CYLD (CYLD lysine 63 deubiquitinase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CYLD (CYLD lysine 63 deubiquitinase) Canis lupus familiaris
Analyze
Symbol: CYLD
Name: CYLD lysine 63 deubiquitinase
RGD ID: 12350455
Description: ENCODES a protein that exhibits Met1-linked polyubiquitin deubiquitinase activity (ortholog); INVOLVED IN CD4-positive or CD8-positive, alpha-beta T cell lineage commitment (ortholog); homeostasis of number of cells (ortholog); necroptotic process (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Brooke-Spiegler syndrome (ortholog); Frontotemporal Dementia and/or Amyotrophic Lateral Sclerosis-8 (ortholog); genetic disease (ortholog); FOUND IN cell projection (inferred); centrosome (inferred); ciliary basal body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase CYLD
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,561,684 - 64,628,829 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,562,503 - 64,628,175 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,134,885 - 61,201,742 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,106,294 - 65,174,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,102,752 - 65,174,189 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,931,223 - 61,997,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,949,929 - 63,017,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0263,838,510 - 63,905,381 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CYLD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,561,684 - 64,628,829 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,562,503 - 64,628,175 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,134,885 - 61,201,742 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,106,294 - 65,174,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,102,752 - 65,174,189 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,931,223 - 61,997,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,949,929 - 63,017,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0263,838,510 - 63,905,381 (-)NCBIUU_Cfam_GSD_1.0
CYLD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381650,742,086 - 50,801,935 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1650,742,050 - 50,801,935 (+)EnsemblGRCh38hg38GRCh38
GRCh371650,775,997 - 50,835,846 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,333,462 - 49,393,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 341649,333,485 - 49,390,029NCBI
Celera1635,291,289 - 35,351,164 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1636,663,187 - 36,723,275 (+)NCBIHuRef
CHM1_11652,183,487 - 52,243,322 (+)NCBICHM1_1
T2T-CHM13v2.01656,539,727 - 56,599,616 (+)NCBIT2T-CHM13v2.0
Cyld
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,423,506 - 89,478,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl889,423,675 - 89,478,573 (+)EnsemblGRCm39 Ensembl
GRCm38888,696,878 - 88,751,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,697,028 - 88,751,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37891,220,927 - 91,275,844 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,587,180 - 91,638,560 (+)NCBIMGSCv36mm8
Celera892,977,380 - 93,032,328 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.51NCBI
Cyld
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,487,491 - 34,547,311 (-)NCBIGRCr8
mRatBN7.21918,310,632 - 18,373,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,314,019 - 18,373,658 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1919,994,711 - 20,053,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01925,189,306 - 25,247,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01928,146,665 - 28,205,606 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01919,264,984 - 19,323,817 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,265,164 - 19,315,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01930,298,220 - 30,357,107 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,616,209 - 19,619,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1918,203,184 - 18,261,162 (-)NCBICelera
Cytogenetic Map19p11NCBI
Cyld
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,788,655 - 8,845,925 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554338,788,867 - 8,845,925 (+)NCBIChiLan1.0ChiLan1.0
CYLD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21860,198,381 - 60,258,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11666,104,132 - 66,168,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01631,004,393 - 31,064,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11649,882,751 - 49,942,629 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,882,751 - 49,942,629 (+)Ensemblpanpan1.1panPan2
Cyld
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,773,668 - 55,838,158 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364753,750,882 - 3,812,118 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364753,750,917 - 3,812,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYLD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,059,081 - 34,121,264 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1634,058,091 - 34,121,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2630,402,013 - 30,416,351 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYLD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,541,022 - 36,600,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl536,541,764 - 36,595,417 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604739,901,441 - 39,961,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cyld
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247575,895,912 - 5,953,485 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CYLD
639 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 9 3 2 12 8 4
Low 5 5 13 6 3 6 6 4 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_849343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000015568   ⟹   ENSCAFP00000014406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,563,044 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063286   ⟹   ENSCAFP00000058959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,562,503 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068180   ⟹   ENSCAFP00000055446
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,563,044 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077639   ⟹   ENSCAFP00000048668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,562,808 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080094   ⟹   ENSCAFP00000051123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,562,503 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000088186   ⟹   ENSCAFP00000043326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl264,563,044 - 64,628,175 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006826   ⟹   ENSCAFP00845005437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,102,752 - 65,174,189 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006840   ⟹   ENSCAFP00845005450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,102,752 - 65,174,189 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006901   ⟹   ENSCAFP00845005497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,102,752 - 65,174,189 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006905   ⟹   ENSCAFP00845005500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,102,762 - 65,173,601 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006911   ⟹   ENSCAFP00845005505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,106,853 - 65,174,189 (-)Ensembl
RefSeq Acc Id: XM_005617567   ⟹   XP_005617624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1264,561,684 - 64,628,829 (-)NCBI
Dog10K_Boxer_Tasha261,134,885 - 61,201,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617568   ⟹   XP_005617625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1264,561,684 - 64,628,761 (-)NCBI
Dog10K_Boxer_Tasha261,134,885 - 61,201,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617569   ⟹   XP_005617626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1264,561,684 - 64,628,761 (-)NCBI
Dog10K_Boxer_Tasha261,134,885 - 61,201,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038461169   ⟹   XP_038317097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha261,134,885 - 61,201,708 (-)NCBI
RefSeq Acc Id: XM_038461173   ⟹   XP_038317101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha261,134,885 - 61,201,724 (-)NCBI
RefSeq Acc Id: XM_038470242   ⟹   XP_038326170
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1261,931,223 - 61,997,967 (-)NCBI
RefSeq Acc Id: XM_038531067   ⟹   XP_038386995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0263,838,510 - 63,905,381 (-)NCBI
RefSeq Acc Id: XM_038595282   ⟹   XP_038451210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,837 (-)NCBI
RefSeq Acc Id: XM_038595283   ⟹   XP_038451211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,871 (-)NCBI
RefSeq Acc Id: XM_038595284   ⟹   XP_038451212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,837 (-)NCBI
RefSeq Acc Id: XM_038595285   ⟹   XP_038451213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,837 (-)NCBI
RefSeq Acc Id: XM_038595287   ⟹   XP_038451215
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,837 (-)NCBI
RefSeq Acc Id: XM_038595288   ⟹   XP_038451216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0262,949,929 - 63,017,853 (-)NCBI
RefSeq Acc Id: XM_038659370   ⟹   XP_038515298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,223 (-)NCBI
RefSeq Acc Id: XM_038659371   ⟹   XP_038515299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,257 (-)NCBI
RefSeq Acc Id: XM_038659372   ⟹   XP_038515300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,223 (-)NCBI
RefSeq Acc Id: XM_038659373   ⟹   XP_038515301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,223 (-)NCBI
RefSeq Acc Id: XM_038659374   ⟹   XP_038515302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,223 (-)NCBI
RefSeq Acc Id: XM_038659375   ⟹   XP_038515303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,106,294 - 65,174,239 (-)NCBI
RefSeq Acc Id: XM_849343   ⟹   XP_854436
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1264,561,684 - 64,628,761 (-)NCBI
Dog10K_Boxer_Tasha261,134,885 - 61,201,708 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005617624 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617625 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326170 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386995 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515298 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515299 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515300 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515301 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515302 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515303 (Get FASTA)   NCBI Sequence Viewer  
  XP_854436 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000043326.1
  ENSCAFP00000048668.2
  ENSCAFP00000051123.2
  ENSCAFP00000055446.1
  ENSCAFP00000058959.2
  ENSCAFP00030013227.1
  ENSCAFP00030013374.1
  ENSCAFP00030013421.1
  ENSCAFP00040021051.1
  ENSCAFP00040021092.1
  ENSCAFP00845005437
  ENSCAFP00845005437.1
  ENSCAFP00845005450.1
  ENSCAFP00845005497.1
  ENSCAFP00845005500
  ENSCAFP00845005500.1
  ENSCAFP00845005505
  ENSCAFP00845005505.1
Reference Protein Sequences
RefSeq Acc Id: XP_005617624   ⟸   XM_005617567
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RFJ2 (UniProtKB/TrEMBL),   A0A8I3MSL4 (UniProtKB/TrEMBL),   A0A8C0YXA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617626   ⟸   XM_005617569
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MLG1 (UniProtKB/TrEMBL),   A0A8P0P0W3 (UniProtKB/TrEMBL),   A0A8I3MLC9 (UniProtKB/TrEMBL),   A0A8P0P4S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617625   ⟸   XM_005617568
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SG81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_854436   ⟸   XM_849343
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RFJ2 (UniProtKB/TrEMBL),   A0A8I3MSL4 (UniProtKB/TrEMBL),   A0A8C0YXA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000043326   ⟸   ENSCAFT00000088186
RefSeq Acc Id: ENSCAFP00000014406   ⟸   ENSCAFT00000015568
RefSeq Acc Id: ENSCAFP00000051123   ⟸   ENSCAFT00000080094
RefSeq Acc Id: ENSCAFP00000048668   ⟸   ENSCAFT00000077639
RefSeq Acc Id: ENSCAFP00000058959   ⟸   ENSCAFT00000063286
RefSeq Acc Id: ENSCAFP00000055446   ⟸   ENSCAFT00000068180
RefSeq Acc Id: XP_038326170   ⟸   XM_038470242
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451211   ⟸   XM_038595283
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451216   ⟸   XM_038595288
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038451215   ⟸   XM_038595287
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038451213   ⟸   XM_038595285
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038451212   ⟸   XM_038595284
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038451210   ⟸   XM_038595282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038515299   ⟸   XM_038659371
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RFJ2 (UniProtKB/TrEMBL),   A0A8I3MSL4 (UniProtKB/TrEMBL),   A0A8C0YXA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515303   ⟸   XM_038659375
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038515302   ⟸   XM_038659374
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038515301   ⟸   XM_038659373
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MLG1 (UniProtKB/TrEMBL),   A0A8P0P0W3 (UniProtKB/TrEMBL),   A0A8I3MLC9 (UniProtKB/TrEMBL),   A0A8P0P4S9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515300   ⟸   XM_038659372
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SG81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515298   ⟸   XM_038659370
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RFJ2 (UniProtKB/TrEMBL),   A0A8I3MSL4 (UniProtKB/TrEMBL),   A0A8C0YXA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317101   ⟸   XM_038461173
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038317097   ⟸   XM_038461169
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038386995   ⟸   XM_038531067
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YXA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845005500   ⟸   ENSCAFT00845006905
RefSeq Acc Id: ENSCAFP00845005450   ⟸   ENSCAFT00845006840
RefSeq Acc Id: ENSCAFP00845005437   ⟸   ENSCAFT00845006826
RefSeq Acc Id: ENSCAFP00845005505   ⟸   ENSCAFT00845006911
RefSeq Acc Id: ENSCAFP00845005497   ⟸   ENSCAFT00845006901
Protein Domains
CAP-Gly   USP

Promoters
RGD ID:13682529
Promoter ID:EPDNEW_C597
Type:initiation region
Name:CYLD_1
Description:CYLD lysine 63 deubiquitinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1264,628,773 - 64,628,833EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009802 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008223 UniProtKB/TrEMBL
  ENSCAFG00040012441 UniProtKB/TrEMBL
  ENSCAFG00845003806 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000063286.2 UniProtKB/TrEMBL
  ENSCAFT00000068180.2 UniProtKB/TrEMBL
  ENSCAFT00000077639.2 UniProtKB/TrEMBL
  ENSCAFT00000080094.2 UniProtKB/TrEMBL
  ENSCAFT00000088186.2 UniProtKB/TrEMBL
  ENSCAFT00030015168.1 UniProtKB/TrEMBL
  ENSCAFT00030015337.1 UniProtKB/TrEMBL
  ENSCAFT00030015393.1 UniProtKB/TrEMBL
  ENSCAFT00040024229.1 UniProtKB/TrEMBL
  ENSCAFT00040024277.1 UniProtKB/TrEMBL
  ENSCAFT00845006826 ENTREZGENE
  ENSCAFT00845006826.1 UniProtKB/TrEMBL
  ENSCAFT00845006840.1 UniProtKB/TrEMBL
  ENSCAFT00845006901.1 UniProtKB/TrEMBL
  ENSCAFT00845006905 ENTREZGENE
  ENSCAFT00845006905.1 UniProtKB/TrEMBL
  ENSCAFT00845006911 ENTREZGENE
  ENSCAFT00845006911.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.190 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
KEGG Report cfa:611649 UniProtKB/TrEMBL
NCBI Gene CYLD ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S3A UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE CYLD UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/TrEMBL
  CYLD_phos_site UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
PROSITE CAP_GLY_1 UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/TrEMBL
  USP_1 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
SMART CAP_GLY UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
  SSF74924 UniProtKB/TrEMBL
UniProt A0A8C0ML54_CANLF UniProtKB/TrEMBL
  A0A8C0MP30_CANLF UniProtKB/TrEMBL
  A0A8C0RFJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SG81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YXA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MNB7_CANLF UniProtKB/TrEMBL
  A0A8I3MSL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRP7_CANLF UniProtKB/TrEMBL
  A0A8P0P0W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P4S9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TAV9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:50293 ENTREZGENE