GRIA3 (glutamate ionotropic receptor AMPA type subunit 3) - Rat Genome Database

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Gene: GRIA3 (glutamate ionotropic receptor AMPA type subunit 3) Canis lupus familiaris
Analyze
Symbol: GRIA3
Name: glutamate ionotropic receptor AMPA type subunit 3
RGD ID: 12215651
Description: ENCODES a protein that exhibits AMPA glutamate receptor activity (ortholog); amyloid-beta binding (ortholog); glutamate-gated receptor activity (ortholog); INVOLVED IN regulation of receptor recycling (ortholog); response to fungicide (ortholog); response to lithium ion (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN asymmetric synapse (ortholog); dendrite (ortholog); dendritic shaft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate receptor 3; glutamate receptor, ionotrophic, AMPA 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X94,729,828 - 95,006,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX94,730,943 - 95,004,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX80,782,519 - 81,064,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X96,499,224 - 96,776,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX96,499,201 - 96,776,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X93,943,627 - 94,219,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X95,702,771 - 95,978,497 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X95,485,249 - 95,767,174 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GRIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X94,729,828 - 95,006,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX94,730,943 - 95,004,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX80,782,519 - 81,064,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X96,499,224 - 96,776,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX96,499,201 - 96,776,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X93,943,627 - 94,219,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X95,702,771 - 95,978,497 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X95,485,249 - 95,767,174 (+)NCBIUU_Cfam_GSD_1.0
GRIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,184,278 - 123,490,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX123,184,153 - 123,490,915 (+)EnsemblGRCh38hg38GRCh38
GRCh37X122,318,131 - 122,624,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X122,145,777 - 122,452,447 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X122,043,692 - 122,064,066NCBI
CeleraX122,704,041 - 123,010,712 (+)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX111,704,466 - 112,009,621 (+)NCBIHuRef
CHM1_1X122,228,980 - 122,535,894 (+)NCBICHM1_1
T2T-CHM13v2.0X121,492,985 - 121,799,656 (+)NCBIT2T-CHM13v2.0
Gria3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X40,489,351 - 40,767,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX40,489,731 - 40,767,478 (+)EnsemblGRCm39 Ensembl
GRCm38X41,400,819 - 41,678,601 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX41,400,854 - 41,678,601 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X38,754,481 - 39,031,778 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X37,646,141 - 37,923,227 (+)NCBIMGSCv36mm8
CeleraX28,988,899 - 29,264,344 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.19NCBI
Gria3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X125,103,975 - 125,369,690 (+)NCBIGRCr8
mRatBN7.2X120,238,515 - 120,504,106 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX120,238,534 - 120,504,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX122,364,427 - 122,627,112 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X125,885,906 - 126,148,553 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X123,482,751 - 123,745,405 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X127,561,843 - 127,829,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX127,562,660 - 127,829,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X127,655,758 - 127,922,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X3,452,523 - 3,718,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X3,460,084 - 3,724,042 (-)NCBI
CeleraX119,369,614 - 119,631,774 (+)NCBICelera
Cytogenetic MapXq35NCBI
Gria3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547311,281,379 - 11,574,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547311,283,642 - 11,574,836 (-)NCBIChiLan1.0ChiLan1.0
GRIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X122,656,097 - 122,963,692 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X122,659,758 - 122,967,298 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X112,380,229 - 112,687,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X122,562,571 - 122,870,130 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX122,562,330 - 122,870,130 (+)Ensemblpanpan1.1panPan2
Gria3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X93,664,315 - 93,937,477 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364797,050,016 - 7,323,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364797,050,018 - 7,323,047 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX100,827,461 - 101,109,207 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X100,827,293 - 101,109,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X115,591,526 - 115,873,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606535,883,967 - 36,191,270 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gria3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247971,775,071 - 2,169,286 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247971,775,105 - 2,167,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GRIA3
1404 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 10 10 1
Low 4 8 2 6 2 6 2 4 6
Below cutoff 1 5 4 4 4 6 8 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005641767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005641768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005641769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014111559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002624510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005309547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005352321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005386427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005420211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000029477   ⟹   ENSCAFP00000027400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX94,730,943 - 95,004,279 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078000   ⟹   ENSCAFP00000059374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX94,730,943 - 94,996,565 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086010   ⟹   ENSCAFP00000051225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX94,730,943 - 95,004,279 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043438   ⟹   ENSCAFP00845034031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX96,499,201 - 96,774,074 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043576   ⟹   ENSCAFP00845034137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX96,499,201 - 96,766,365 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043684   ⟹   ENSCAFP00845034227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX96,499,868 - 96,774,074 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043842   ⟹   ENSCAFP00845034357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX96,500,312 - 96,776,041 (+)Ensembl
RefSeq Acc Id: XM_005641767   ⟹   XP_005641824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,380 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,783,038 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005641768   ⟹   XP_005641825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,380 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,783,038 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005641769   ⟹   XP_005641826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,729,828 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,782,519 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014111559   ⟹   XP_013967034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,849 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,783,516 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022416438   ⟹   XP_022272146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,069 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,782,782 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038450793   ⟹   XP_038306721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,500,231 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038450794   ⟹   XP_038306722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,500,001 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038450795   ⟹   XP_038306723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,499,486 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038450796   ⟹   XP_038306724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,499,224 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038450797   ⟹   XP_038306725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,500,016 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038450798   ⟹   XP_038306726
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,500,230 - 96,776,045 (+)NCBI
RefSeq Acc Id: XM_038524262   ⟹   XP_038380190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,944,635 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038524263   ⟹   XP_038380191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,944,407 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038524264   ⟹   XP_038380192
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,943,888 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038524265   ⟹   XP_038380193
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,943,627 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038524266   ⟹   XP_038380194
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,944,422 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038524267   ⟹   XP_038380195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,944,634 - 94,219,547 (+)NCBI
RefSeq Acc Id: XM_038588232   ⟹   XP_038444160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,486,245 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038588233   ⟹   XP_038444161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,485,768 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038588234   ⟹   XP_038444162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,485,512 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038588235   ⟹   XP_038444163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,485,249 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038588236   ⟹   XP_038444164
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,485,768 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038588237   ⟹   XP_038444165
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,486,244 - 95,767,174 (+)NCBI
RefSeq Acc Id: XM_038652749   ⟹   XP_038508677
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,771 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_038652750   ⟹   XP_038508678
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,547 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_038652751   ⟹   XP_038508679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,031 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_038652752   ⟹   XP_038508680
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,702,771 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_038652753   ⟹   XP_038508681
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,562 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_038652755   ⟹   XP_038508683
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,771 - 95,978,497 (+)NCBI
RefSeq Acc Id: XM_846923   ⟹   XP_852016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,849 - 95,006,244 (+)NCBI
Dog10K_Boxer_TashaX80,783,517 - 81,064,503 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002624510
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X94,730,849 - 94,999,404 (+)NCBI
Dog10K_Boxer_TashaX80,783,516 - 81,057,663 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005309547
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X96,500,230 - 96,769,205 (+)NCBI
RefSeq Acc Id: XR_005352321
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X93,944,634 - 94,212,707 (+)NCBI
RefSeq Acc Id: XR_005386427
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X95,486,244 - 95,760,332 (+)NCBI
RefSeq Acc Id: XR_005420211
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X95,703,771 - 95,971,657 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005641824 (Get FASTA)   NCBI Sequence Viewer  
  XP_005641825 (Get FASTA)   NCBI Sequence Viewer  
  XP_005641826 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967034 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306722 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306723 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306724 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306725 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306726 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444164 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508677 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508678 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508679 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508680 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508681 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508683 (Get FASTA)   NCBI Sequence Viewer  
  XP_852016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000027400.3
  ENSCAFP00000051225.1
  ENSCAFP00000059374.1
  ENSCAFP00000071573.1
  ENSCAFP00040027333.1
  ENSCAFP00040027498.1
  ENSCAFP00040027583.1
  ENSCAFP00845034031
  ENSCAFP00845034031.1
  ENSCAFP00845034137
  ENSCAFP00845034137.1
  ENSCAFP00845034227
  ENSCAFP00845034227.1
  ENSCAFP00845034357.1
Reference Protein Sequences
RefSeq Acc Id: XP_005641826   ⟸   XM_005641769
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005641824   ⟸   XM_005641767
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005641825   ⟸   XM_005641768
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967034   ⟸   XM_014111559
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JQP4 (UniProtKB/TrEMBL),   A0A8C0SX82 (UniProtKB/TrEMBL),   A0A8I3PN71 (UniProtKB/TrEMBL),   A0A8I3S8X9 (UniProtKB/TrEMBL),   A0A8P0TPT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_852016   ⟸   XM_846923
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272146   ⟸   XM_022416438
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000027400   ⟸   ENSCAFT00000029477
RefSeq Acc Id: ENSCAFP00000059374   ⟸   ENSCAFT00000078000
RefSeq Acc Id: ENSCAFP00000051225   ⟸   ENSCAFT00000086010
RefSeq Acc Id: XP_038380193   ⟸   XM_038524265
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038380192   ⟸   XM_038524264
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038380191   ⟸   XM_038524263
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038380194   ⟸   XM_038524266
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038380195   ⟸   XM_038524267
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038380190   ⟸   XM_038524262
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508680   ⟸   XM_038652752
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508679   ⟸   XM_038652751
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508678   ⟸   XM_038652750
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508681   ⟸   XM_038652753
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508683   ⟸   XM_038652755
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038508677   ⟸   XM_038652749
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038306724   ⟸   XM_038450796
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306723   ⟸   XM_038450795
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306722   ⟸   XM_038450794
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306725   ⟸   XM_038450797
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306726   ⟸   XM_038450798
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JQP4 (UniProtKB/TrEMBL),   A0A8C0SX82 (UniProtKB/TrEMBL),   A0A8I3PN71 (UniProtKB/TrEMBL),   A0A8I3S8X9 (UniProtKB/TrEMBL),   A0A8P0TPT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306721   ⟸   XM_038450793
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL),   A0A8C0JRU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444163   ⟸   XM_038588235
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRU6 (UniProtKB/TrEMBL),   A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444162   ⟸   XM_038588234
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRU6 (UniProtKB/TrEMBL),   A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444161   ⟸   XM_038588233
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRU6 (UniProtKB/TrEMBL),   A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444164   ⟸   XM_038588236
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRU6 (UniProtKB/TrEMBL),   A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444165   ⟸   XM_038588237
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JQP4 (UniProtKB/TrEMBL),   A0A8C0SX82 (UniProtKB/TrEMBL),   A0A8I3PN71 (UniProtKB/TrEMBL),   A0A8I3S8X9 (UniProtKB/TrEMBL),   A0A8P0TPT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444160   ⟸   XM_038588232
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRU6 (UniProtKB/TrEMBL),   A0A8C0SXI9 (UniProtKB/TrEMBL),   A0A8I3PJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034031   ⟸   ENSCAFT00845043438
RefSeq Acc Id: ENSCAFP00845034227   ⟸   ENSCAFT00845043684
RefSeq Acc Id: ENSCAFP00845034357   ⟸   ENSCAFT00845043842
RefSeq Acc Id: ENSCAFP00845034137   ⟸   ENSCAFT00845043576
Protein Domains
Ionotropic glutamate receptor C-terminal   Ionotropic glutamate receptor L-glutamate and


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018564 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040016998 UniProtKB/TrEMBL
  ENSCAFG00845024601 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029477.5 UniProtKB/TrEMBL
  ENSCAFT00000078000.2 UniProtKB/TrEMBL
  ENSCAFT00000086010.2 UniProtKB/TrEMBL
  ENSCAFT00000101877.1 UniProtKB/TrEMBL
  ENSCAFT00040031428.1 UniProtKB/TrEMBL
  ENSCAFT00040031624.1 UniProtKB/TrEMBL
  ENSCAFT00040031722.1 UniProtKB/TrEMBL
  ENSCAFT00845043438 ENTREZGENE
  ENSCAFT00845043438.1 UniProtKB/TrEMBL
  ENSCAFT00845043576 ENTREZGENE
  ENSCAFT00845043576.1 UniProtKB/TrEMBL
  ENSCAFT00845043684 ENTREZGENE
  ENSCAFT00845043684.1 UniProtKB/TrEMBL
  ENSCAFT00845043842.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
  Solute-binding_3/MltF_N UniProtKB/TrEMBL
KEGG Report cfa:492110 UniProtKB/TrEMBL
NCBI Gene GRIA3 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR 3 UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Lig_chan UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/TrEMBL
  SBP_bac_3 UniProtKB/TrEMBL
PRINTS NMDARECEPTOR UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/TrEMBL
  PBPe UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF53822 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C0JQP4 ENTREZGENE
  A0A8C0JRU6 ENTREZGENE
  A0A8C0SVK7_CANLF UniProtKB/TrEMBL
  A0A8C0SX82 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SXI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJ11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PN71 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRA1_CANLF UniProtKB/TrEMBL
  A0A8I3S8X9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TPT8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41482 ENTREZGENE