convertase subtilisin/kexin type 1) - Rat Genome Database

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Gene: Pcsk1 (proprotein convertase subtilisin/kexin type 1) Ictidomys tridecemlineatus
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Symbol: Pcsk1
Name: proprotein convertase subtilisin/kexin type 1
RGD ID: 12437660
Description: ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN neurogenesis (ortholog); pancreas development (ortholog); peptide hormone processing (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered melanocortin system pathway; melanocortin system pathway; ASSOCIATED WITH Body Weight (ortholog); Dehydration (ortholog); Dwarfism (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuroendocrine convertase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,824,505 - 168,864,179 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,010,068 - 7,050,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,009,966 - 7,050,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pcsk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,824,505 - 168,864,179 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,010,068 - 7,050,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,009,966 - 7,050,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCSK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38596,390,333 - 96,433,248 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl596,390,333 - 96,434,143 (-)EnsemblGRCh38hg38GRCh38
GRCh37595,726,037 - 95,768,952 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36595,751,875 - 95,794,708 (-)NCBINCBI36Build 36hg18NCBI36
Build 34595,751,874 - 95,794,708NCBI
Celera591,608,060 - 91,651,008 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef590,916,038 - 90,958,959 (-)NCBIHuRef
CHM1_1595,158,671 - 95,201,600 (-)NCBICHM1_1
T2T-CHM13v2.0596,891,318 - 96,934,221 (-)NCBIT2T-CHM13v2.0
Pcsk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391375,237,407 - 75,282,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1375,237,945 - 75,282,980 (+)EnsemblGRCm39 Ensembl
GRCm381375,089,420 - 75,134,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1375,089,826 - 75,134,861 (+)EnsemblGRCm38mm10GRCm38
MGSCv371375,227,435 - 75,269,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361375,555,989 - 75,598,500 (+)NCBIMGSCv36mm8
Celera1377,413,324 - 77,455,835 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.63NCBI
Pcsk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr826,130,045 - 6,176,974 (+)NCBIGRCr8
mRatBN7.224,395,543 - 4,442,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl24,395,543 - 4,442,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx211,498,001 - 11,544,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.029,597,257 - 9,644,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.024,240,758 - 4,287,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0291,450,162 - 91,497,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl291,450,162 - 91,497,091 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,274,882 - 2,309,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,923,309 - 1,970,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.121,937,434 - 1,981,975 (+)NCBI
Celera2885,989 - 932,918 (+)NCBICelera
Cytogenetic Map2q11NCBI
Pcsk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,181,771 - 16,224,603 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541816,181,809 - 16,224,274 (+)NCBIChiLan1.0ChiLan1.0
PCSK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2418,947,427 - 18,989,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1517,101,051 - 17,143,521 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0518,917,488 - 18,960,102 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1519,064,004 - 19,106,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl519,064,004 - 19,106,486 (+)Ensemblpanpan1.1panPan2
PCSK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1313,233,342 - 13,276,921 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl313,233,594 - 13,274,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha314,573,263 - 14,616,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0313,112,863 - 13,155,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,112,897 - 13,155,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,076,913 - 13,120,227 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,073,463 - 13,116,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0313,272,840 - 13,316,211 (+)NCBIUU_Cfam_GSD_1.0
PCSK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2103,004,794 - 103,050,839 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12103,004,794 - 103,050,707 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap2qNCBI
PCSK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1490,246,413 - 90,289,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl490,248,598 - 90,289,089 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604938,898,564 - 38,941,574 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcsk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,994,172 - 15,036,412 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474314,993,436 - 15,036,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000010457   ⟹   ENSSTOP00000009384
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365237,010,068 - 7,050,468 (+)Ensembl
RefSeq Acc Id: XM_005326146   ⟹   XP_005326203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213168,824,505 - 168,864,179 (+)NCBI
SpeTri2.0NW_0049365237,009,966 - 7,050,300 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009384.3
GenBank Protein KAG3266339 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326203   ⟸   XM_005326146
- UniProtKB: I3MFI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000009384   ⟸   ENSSTOT00000010457
Protein Domains
P/Homo B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010450 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010457.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.850 UniProtKB/TrEMBL
  3.40.50.200 UniProtKB/TrEMBL
  6.10.250.3320 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/TrEMBL
  Kexin/furin UniProtKB/TrEMBL
  P_dom UniProtKB/TrEMBL
  Peptidase_S8/S53_dom UniProtKB/TrEMBL
  Peptidase_S8/S53_dom_sf UniProtKB/TrEMBL
  Peptidase_S8_Asp-AS UniProtKB/TrEMBL
  Peptidase_S8_His-AS UniProtKB/TrEMBL
  Peptidase_S8_Ser-AS UniProtKB/TrEMBL
  Peptidase_S8_subtilisin-rel UniProtKB/TrEMBL
  Proho_convert UniProtKB/TrEMBL
  S8_pro-domain UniProtKB/TrEMBL
  S8_pro-domain_sf UniProtKB/TrEMBL
NCBI Gene Pcsk1 ENTREZGENE
PANTHER NEUROENDOCRINE CONVERTASE 1 UniProtKB/TrEMBL
  PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED UniProtKB/TrEMBL
Pfam P_proprotein UniProtKB/TrEMBL
  Peptidase_S8 UniProtKB/TrEMBL
  Proho_convert UniProtKB/TrEMBL
  S8_pro-domain UniProtKB/TrEMBL
PRINTS SUBTILISIN UniProtKB/TrEMBL
PROSITE P_HOMO_B UniProtKB/TrEMBL
  SUBTILASE UniProtKB/TrEMBL
  SUBTILASE_ASP UniProtKB/TrEMBL
  SUBTILASE_HIS UniProtKB/TrEMBL
  SUBTILASE_SER UniProtKB/TrEMBL
Superfamily-SCOP Protease propeptides/inhibitors UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF52743 UniProtKB/TrEMBL
UniProt I3MFI9 ENTREZGENE, UniProtKB/TrEMBL