CD3E (CD3 epsilon subunit of T-cell receptor complex) - Rat Genome Database

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Gene: CD3E (CD3 epsilon subunit of T-cell receptor complex) Canis lupus familiaris
Analyze
Symbol: CD3E
Name: CD3 epsilon subunit of T-cell receptor complex (Ensembl:CD3e molecule)
RGD ID: 12258574
Description: ENCODES a protein that exhibits identical protein binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); calcium-mediated signaling (ortholog); CD4-positive, alpha-beta T cell proliferation (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN alpha-beta T cell receptor complex (ortholog); cell body (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD3 epsilon; CD3E antigen, epsilon polypeptide (TiT3 complex); CD3e molecule; T-cell surface glycoprotein CD3 epsilon chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,403,724 - 15,415,259 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,403,710 - 15,415,260 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,454,474 - 15,466,079 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,346,053 - 15,357,458 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1515,484,300 - 15,495,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,387,761 - 15,399,158 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,428,916 - 15,440,314 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1828779   PMID:18039893   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD3E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,403,724 - 15,415,259 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,403,710 - 15,415,260 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,454,474 - 15,466,079 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,346,053 - 15,357,458 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1515,484,300 - 15,495,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,387,761 - 15,399,158 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,428,916 - 15,440,314 (-)NCBIUU_Cfam_GSD_1.0
CD3E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,304,730 - 118,316,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,304,730 - 118,316,175 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,175,445 - 118,186,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,680,662 - 117,692,100 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,680,661 - 117,692,099NCBI
Celera11115,333,175 - 115,344,768 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,108,889 - 114,120,482 (+)NCBIHuRef
CHM1_111118,061,293 - 118,072,876 (+)NCBICHM1_1
T2T-CHM13v2.011118,321,077 - 118,332,497 (+)NCBIT2T-CHM13v2.0
Cd3e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,910,033 - 44,920,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,910,038 - 44,920,925 (-)EnsemblGRCm39 Ensembl
GRCm38944,998,735 - 45,009,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,998,740 - 45,009,627 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,806,826 - 44,817,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,749,738 - 44,760,585 (-)NCBIMGSCv36mm8
Celera942,267,117 - 42,278,016 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Cd3e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,200,617 - 54,211,770 (-)NCBIGRCr8
mRatBN7.2845,303,848 - 45,315,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,303,852 - 45,315,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,799,452 - 50,810,532 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,078,177 - 49,089,271 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,948,738 - 46,959,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,297,604 - 49,309,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,297,608 - 49,308,806 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,915,622 - 47,926,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,947,257 - 47,958,419 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,956,580 - 47,967,075 (-)NCBI
Celera844,888,608 - 44,901,125 (-)NCBICelera
Cytogenetic Map8q22NCBI
Cd3e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,464,613 - 19,478,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,464,666 - 19,476,425 (+)NCBIChiLan1.0ChiLan1.0
LOC100978919
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,008,720 - 119,021,110 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,113,724 - 120,126,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,142,200 - 113,153,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,074,041 - 117,085,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,074,041 - 117,085,625 (+)Ensemblpanpan1.1panPan2
Cd3e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,410,261 - 100,469,704 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365423,379,361 - 3,390,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD3E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,619,482 - 45,633,968 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,619,730 - 45,633,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,660,852 - 50,675,098 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD3E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,681,142 - 109,692,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,681,065 - 109,692,839 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,342,046 - 16,353,608 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd3e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,712,920 - 13,726,950 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,714,667 - 13,726,881 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD3E
165 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 6 5
Low 1 20 6 6 6 6 5 6
Below cutoff 4 2 6 6 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M55410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000020302   ⟹   ENSCAFP00000018835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl515,403,727 - 15,415,259 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067558   ⟹   ENSCAFP00000049697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl515,403,710 - 15,415,260 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085628   ⟹   ENSCAFP00000052947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl515,403,710 - 15,413,330 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089459   ⟹   ENSCAFP00000059697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl515,403,727 - 15,413,330 (-)Ensembl
RefSeq Acc Id: XM_038474874   ⟹   XP_038330802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1515,484,300 - 15,495,694 (-)NCBI
RefSeq Acc Id: XM_038474875   ⟹   XP_038330803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1515,484,300 - 15,495,694 (-)NCBI
RefSeq Acc Id: XM_038509060   ⟹   XP_038364988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha515,454,474 - 15,466,079 (-)NCBI
RefSeq Acc Id: XM_038509071   ⟹   XP_038364999
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha515,454,474 - 15,466,079 (-)NCBI
RefSeq Acc Id: XM_038536000   ⟹   XP_038391928
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0515,428,916 - 15,440,314 (-)NCBI
RefSeq Acc Id: XM_038536001   ⟹   XP_038391929
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0515,428,916 - 15,440,314 (-)NCBI
RefSeq Acc Id: XM_038600203   ⟹   XP_038456131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0515,387,761 - 15,399,158 (-)NCBI
RefSeq Acc Id: XM_038600204   ⟹   XP_038456132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0515,387,761 - 15,399,158 (-)NCBI
RefSeq Acc Id: XM_038664740   ⟹   XP_038520668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0515,346,053 - 15,357,458 (-)NCBI
RefSeq Acc Id: XM_038664741   ⟹   XP_038520669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0515,346,053 - 15,357,458 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000049697   ⟸   ENSCAFT00000067558
RefSeq Acc Id: ENSCAFP00000018835   ⟸   ENSCAFT00000020302
RefSeq Acc Id: ENSCAFP00000059697   ⟸   ENSCAFT00000089459
RefSeq Acc Id: ENSCAFP00000052947   ⟸   ENSCAFT00000085628
RefSeq Acc Id: XP_038330803   ⟸   XM_038474875
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038330802   ⟸   XM_038474874
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038456132   ⟸   XM_038600204
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038456131   ⟸   XM_038600203
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038520669   ⟸   XM_038664741
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MLW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520668   ⟸   XM_038664740
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MJA4 (UniProtKB/TrEMBL),   A0A8I3MLW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038364999   ⟸   XM_038509071
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JL06 (UniProtKB/TrEMBL),   A0A8P0P8P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038364988   ⟸   XM_038509060
- Peptide Label: isoform X1
- UniProtKB: P27597 (UniProtKB/Swiss-Prot),   A0A8C0JJG7 (UniProtKB/TrEMBL),   A0A8C0JL06 (UniProtKB/TrEMBL),   A0A8P0P8P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391929   ⟸   XM_038536001
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JL06 (UniProtKB/TrEMBL),   A0A8P0P8P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391928   ⟸   XM_038536000
- Peptide Label: isoform X1
- UniProtKB: P27597 (UniProtKB/Swiss-Prot),   A0A8C0JJG7 (UniProtKB/TrEMBL),   A0A8C0JL06 (UniProtKB/TrEMBL),   A0A8P0P8P7 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   ITAM

Promoters
RGD ID:13683134
Promoter ID:EPDNEW_C1204
Type:multiple initiation site
Name:CD3E_1
Description:CD3e molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1515,415,417 - 15,415,477EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012802 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00030008350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00040001243 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00805001732 UniProtKB/Swiss-Prot
  ENSCAFG00845002518 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020302.5 UniProtKB/Swiss-Prot
  ENSCAFT00000067558.2 UniProtKB/TrEMBL
  ENSCAFT00000085628.2 UniProtKB/TrEMBL
  ENSCAFT00000089459.2 UniProtKB/TrEMBL
  ENSCAFT00030015394.1 UniProtKB/Swiss-Prot
  ENSCAFT00030015465.1 UniProtKB/TrEMBL
  ENSCAFT00040002328.1 UniProtKB/Swiss-Prot
  ENSCAFT00040002338.1 UniProtKB/TrEMBL
  ENSCAFT00805003163 UniProtKB/Swiss-Prot
  ENSCAFT00845004444.1 UniProtKB/TrEMBL
  ENSCAFT00845004457.1 UniProtKB/TrEMBL
  ENSCAFT00845004471 ENTREZGENE
  ENSCAFT00845004471.1 UniProtKB/TrEMBL
  ENSCAFT00845004491.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD3_esu/gsu/dsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phos_immunorcpt_sig_ITAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene CD3E ENTREZGENE
PANTHER PTHR10570 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ITAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ITAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ITAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A0A8C0JJG7 ENTREZGENE
  A0A8C0JL06 ENTREZGENE
  A0A8C0PTG9_CANLF UniProtKB/TrEMBL
  A0A8I3MGF0_CANLF UniProtKB/TrEMBL
  A0A8I3MJA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MN93_CANLF UniProtKB/TrEMBL
  A0A8P0NZJ5_CANLF UniProtKB/TrEMBL
  A0A8P0P8P7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T5G4_CANLF UniProtKB/TrEMBL
  CD3E_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:38955 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-28 CD3E  CD3 epsilon subunit of T-cell receptor complex  CD3E  CD3e molecule  Symbol and/or name change 19259463 PROVISIONAL