MSRB1 (methionine sulfoxide reductase B1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: MSRB1 (methionine sulfoxide reductase B1) Canis lupus familiaris
Analyze
Symbol: MSRB1
Name: methionine sulfoxide reductase B1
RGD ID: 12323230
Description: ENCODES a protein that exhibits actin binding (inferred); oxidoreductase activity (inferred); peptide-methionine (R)-S-oxide reductase activity (inferred); INVOLVED IN protein repair (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); idiopathic generalized epilepsy (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: methionine-R-sulfoxide reductase B1; selenoprotein X, 1; SEPX1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,981,721 - 38,986,459 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,981,721 - 38,986,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,221,193 - 40,225,716 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,298,520 - 39,303,043 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,298,520 - 39,303,043 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,975,293 - 38,979,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,947,617 - 38,952,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,426,473 - 39,430,998 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
MSRB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,981,721 - 38,986,459 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,981,721 - 38,986,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,221,193 - 40,225,716 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,298,520 - 39,303,043 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,298,520 - 39,303,043 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,975,293 - 38,979,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,947,617 - 38,952,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,426,473 - 39,430,998 (+)NCBIUU_Cfam_GSD_1.0
MSRB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,938,229 - 1,943,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,938,229 - 1,943,199 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,988,230 - 1,993,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,928,235 - 1,933,295 (-)NCBINCBI36Build 36hg18NCBI36
Build 34161,928,234 - 1,933,295NCBI
Celera162,200,442 - 2,205,502 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,912,836 - 1,917,896 (-)NCBIHuRef
CHM1_1161,988,182 - 1,993,242 (-)NCBICHM1_1
T2T-CHM13v2.0161,958,200 - 1,963,171 (-)NCBIT2T-CHM13v2.0
Msrb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,955,567 - 24,961,752 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,955,616 - 24,961,752 (+)EnsemblGRCm39 Ensembl
GRCm381724,736,593 - 24,742,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,736,642 - 24,742,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,873,587 - 24,879,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,464,267 - 24,470,378 (+)NCBIMGSCv36mm8
Celera1725,259,999 - 25,266,140 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Msrb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,269,414 - 14,275,140 (+)NCBIGRCr8
mRatBN7.21013,764,883 - 13,770,609 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,764,883 - 13,770,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,511,465 - 18,517,194 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,000,325 - 18,006,054 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,499,525 - 13,505,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,105,750 - 14,111,463 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,105,750 - 14,111,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,921,478 - 13,927,191 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,992,929 - 13,998,642 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,444,614 - 13,450,324 (+)NCBICelera
Cytogenetic Map10q12NCBI
Msrb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,323,039 - 15,327,406 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,322,961 - 15,328,311 (+)NCBIChiLan1.0ChiLan1.0
MSRB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,404,074 - 2,409,169 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,185,920 - 6,193,549 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016761,003 - 766,102 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,027,606 - 2,032,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,028,487 - 2,032,636 (-)Ensemblpanpan1.1panPan2
Msrb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,618,706 - 104,622,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,086,822 - 2,089,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,086,573 - 2,090,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSRB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,017,194 - 40,028,047 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,017,161 - 40,021,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MSRB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,836,059 - 1,841,132 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606829,236,044 - 29,241,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msrb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913310,708 - 315,383 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MSRB1
44 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000092980   ⟹   ENSCAFP00000058418
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,981,721 - 38,986,459 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845032798   ⟹   ENSCAFP00845025669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,298,520 - 39,303,043 (+)Ensembl
RefSeq Acc Id: NM_001114749   ⟹   NP_001108221
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,981,721 - 38,986,459 (+)NCBI
Dog10K_Boxer_Tasha640,221,193 - 40,225,716 (+)NCBI
ROS_Cfam_1.0639,298,520 - 39,303,043 (+)NCBI
UMICH_Zoey_3.1638,975,293 - 38,979,816 (+)NCBI
UNSW_CanFamBas_1.0638,947,617 - 38,952,140 (+)NCBI
UU_Cfam_GSD_1.0639,426,473 - 39,430,998 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001108221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000058418.1
  ENSCAFP00030032019.1
  ENSCAFP00040002021.1
  ENSCAFP00845025669
  ENSCAFP00845025669.1
RefSeq Acc Id: NP_001108221   ⟸   NM_001114749
- UniProtKB: A0A8C0NYB2 (UniProtKB/TrEMBL),   A0A8I3P466 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000058418   ⟸   ENSCAFT00000092980
RefSeq Acc Id: ENSCAFP00845025669   ⟸   ENSCAFT00845032798
Protein Domains
MsrB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044942 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019978 UniProtKB/TrEMBL
  ENSCAFG00040001268 UniProtKB/TrEMBL
  ENSCAFG00845018543 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000092980.2 UniProtKB/TrEMBL
  ENSCAFT00030036702.1 UniProtKB/TrEMBL
  ENSCAFT00040002367.1 UniProtKB/TrEMBL
  ENSCAFT00845032798 ENTREZGENE
  ENSCAFT00845032798.1 UniProtKB/TrEMBL
Gene3D-CATH Peptide methionine sulfoxide reductase UniProtKB/TrEMBL
InterPro Met_Sox_Rdtase_MsrB UniProtKB/TrEMBL
  Mss4-like_sf UniProtKB/TrEMBL
NCBI Gene MSRB1 ENTREZGENE
PANTHER METHIONINE-R-SULFOXIDE REDUCTASE B1 UniProtKB/TrEMBL
  METHIONINE-R-SULFOXIDE REDUCTASE B1 UniProtKB/TrEMBL
Pfam SelR UniProtKB/TrEMBL
PROSITE MSRB UniProtKB/TrEMBL
Superfamily-SCOP SSF51316 UniProtKB/TrEMBL
UniProt A0A8C0NYB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P466 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111574 ENTREZGENE