MDGA2 (MAM domain containing glycosylphosphatidylinositol anchor 2) - Rat Genome Database

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Gene: MDGA2 (MAM domain containing glycosylphosphatidylinositol anchor 2) Canis lupus familiaris
Analyze
Symbol: MDGA2
Name: MAM domain containing glycosylphosphatidylinositol anchor 2
RGD ID: 12234847
Description: INVOLVED IN gene expression (ortholog); motor behavior (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MAM domain-containing glycosylphosphatidylinositol anchor protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,827,284 - 24,608,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,832,475 - 24,607,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,999,793 - 24,785,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MDGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,827,284 - 24,608,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,832,475 - 24,607,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,999,793 - 24,785,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBIUU_Cfam_GSD_1.0
MDGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381446,839,623 - 47,675,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1446,840,092 - 47,675,605 (-)EnsemblGRCh38hg38GRCh38
GRCh371447,308,826 - 48,144,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361446,379,045 - 46,882,145 (-)NCBINCBI36Build 36hg18NCBI36
Build 341446,379,045 - 46,882,145NCBI
Celera1427,169,381 - 28,004,719 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1427,426,615 - 28,261,881 (-)NCBIHuRef
CHM1_11447,247,613 - 48,082,719 (-)NCBICHM1_1
T2T-CHM13v2.01441,038,514 - 41,874,449 (-)NCBIT2T-CHM13v2.0
Mdga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391266,512,832 - 67,269,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1266,512,834 - 67,269,323 (-)EnsemblGRCm39 Ensembl
GRCm381266,459,419 - 67,222,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1266,466,060 - 67,222,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv371267,572,169 - 68,322,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361267,389,787 - 68,139,808 (-)NCBIMGSCv36mm8
Celera1267,602,561 - 68,352,775 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1227.63NCBI
Mdga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8690,482,687 - 91,346,784 (-)NCBIGRCr8
mRatBN7.2684,746,422 - 85,608,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl684,761,941 - 85,608,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx685,123,229 - 85,979,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0685,422,600 - 86,278,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0684,864,059 - 85,717,130 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0688,442,620 - 89,292,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl688,447,749 - 88,917,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0697,916,163 - 98,773,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4688,155,407 - 89,020,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1688,158,867 - 89,024,155 (-)NCBI
Celera683,298,219 - 84,140,941 (-)NCBICelera
Cytogenetic Map6q24NCBI
Mdga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,449,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540914,684,252 - 15,449,388 (+)NCBIChiLan1.0ChiLan1.0
MDGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21547,971,234 - 48,818,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11447,187,743 - 48,036,253 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01427,434,904 - 28,274,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11445,752,214 - 46,584,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1445,752,214 - 46,583,991 (-)Ensemblpanpan1.1panPan2
Mdga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864055,878,524 - 56,640,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365832,048,733 - 2,804,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365832,048,655 - 2,804,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1176,770,071 - 177,593,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11176,770,045 - 177,595,012 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21196,939,349 - 197,065,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12423,853,710 - 24,705,276 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2423,856,533 - 24,318,531 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605312,230,959 - 13,075,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473120,951,954 - 21,754,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473120,951,651 - 21,760,267 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MDGA2
10054 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 3 6
Below cutoff 5 5 19 6 6 6 6 6 6 8 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038483177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002629112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005329342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005329343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005363219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005363220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005397675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005397676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005430964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005430965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000022485   ⟹   ENSCAFP00000020878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl823,832,475 - 24,607,866 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003709   ⟹   ENSCAFP00845002949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl823,999,793 - 24,785,345 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003721   ⟹   ENSCAFP00845002957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl823,999,793 - 24,444,324 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003752   ⟹   ENSCAFP00845002981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl824,000,933 - 24,444,324 (-)Ensembl
RefSeq Acc Id: XM_038483177   ⟹   XP_038339105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBI
RefSeq Acc Id: XM_038544626   ⟹   XP_038400554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBI
RefSeq Acc Id: XM_038586488   ⟹   XP_038442416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBI
RefSeq Acc Id: XM_038586492   ⟹   XP_038442420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBI
RefSeq Acc Id: XM_038608751   ⟹   XP_038464679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBI
RefSeq Acc Id: XM_038673550   ⟹   XP_038529478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBI
RefSeq Acc Id: XR_005329342
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBI
RefSeq Acc Id: XR_005329343
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBI
RefSeq Acc Id: XR_005363219
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBI
RefSeq Acc Id: XR_005363220
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBI
RefSeq Acc Id: XR_005397675
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBI
RefSeq Acc Id: XR_005397676
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBI
RefSeq Acc Id: XR_005430964
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBI
RefSeq Acc Id: XR_005430965
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000020878   ⟸   ENSCAFT00000022485
RefSeq Acc Id: XP_038339105   ⟸   XM_038483177
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038464679   ⟸   XM_038608751
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038529478   ⟸   XM_038673550
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M2J9 (UniProtKB/TrEMBL),   A0A8I3MK95 (UniProtKB/TrEMBL),   A0A8P0SIY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442420   ⟸   XM_038586492
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PIE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442416   ⟸   XM_038586488
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PIE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400554   ⟸   XM_038544626
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q607 (UniProtKB/TrEMBL),   A0A8P0SIY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002981   ⟸   ENSCAFT00845003752
RefSeq Acc Id: ENSCAFP00845002957   ⟸   ENSCAFT00845003721
RefSeq Acc Id: ENSCAFP00845002949   ⟸   ENSCAFT00845003709
Protein Domains
Fibronectin type-III   Ig-like   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014164 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000705 UniProtKB/TrEMBL
  ENSCAFG00040002365 UniProtKB/TrEMBL
  ENSCAFG00845002096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022485.5 UniProtKB/TrEMBL
  ENSCAFT00000099674.1 UniProtKB/TrEMBL
  ENSCAFT00030001329.1 UniProtKB/TrEMBL
  ENSCAFT00030001340.1 UniProtKB/TrEMBL
  ENSCAFT00040004594.1 UniProtKB/TrEMBL
  ENSCAFT00845003709 ENTREZGENE
  ENSCAFT00845003709.1 UniProtKB/TrEMBL
  ENSCAFT00845003721.1 UniProtKB/TrEMBL
  ENSCAFT00845003752.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
NCBI Gene MDGA2 ENTREZGENE
PANTHER IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/TrEMBL
  MAM DOMAIN CONTAINING GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR 2 UniProtKB/TrEMBL
  PROTEIN AMALGAM UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C0LVZ7_CANLF UniProtKB/TrEMBL
  A0A8C0M2J9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q607 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MK95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRZ6_CANLF UniProtKB/TrEMBL
  A0A8I3RS00_CANLF UniProtKB/TrEMBL
  A0A8P0PIE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SIY5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43102 ENTREZGENE