RHO (rhodopsin) - Rat Genome Database

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Gene: RHO (rhodopsin) Canis lupus familiaris
Analyze
Symbol: RHO
Name: rhodopsin
RGD ID: 12431654
Description: ENCODES a protein that exhibits 11-cis retinal binding (ortholog); G protein-coupled photoreceptor activity (ortholog); retinal binding (ortholog); INVOLVED IN absorption of visible light (ortholog); cellular response to light stimulus (ortholog); detection of light stimulus (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH alkaptonuria (ortholog); Coats disease (ortholog); cone-rod dystrophy (ortholog); FOUND IN membrane (ortholog); photoreceptor disc membrane (ortholog); photoreceptor inner segment membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: opsin; RHO1; rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant); rod opsin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,630,735 - 5,638,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,669,643 - 5,674,903 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,661,948 - 5,667,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,661,632 - 5,667,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,377,793 - 5,383,047 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,730,818 - 5,736,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,706,443 - 5,711,705 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8206388   PMID:9522129   PMID:15784735   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RHO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,630,735 - 5,638,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,669,643 - 5,674,903 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,661,948 - 5,667,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,661,632 - 5,667,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,377,793 - 5,383,047 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,730,818 - 5,736,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,706,443 - 5,711,705 (-)NCBIUU_Cfam_GSD_1.0
RHO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,528,639 - 129,535,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,528,639 - 129,535,344 (+)EnsemblGRCh38hg38GRCh38
GRCh373129,247,482 - 129,254,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,730,172 - 130,736,877 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,730,179 - 130,736,885NCBI
Celera3127,674,318 - 127,681,023 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3126,630,783 - 126,637,404 (+)NCBIHuRef
CHM1_13129,210,611 - 129,217,316 (+)NCBICHM1_1
T2T-CHM13v2.03132,273,081 - 132,279,773 (+)NCBIT2T-CHM13v2.0
Rho
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,903,741 - 115,916,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,908,709 - 115,916,997 (+)EnsemblGRCm39 Ensembl
GRCm386115,926,754 - 115,940,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,931,748 - 115,940,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv376115,881,945 - 115,888,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,897,546 - 115,904,449 (+)NCBIMGSCv36mm8
Celera6117,767,245 - 117,774,151 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
Rho
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,653,205 - 150,658,367 (+)NCBIGRCr8
mRatBN7.24148,975,597 - 148,988,693 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,980,611 - 148,985,773 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,209,107 - 155,214,199 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,993,130 - 150,998,222 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,616,029 - 149,621,121 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,832,136 - 147,837,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,832,136 - 147,837,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,115,847 - 211,121,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,057,788 - 152,062,950 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,302,628 - 152,307,791 (+)NCBI
Celera4137,870,273 - 137,875,435 (+)NCBICelera
Cytogenetic Map4q42NCBI
Rho
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,787,337 - 17,791,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,787,337 - 17,791,982 (-)NCBIChiLan1.0ChiLan1.0
RHO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,461,364 - 127,471,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,466,088 - 127,473,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,586,510 - 126,593,028 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,938,419 - 133,944,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,938,419 - 133,944,928 (+)Ensemblpanpan1.1panPan2
Rho
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,008,183 - 18,014,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602894,617 - 901,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602896,730 - 901,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,135,867 - 76,140,946 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RHO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,513,611 - 51,520,589 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,515,081 - 51,519,974 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,957,244 - 114,963,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rho
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872523,912 - 527,615 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872523,892 - 528,278 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RHO
66 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00845048633   ⟹   ENSCAFP00845038150
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl205,661,632 - 5,667,315 (-)Ensembl
RefSeq Acc Id: NM_001008276   ⟹   NP_001008277
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1205,632,150 - 5,637,404 (-)NCBI
Dog10K_Boxer_Tasha205,669,643 - 5,674,903 (-)NCBI
ROS_Cfam_1.0205,661,948 - 5,667,219 (-)NCBI
UMICH_Zoey_3.1205,377,793 - 5,383,047 (-)NCBI
UNSW_CanFamBas_1.0205,730,818 - 5,736,090 (-)NCBI
UU_Cfam_GSD_1.0205,706,443 - 5,711,705 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001008277   ⟸   NM_001008276
- UniProtKB: A0A8C0P150 (UniProtKB/TrEMBL),   A0A8I3QE57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00845038150   ⟸   ENSCAFT00845048633

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054698 UniProtKB/TrEMBL
  ENSCAFG00030021305 UniProtKB/TrEMBL
  ENSCAFG00040020487 UniProtKB/TrEMBL
  ENSCAFG00845027581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000096295.1 UniProtKB/TrEMBL
  ENSCAFT00030039101.1 UniProtKB/TrEMBL
  ENSCAFT00040037908.1 UniProtKB/TrEMBL
  ENSCAFT00845048633 ENTREZGENE
  ENSCAFT00845048633.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Opsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Retinal_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:493763 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene RHO ENTREZGENE
PANTHER OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHODOPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHODOPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0P150 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QE57 ENTREZGENE, UniProtKB/TrEMBL
  OPSD_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
  Q9XSS9_CANLF UniProtKB/TrEMBL
UniProt Secondary P79146 UniProtKB/Swiss-Prot
  Q8MK70 UniProtKB/Swiss-Prot
VGNC ID VGNC:45554 ENTREZGENE