CCKAR (cholecystokinin A receptor) - Rat Genome Database

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Gene: CCKAR (cholecystokinin A receptor) Canis lupus familiaris
Analyze
Symbol: CCKAR
Name: cholecystokinin A receptor
RGD ID: 12224114
Description: ENCODES a protein that exhibits cholecystokinin receptor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); axonogenesis (ortholog); cellular response to hormone stimulus (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); cholelithiasis (ortholog); Gallbladder Neoplasms (ortholog); FOUND IN endosome (ortholog); terminal bouton (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCK-A receptor; CCK-AR; CCK1-R; cholecystokinin 1 receptor; cholecystokinin receptor type A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,010,700 - 84,019,066 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,010,205 - 84,021,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha386,523,114 - 86,531,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0384,979,595 - 84,989,334 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl384,978,882 - 84,990,505 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1384,102,638 - 84,110,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0384,222,497 - 84,230,820 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0384,607,068 - 84,615,397 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15765098   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCKAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,010,700 - 84,019,066 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,010,205 - 84,021,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha386,523,114 - 86,531,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0384,979,595 - 84,989,334 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl384,978,882 - 84,990,505 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1384,102,638 - 84,110,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0384,222,497 - 84,230,820 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0384,607,068 - 84,615,397 (+)NCBIUU_Cfam_GSD_1.0
CCKAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38426,481,396 - 26,490,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl426,481,396 - 26,490,484 (-)EnsemblGRCh38hg38GRCh38
GRCh37426,483,018 - 26,492,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36426,092,116 - 26,101,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 34426,159,286 - 26,168,311NCBI
Celera426,934,075 - 26,943,099 (-)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef425,821,291 - 25,830,315 (-)NCBIHuRef
CHM1_1426,484,379 - 26,493,404 (-)NCBICHM1_1
T2T-CHM13v2.0426,466,670 - 26,475,758 (-)NCBIT2T-CHM13v2.0
Cckar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39553,855,827 - 53,865,046 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl553,855,118 - 53,865,047 (-)EnsemblGRCm39 Ensembl
GRCm38553,698,485 - 53,707,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl553,697,776 - 53,707,705 (-)EnsemblGRCm38mm10GRCm38
MGSCv37554,089,724 - 54,098,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36553,986,735 - 53,996,350 (-)NCBIMGSCv36mm8
Celera551,081,684 - 51,090,889 (-)NCBICelera
Cytogenetic Map5C1NCBI
cM Map529.52NCBI
Cckar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81461,505,270 - 61,513,618 (+)NCBIGRCr8
mRatBN7.21457,292,397 - 57,300,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1457,292,397 - 57,300,747 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1461,699,304 - 61,707,579 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,001,655 - 63,009,913 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01459,398,438 - 59,406,696 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01459,610,939 - 59,619,786 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1459,611,434 - 59,619,783 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01459,691,504 - 59,747,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,052,510 - 62,057,201 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11462,054,843 - 62,064,735 (+)NCBI
Celera1456,400,364 - 56,408,663 (+)NCBICelera
RH 3.4 Map14455.67RGD
Cytogenetic Map14q11NCBI
Cckar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544318,737,974 - 18,748,727 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544318,738,029 - 18,748,684 (+)NCBIChiLan1.0ChiLan1.0
CCKAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2326,733,119 - 26,745,226 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1426,924,864 - 26,936,971 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0420,881,340 - 20,890,986 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1426,157,702 - 26,166,773 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl426,157,702 - 26,166,773 (-)Ensemblpanpan1.1panPan2
Cckar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528549,605,282 - 49,613,370 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364773,306,874 - 3,314,714 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364773,306,898 - 3,314,659 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCKAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl820,188,830 - 20,199,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1820,187,324 - 20,200,273 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2820,563,652 - 20,574,944 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCKAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12723,855,766 - 23,866,104 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2723,856,705 - 23,865,367 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604770,369,554 - 70,378,492 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cckar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247556,121,620 - 6,132,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247556,122,181 - 6,132,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCKAR
163 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 6 2 5
Below cutoff 5 5 16 6 4 6 6 6 7 8 10 6

Sequence


RefSeq Acc Id: ENSCAFT00000045520   ⟹   ENSCAFP00000036103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl384,010,205 - 84,021,293 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061954   ⟹   ENSCAFP00000059499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl384,010,205 - 84,021,293 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010420   ⟹   ENSCAFP00845008098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl384,978,882 - 84,990,505 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010437   ⟹   ENSCAFP00845008112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl384,978,882 - 84,990,505 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010451   ⟹   ENSCAFP00845008122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl384,978,882 - 84,988,278 (+)Ensembl
RefSeq Acc Id: NM_001012646   ⟹   NP_001012664
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1384,010,700 - 84,019,066 (+)NCBI
Dog10K_Boxer_Tasha386,523,114 - 86,531,436 (+)NCBI
ROS_Cfam_1.0384,979,718 - 84,988,278 (+)NCBI
UMICH_Zoey_3.1384,102,638 - 84,110,963 (+)NCBI
UNSW_CanFamBas_1.0384,222,497 - 84,230,820 (+)NCBI
UU_Cfam_GSD_1.0384,607,068 - 84,615,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038660510   ⟹   XP_038516438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0384,979,595 - 84,989,334 (+)NCBI
RefSeq Acc Id: NP_001012664   ⟸   NM_001012646
- UniProtKB: Q5D0K2 (UniProtKB/Swiss-Prot),   A0A8I3RSX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036103   ⟸   ENSCAFT00000045520
RefSeq Acc Id: ENSCAFP00000059499   ⟸   ENSCAFT00000061954
RefSeq Acc Id: XP_038516438   ⟸   XM_038660510
- Peptide Label: isoform X1
- UniProtKB: Q5D0K2 (UniProtKB/Swiss-Prot),   A0A8I3MQI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845008112   ⟸   ENSCAFT00845010437
RefSeq Acc Id: ENSCAFP00845008122   ⟸   ENSCAFT00845010451
RefSeq Acc Id: ENSCAFP00845008098   ⟸   ENSCAFT00845010420

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029430 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003122 UniProtKB/TrEMBL
  ENSCAFG00040001130 UniProtKB/TrEMBL
  ENSCAFG00845005880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000045520.3 UniProtKB/TrEMBL
  ENSCAFT00000061954.2 UniProtKB/TrEMBL
  ENSCAFT00030005848.1 UniProtKB/TrEMBL
  ENSCAFT00040002118.1 UniProtKB/TrEMBL
  ENSCAFT00845010420 ENTREZGENE
  ENSCAFT00845010420.1 UniProtKB/TrEMBL
  ENSCAFT00845010437 ENTREZGENE
  ENSCAFT00845010437.1 UniProtKB/TrEMBL
  ENSCAFT00845010451.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.670.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cholcskin_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cholcy_rcpt_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CholecystokininA_recpt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CholecystokininA_recpt_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:488846 UniProtKB/Swiss-Prot
NCBI Gene CCKAR ENTREZGENE
PANTHER CHOLECYSTOKININ RECEPTOR TYPE A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CholecysA-Rec_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CCYSTOKININR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CCYSTOKNINAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0M228_CANLF UniProtKB/TrEMBL
  A0A8I3MQI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RSX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RSY3_CANLF UniProtKB/TrEMBL
  A0A8P0NNG2_CANLF UniProtKB/TrEMBL
  CCKAR_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A8P0P8M3 UniProtKB/TrEMBL
VGNC ID VGNC:38879 ENTREZGENE