HMOX1 (heme oxygenase 1) - Rat Genome Database

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Gene: HMOX1 (heme oxygenase 1) Canis lupus familiaris
Analyze
Symbol: HMOX1
Name: heme oxygenase 1
RGD ID: 12345490
Description: ENCODES a protein that exhibits arachidonic acid omega-hydroxylase activity (ortholog); enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to arsenic-containing substance (ortholog); cellular response to cadmium ion (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme degradation pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute chest syndrome (ortholog); acute kidney failure (ortholog); FOUND IN caveola (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heme oxygenase (decycling) 1; HO-1; Hsp32
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,744,404 - 28,751,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,743,795 - 28,751,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,683,213 - 28,689,972 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01029,531,402 - 29,538,230 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,530,793 - 29,539,227 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11029,255,139 - 29,261,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,565,774 - 29,572,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,745,379 - 29,752,300 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abdominal aortic aneurysm  (ISO)
acute chest syndrome  (ISO)
acute kidney failure  (ISO)
Acute Lung Injury  (ISO)
acute myeloid leukemia  (ISO)
adenocarcinoma  (ISO)
adenylosuccinase lyase deficiency  (ISO)
adrenoleukodystrophy  (ISO)
adult respiratory distress syndrome  (ISO)
Altitude Sickness  (ISO)
Alzheimer's disease  (ISO)
arteriosclerosis  (ISO)
asthma  (ISO)
Behcet's disease  (ISO)
berylliosis  (ISO)
Blast Crisis  (ISO)
blood coagulation disease  (ISO)
Brain Death  (ISO)
brain edema  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Brain Injuries  (ISO)
brain ischemia  (ISO)
Breast Neoplasms  (ISO)
bronchiolitis obliterans  (ISO)
Carbon Monoxide Poisoning  (ISO)
Carbon Tetrachloride Poisoning  (ISO)
Cardiomegaly  (ISO)
carotid artery disease  (ISO)
carotid artery thrombosis  (ISO)
Cerebral Hemorrhage  (ISO)
cerebral infarction  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
chronic myeloid leukemia  (ISO)
chronic obstructive pulmonary disease  (ISO)
Chronic Tubulointerstitial Nephropathy  (ISO)
colitis  (ISO)
congestive heart failure  (ISO)
contact dermatitis  (ISO)
coronary artery disease  (ISO)
Coronary Disease  (ISO)
coronary restenosis  (ISO)
cystic fibrosis  (ISO)
diabetic angiopathy  (ISO)
Diabetic Cardiomyopathies  (ISO)
Diabetic Nephropathies  (ISO)
Dilatation, Pathologic  (ISO)
Drug-Related Side Effects and Adverse Reactions  (ISO)
end stage renal disease  (ISO)
Endotoxemia  (ISO)
esophageal cancer  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Liver Cirrhosis  (ISO)
Experimental Mammary Neoplasms  (ISO)
Experimental Radiation Injuries  (ISO)
factor VIII deficiency  (ISO)
Fever  (ISO)
Fibrosis  (ISO)
gastroparesis  (ISO)
genetic disease  (ISO)
Graft Occlusion, Vascular  (ISO)
Growth Disorders  (ISO)
Helicobacter Infections  (ISO)
Heme Oxygenase 1 Deficiency  (ISO)
hemochromatosis  (ISO)
Hemolysis  (ISO)
hemolytic anemia  (ISO)
Hemorrhagic Shock  (ISO)
Henoch-Schoenlein purpura  (ISO)
hepatic encephalopathy  (ISO)
hepatic veno-occlusive disease  (ISO)
hepatitis  (ISO)
hepatopulmonary syndrome  (ISO)
hepatorenal syndrome  (ISO)
hyperinsulinism  (ISO)
Hyperoxic Lung Injury  (ISO)
Hyperplasia  (ISO)
hypertension  (ISO)
hyperthyroidism  (ISO)
hypertrophic cardiomyopathy  (ISO)
ileus  (ISO)
Inflammation  (ISO)
Insulin Resistance  (ISO)
interstitial lung disease  (ISO)
Intestinal Reperfusion Injury  (ISO)
intracranial vasospasm  (ISO)
iron metabolism disease  (ISO)
ischemia  (ISO)
Kawasaki disease  (ISO)
Kidney Reperfusion Injury  (ISO)
learning disability  (ISO)
limb ischemia  (ISO)
liver disease  (ISO)
Liver Neoplasms  (ISO)
Liver Reperfusion Injury  (ISO)
lung disease  (ISO)
Lung Injury  (ISO)
Lung Neoplasms  (ISO)
Lung Reperfusion Injury  (ISO)
malaria  (ISO)
Metabolic Syndrome  (ISO)
middle cerebral artery infarction  (ISO)
myocardial infarction  (ISO)
Myocardial Ischemia  (ISO)
Myocardial Reperfusion Injury  (ISO)
Neointima  (ISO)
Neonatal Hyperbilirubinemia  (ISO)
Neoplasm Invasiveness  (ISO)
neurodegenerative disease  (ISO)
newborn respiratory distress syndrome  (ISO)
obesity  (ISO)
obstructive sleep apnea  (ISO)
pancreas disease  (ISO)
Paraparesis  (ISO)
Parkinson's disease  (ISO)
Parkinsonism  (ISO)
Pathologic Constriction  (ISO)
peptic ulcer disease  (ISO)
Perennial Allergic Rhinitis  (ISO)
Pneumococcal Pneumonia  (ISO)
pneumonia  (ISO)
pneumothorax  (ISO)
portal hypertension  (ISO)
pre-eclampsia  (ISO)
Pregnancy-Induced Hypertension  (ISO)
primary biliary cholangitis  (ISO)
Prostatic Neoplasms  (ISO)
Pulmonary Edema of Mountaineers  (ISO)
pulmonary emphysema  (ISO)
pulmonary fibrosis  (ISO)
pulmonary hypertension  (ISO)
pulmonary sarcoidosis  (ISO)
pulmonary venoocclusive disease  (ISO)
renal hypertension  (ISO)
Reperfusion Injury  (ISO)
Retina Reperfusion Injury  (ISO)
retinal disease  (ISO)
retinal ischemia  (ISO)
Rhabdomyolysis  (ISO)
Right Ventricular Hypertrophy  (ISO)
sciatic neuropathy  (ISO)
sickle cell anemia  (ISO)
silicosis  (ISO)
Sjogren's syndrome  (ISO)
Spinal Cord Injuries  (ISO)
spinocerebellar ataxia type 17  (ISO)
status epilepticus  (ISO)
Stomach Neoplasms  (ISO)
Stroke  (ISO)
Subarachnoid Hemorrhage  (ISO)
systemic mastocytosis  (ISO)
Testis Reperfusion Injury  (ISO)
thrombosis  (ISO)
toxic shock syndrome  (ISO)
type 2 diabetes mellitus  (ISO)
varicocele  (ISO)
Vascular System Injuries  (ISO)
Ventricular Fibrillation  (ISO)
viral pneumonia  (ISO)
visceral leishmaniasis  (ISO)
Wounds and Injuries  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
cellular response to arsenic-containing substance  (IEA,ISO)
cellular response to cadmium ion  (IEA,ISO)
cellular response to cisplatin  (IEA,ISO)
cellular response to heat  (IEA)
cellular response to hypoxia  (IEA)
cellular response to nutrient  (ISO)
epithelial cell apoptotic process  (IEA,ISO)
erythrocyte homeostasis  (IEA)
heme catabolic process  (IEA,ISO)
heme metabolic process  (IEA,ISO)
heme oxidation  (IEA)
intracellular iron ion homeostasis  (IEA)
intracellular signal transduction  (ISO)
intrinsic apoptotic signaling pathway in response to DNA damage  (ISO)
liver regeneration  (ISO)
macroautophagy  (IEA,ISO)
multicellular organismal-level iron ion homeostasis  (IEA)
negative regulation by host of viral transcription  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of DNA binding  (ISO)
negative regulation of DNA-binding transcription factor activity  (ISO)
negative regulation of epithelial cell apoptotic process  (ISO)
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors  (IEA)
negative regulation of macroautophagy  (IEA,ISO)
negative regulation of mast cell cytokine production  (ISO)
negative regulation of mast cell degranulation  (ISO)
negative regulation of muscle cell apoptotic process  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of smooth muscle cell proliferation  (IEA,ISO)
negative regulation of vascular associated smooth muscle cell proliferation  (ISO)
negative regulation of viral life cycle  (ISO)
positive regulation of angiogenesis  (IEA,ISO)
positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  (IEA)
positive regulation of canonical NF-kappaB signal transduction  (ISO)
positive regulation of cell migration involved in sprouting angiogenesis  (IEA)
positive regulation of epithelial cell apoptotic process  (IEA,ISO)
positive regulation of macroautophagy  (IEA,ISO)
positive regulation of smooth muscle cell proliferation  (IEA)
regulation of blood pressure  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
response to 3-methylcholanthrene  (ISO)
response to arachidonic acid  (ISO)
response to estrogen  (ISO)
response to hydrogen peroxide  (ISO)
response to hypoxia  (ISO)
response to nicotine  (IEA)
response to oxidative stress  (IEA,ISO)
response to xenobiotic stimulus  (ISO)
small GTPase-mediated signal transduction  (ISO)
wound healing involved in inflammatory response  (IEA)

Cellular Component

References
Additional References at PubMed
PMID:16622174   PMID:22301074   PMID:27627984   PMID:30032202   PMID:33430899  


Genomics

Comparative Map Data
HMOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,744,404 - 28,751,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,743,795 - 28,751,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,683,213 - 28,689,972 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01029,531,402 - 29,538,230 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,530,793 - 29,539,227 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11029,255,139 - 29,261,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,565,774 - 29,572,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,745,379 - 29,752,300 (-)NCBIUU_Cfam_GSD_1.0
HMOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,381,096 - 35,394,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,380,361 - 35,394,214 (+)EnsemblGRCh38hg38GRCh38
GRCh372235,777,089 - 35,790,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,107,087 - 34,120,194 (+)NCBINCBI36Build 36hg18NCBI36
Build 342234,101,640 - 34,114,748NCBI
Celera2219,579,740 - 19,592,881 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2218,737,577 - 18,750,716 (+)NCBIHuRef
CHM1_12235,735,791 - 35,748,937 (+)NCBICHM1_1
T2T-CHM13v2.02235,839,114 - 35,852,226 (+)NCBIT2T-CHM13v2.0
Hmox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39875,820,246 - 75,827,221 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl875,820,249 - 75,827,217 (+)EnsemblGRCm39 Ensembl
GRCm38875,093,618 - 75,100,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl875,093,621 - 75,100,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv37877,617,517 - 77,624,492 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36877,989,694 - 77,996,657 (+)NCBIMGSCv36mm8
Celera879,400,848 - 79,407,824 (+)NCBICelera
Cytogenetic Map8C1NCBI
cM Map835.59NCBI
Hmox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81913,452,365 - 13,479,823 (+)NCBIGRCr8
mRatBN7.21913,466,287 - 13,474,082 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1913,467,244 - 13,474,079 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1913,440,832 - 13,447,675 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01914,206,098 - 14,212,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01913,487,026 - 13,493,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01914,508,634 - 14,515,455 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1914,508,616 - 14,515,456 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01925,622,556 - 25,629,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41913,963,139 - 13,969,960 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11913,967,964 - 13,974,784 (+)NCBI
Celera1913,334,259 - 13,341,080 (+)NCBICelera
Cytogenetic Map19p11NCBI
Hmox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,124,510 - 43,130,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540543,124,447 - 43,128,873 (+)NCBIChiLan1.0ChiLan1.0
HMOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22345,322,157 - 45,335,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12248,018,985 - 48,034,597 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02216,388,368 - 16,401,289 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12234,230,825 - 34,244,063 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,230,825 - 34,244,063 (+)Ensemblpanpan1.1panPan2
Hmox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494512,031,937 - 12,038,780 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364925,042,330 - 5,049,311 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364925,042,353 - 5,049,216 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMOX1
(Sus scrofa - pig)		 No map positions available.
HMOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,144,466 - 18,157,944 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,144,545 - 18,157,971 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045107,791,541 - 107,805,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624750342,146 - 345,887 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624750341,699 - 346,005 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HMOX1
112 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 5 21 6 6 6 6 6 12 9 6
Low 2 1 8 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000002674   ⟹   ENSCAFP00000002482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1028,743,795 - 28,751,773 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017222   ⟹   ENSCAFP00845013423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1029,530,793 - 29,539,227 (-)Ensembl
RefSeq Acc Id: NM_001194969   ⟹   NP_001181898
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11028,744,404 - 28,751,544 (-)NCBI
Dog10K_Boxer_Tasha1028,683,213 - 28,689,972 (-)NCBI
ROS_Cfam_1.01029,531,402 - 29,538,230 (-)NCBI
UMICH_Zoey_3.11029,255,139 - 29,261,959 (-)NCBI
UNSW_CanFamBas_1.01029,565,774 - 29,572,612 (-)NCBI
UU_Cfam_GSD_1.01029,745,379 - 29,752,300 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001181898 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS72412 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000002482.3
  ENSCAFP00845013423.1
Reference Protein Sequences
RefSeq Acc Id: NP_001181898   ⟸   NM_001194969
- UniProtKB: Q6Q2K4 (UniProtKB/TrEMBL),   A0A8P0N4U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000002482   ⟸   ENSCAFT00000002674
RefSeq Acc Id: ENSCAFP00845013423   ⟸   ENSCAFT00845017222

Promoters
RGD ID:13684994
Promoter ID:EPDNEW_C3063
Type:single initiation site
Name:HMOX1_1
Description:heme oxygenase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11028,751,755 - 28,751,815EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001711 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845009778 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002674.5 UniProtKB/TrEMBL
  ENSCAFT00845017222.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.910.10 UniProtKB/TrEMBL
InterPro Haem_Oase UniProtKB/TrEMBL
  Haem_Oase-like UniProtKB/TrEMBL
  Haem_Oase-like_multi-hlx UniProtKB/TrEMBL
  Haem_oxygenase_CS UniProtKB/TrEMBL
KEGG Report cfa:442987 UniProtKB/TrEMBL
NCBI Gene HMOX1 ENTREZGENE
PANTHER HEME OXYGENASE 1 UniProtKB/TrEMBL
  PTHR10720 UniProtKB/TrEMBL
Pfam Heme_oxygenase UniProtKB/TrEMBL
PIRSF Haem_Oase UniProtKB/TrEMBL
PRINTS HAEMOXYGNASE UniProtKB/TrEMBL
PROSITE HEME_OXYGENASE UniProtKB/TrEMBL
Superfamily-SCOP SSF48613 UniProtKB/TrEMBL
UniProt A0A8I3N2D2_CANLF UniProtKB/TrEMBL
  A0A8P0N4U0 ENTREZGENE, UniProtKB/TrEMBL
  Q6Q2K4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41719 ENTREZGENE