TACR3 (tachykinin receptor 3) - Rat Genome Database

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Gene: TACR3 (tachykinin receptor 3) Canis lupus familiaris
Analyze
Symbol: TACR3
Name: tachykinin receptor 3
RGD ID: 12268971
Description: ENCODES a protein that exhibits tachykinin receptor activity (ortholog); INVOLVED IN positive regulation of blood pressure (ortholog); positive regulation of heart rate (ortholog); positive regulation of uterine smooth muscle contraction (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); amenorrhea (ortholog); autism spectrum disorder (ortholog); FOUND IN dendrite membrane (ortholog); neuronal cell body membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: neurokinin receptor subtype NK3; neuromedin-K receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13224,812,344 - 24,888,452 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3224,812,119 - 24,907,580 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3217,136,602 - 17,213,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03225,029,113 - 25,105,792 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3225,028,888 - 25,106,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13225,048,235 - 25,126,781 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03224,791,973 - 24,868,622 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03214,994,194 - 15,070,872 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7891345   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TACR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13224,812,344 - 24,888,452 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3224,812,119 - 24,907,580 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3217,136,602 - 17,213,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03225,029,113 - 25,105,792 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3225,028,888 - 25,106,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13225,048,235 - 25,126,781 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03224,791,973 - 24,868,622 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03214,994,194 - 15,070,872 (+)NCBIUU_Cfam_GSD_1.0
TACR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384103,586,031 - 103,719,985 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4103,586,031 - 103,719,985 (-)EnsemblGRCh38hg38GRCh38
GRCh374104,507,188 - 104,641,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364104,730,074 - 104,860,422 (-)NCBINCBI36Build 36hg18NCBI36
Build 344104,868,228 - 104,998,577NCBI
Celera4101,809,125 - 101,939,478 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4100,245,509 - 100,375,866 (-)NCBIHuRef
CHM1_14104,487,252 - 104,617,580 (-)NCBICHM1_1
T2T-CHM13v2.04106,897,954 - 107,031,922 (-)NCBIT2T-CHM13v2.0
Tacr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393134,534,768 - 134,640,342 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3134,534,768 - 134,640,340 (+)EnsemblGRCm39 Ensembl
GRCm383134,829,007 - 134,934,581 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3134,829,007 - 134,934,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv373134,491,971 - 134,597,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363134,766,394 - 134,871,959 (+)NCBIMGSCv36mm8
Celera3141,238,671 - 141,345,575 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.47NCBI
Tacr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82225,940,497 - 226,037,756 (+)NCBIGRCr8
mRatBN7.22223,266,536 - 223,363,791 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2223,266,536 - 223,363,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2230,969,011 - 231,055,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02228,868,726 - 228,955,238 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02223,733,543 - 223,820,045 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02240,021,152 - 240,118,971 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2240,021,152 - 240,118,971 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02258,547,661 - 258,644,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42232,309,015 - 232,404,964 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12232,295,754 - 232,391,704 (+)NCBI
Celera2215,485,216 - 215,569,645 (+)NCBICelera
Cytogenetic Map2q43NCBI
Tacr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554965,151,668 - 5,222,624 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554965,152,134 - 5,222,565 (+)NCBIChiLan1.0ChiLan1.0
TACR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23101,649,480 - 101,782,419 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14101,936,181 - 102,074,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0496,022,788 - 96,162,249 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14106,644,943 - 106,776,172 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4106,644,943 - 106,776,172 (-)Ensemblpanpan1.1panPan2
TACR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8117,662,122 - 117,721,613 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18117,662,122 - 117,718,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28126,511,759 - 126,570,636 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TACR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1751,662,248 - 51,764,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl751,665,147 - 51,762,390 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603730,211,968 - 30,313,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248304,635,987 - 4,704,251 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TACR3
1038 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system integumental system nervous system reproductive system respiratory system
High
Medium
Low 5 6
Below cutoff 5 2 3 2 6 8 2

Sequence


RefSeq Acc Id: ENSCAFT00000017261   ⟹   ENSCAFP00000015974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3224,812,119 - 24,907,580 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048116   ⟹   ENSCAFP00845037748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3225,028,888 - 25,106,462 (-)Ensembl
RefSeq Acc Id: NM_001097541   ⟹   NP_001091010
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13224,812,344 - 24,888,452 (-)NCBI
Dog10K_Boxer_Tasha3217,136,602 - 17,213,041 (+)NCBI
ROS_Cfam_1.03225,029,113 - 25,105,792 (-)NCBI
UMICH_Zoey_3.13225,048,235 - 25,126,781 (-)NCBI
UNSW_CanFamBas_1.03224,791,973 - 24,868,622 (-)NCBI
UU_Cfam_GSD_1.03214,994,194 - 15,070,872 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001091010 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD14162 (Get FASTA)   NCBI Sequence Viewer  
  CAM28435 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015974.5
  ENSCAFP00030041339.1
  ENSCAFP00040039266.1
  ENSCAFP00845037748
  ENSCAFP00845037748.1
RefSeq Acc Id: NP_001091010   ⟸   NM_001097541
- UniProtKB: A2BCY0 (UniProtKB/TrEMBL),   A0A8C0PPR8 (UniProtKB/TrEMBL),   A0A8C0TR02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000015974   ⟸   ENSCAFT00000017261
RefSeq Acc Id: ENSCAFP00845037748   ⟸   ENSCAFT00845048116

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010855 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025584 UniProtKB/TrEMBL
  ENSCAFG00040024110 UniProtKB/TrEMBL
  ENSCAFG00845027311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017261.5 UniProtKB/TrEMBL
  ENSCAFT00030047277.1 UniProtKB/TrEMBL
  ENSCAFT00040044942.1 UniProtKB/TrEMBL
  ENSCAFT00845048116 ENTREZGENE
  ENSCAFT00845048116.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Neurokn_rcpt UniProtKB/TrEMBL
  NK3_rcpt UniProtKB/TrEMBL
KEGG Report cfa:403814 UniProtKB/TrEMBL
NCBI Gene TACR3 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED UniProtKB/TrEMBL
  NEUROMEDIN-K RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  NEUROKININ3R UniProtKB/TrEMBL
  NEUROKININR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0PPR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TR02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PTY7_CANLF UniProtKB/TrEMBL
  A0A8P0SG00_CANLF UniProtKB/TrEMBL
  A2BCY0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47068 ENTREZGENE