CD200 (CD200 molecule) - Rat Genome Database

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Gene: CD200 (CD200 molecule) Canis lupus familiaris
Analyze
Symbol: CD200
Name: CD200 molecule
RGD ID: 12205763
Description: ENCODES a protein that exhibits protein binding involved in heterotypic cell-cell adhesion (ortholog); INVOLVED IN cell-cell adhesion (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of interleukin-6 production (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); genetic disease (ortholog); FOUND IN neuron projection (ortholog); postsynaptic density (ortholog); presynaptic active zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OX-2 membrane glycoprotein
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,872,849 - 16,892,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,873,048 - 16,890,954 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3316,975,655 - 17,001,572 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03317,116,263 - 17,142,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,116,357 - 17,136,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13316,921,533 - 16,947,516 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03316,968,748 - 16,994,765 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03317,517,917 - 17,543,967 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD200
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,872,849 - 16,892,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,873,048 - 16,890,954 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3316,975,655 - 17,001,572 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03317,116,263 - 17,142,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,116,357 - 17,136,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13316,921,533 - 16,947,516 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03316,968,748 - 16,994,765 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03317,517,917 - 17,543,967 (+)NCBIUU_Cfam_GSD_1.0
CD200
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383112,332,573 - 112,362,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3112,332,347 - 112,362,812 (+)EnsemblGRCh38hg38GRCh38
GRCh373112,051,420 - 112,081,659 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,534,606 - 113,564,349 (+)NCBINCBI36Build 36hg18NCBI36
Celera3110,460,648 - 110,490,361 (+)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3109,436,001 - 109,465,715 (+)NCBIHuRef
CHM1_13112,015,971 - 112,045,683 (+)NCBICHM1_1
T2T-CHM13v2.03115,053,635 - 115,083,861 (+)NCBIT2T-CHM13v2.0
Cd200
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391645,202,474 - 45,229,419 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1645,202,498 - 45,229,416 (-)EnsemblGRCm39 Ensembl
GRCm381645,382,111 - 45,409,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,382,135 - 45,409,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371645,382,248 - 45,409,166 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361645,301,440 - 45,328,223 (-)NCBIMGSCv36mm8
Celera1645,782,157 - 45,809,002 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1629.53NCBI
Cd200
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,916,200 - 68,943,570 (+)NCBIGRCr8
mRatBN7.21155,410,166 - 55,437,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,410,196 - 55,501,648 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,224,976 - 64,251,219 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01156,886,834 - 56,913,080 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01155,959,450 - 55,986,668 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,371,617 - 60,398,450 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,371,684 - 60,403,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01164,474,114 - 64,501,029 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,946,504 - 56,974,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,004,092 - 57,031,845 (+)NCBI
Celera1154,978,287 - 55,004,105 (+)NCBICelera
Cytogenetic Map11q21NCBI
CD200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22110,334,631 - 110,365,077 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13110,339,408 - 110,369,857 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03109,481,067 - 109,511,261 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13116,404,606 - 116,434,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3116,404,728 - 116,434,363 (+)Ensemblpanpan1.1panPan2
Cd200
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,487,118 - 137,513,588 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,262 - 35,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,337 - 33,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD200
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,465,863 - 147,486,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113147,465,858 - 147,485,818 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213157,173,775 - 157,193,532 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD200
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,429,544 - 68,459,711 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2268,426,459 - 68,459,616 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604198,009,245 - 98,038,967 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd200
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473136,223,673 - 36,251,542 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473136,224,360 - 36,251,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD200
289 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 2 10 6 6 12 9 6
Low 1 3 12 6 6 6 8 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005639479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005306331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005317215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005349413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005383317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005417003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016624   ⟹   ENSCAFP00000015384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3316,873,048 - 16,890,954 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051908   ⟹   ENSCAFP00845040724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3317,116,357 - 17,136,128 (+)Ensembl
RefSeq Acc Id: XM_038444916   ⟹   XP_038300844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03317,116,263 - 17,136,133 (+)NCBI
RefSeq Acc Id: XM_038462417   ⟹   XP_038318345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3316,975,655 - 16,995,445 (+)NCBI
RefSeq Acc Id: XM_038519217   ⟹   XP_038375145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13316,921,533 - 16,941,284 (+)NCBI
RefSeq Acc Id: XM_038582808   ⟹   XP_038438736
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03317,517,917 - 17,537,838 (+)NCBI
RefSeq Acc Id: XM_038647205   ⟹   XP_038503133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03316,968,748 - 16,988,629 (+)NCBI
RefSeq Acc Id: XR_005306331
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03317,116,263 - 17,142,263 (+)NCBI
RefSeq Acc Id: XR_005317215
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3316,975,655 - 17,001,572 (+)NCBI
RefSeq Acc Id: XR_005349413
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13316,921,533 - 16,947,516 (+)NCBI
RefSeq Acc Id: XR_005383317
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03317,517,917 - 17,543,967 (+)NCBI
RefSeq Acc Id: XR_005417003
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03316,968,748 - 16,994,765 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000015384   ⟸   ENSCAFT00000016624
RefSeq Acc Id: XP_038375145   ⟸   XM_038519217
RefSeq Acc Id: XP_038503133   ⟸   XM_038647205
RefSeq Acc Id: XP_038300844   ⟸   XM_038444916
- UniProtKB: A0A8C0QWT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318345   ⟸   XM_038462417
- UniProtKB: A0A8C0QWT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438736   ⟸   XM_038582808
- UniProtKB: A0A8C0K3P1 (UniProtKB/TrEMBL),   A0A8C0QWT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845040724   ⟸   ENSCAFT00845051908
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010469 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023377 UniProtKB/TrEMBL
  ENSCAFG00040022963 UniProtKB/TrEMBL
  ENSCAFG00845029323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016624.5 UniProtKB/TrEMBL
  ENSCAFT00030043027.1 UniProtKB/TrEMBL
  ENSCAFT00040042742.1 UniProtKB/TrEMBL
  ENSCAFT00845051908 ENTREZGENE
  ENSCAFT00845051908.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD200 UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
  OX2G-like UniProtKB/TrEMBL
NCBI Gene CD200 ENTREZGENE
PANTHER OX-2 MEMBRANE GLYCOPROTEIN UniProtKB/TrEMBL
  PTHR46841:SF3 UniProtKB/TrEMBL
Pfam PF00047 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0K3P1 ENTREZGENE
  A0A8C0QWT7 ENTREZGENE
  A0A8C0TJR5_CANLF UniProtKB/TrEMBL
  A0A8I3SC89_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38938 ENTREZGENE