GPR183 (G protein-coupled receptor 183) - Rat Genome Database

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Gene: GPR183 (G protein-coupled receptor 183) Canis lupus familiaris
Analyze
Symbol: GPR183
Name: G protein-coupled receptor 183
RGD ID: 12196417
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); oxysterol binding (inferred); INVOLVED IN leukocyte chemotaxis (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G-protein coupled receptor 183
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,332,665 - 49,347,721 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,333,188 - 49,347,593 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,113,865 - 49,128,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02249,773,993 - 49,789,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2249,774,006 - 49,789,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12249,425,293 - 49,440,355 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02249,459,634 - 49,474,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02249,495,775 - 49,510,831 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPR183
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,332,665 - 49,347,721 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,333,188 - 49,347,593 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,113,865 - 49,128,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02249,773,993 - 49,789,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2249,774,006 - 49,789,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12249,425,293 - 49,440,355 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02249,459,634 - 49,474,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02249,495,775 - 49,510,831 (-)NCBIUU_Cfam_GSD_1.0
GPR183
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381399,294,539 - 99,307,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1399,294,539 - 99,307,399 (-)EnsemblGRCh38hg38GRCh38
GRCh371399,946,793 - 99,959,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,744,790 - 98,757,695 (-)NCBINCBI36Build 36hg18NCBI36
Build 341398,744,790 - 98,757,695NCBI
Celera1380,790,353 - 80,803,314 (-)NCBICelera
Cytogenetic Map13q32.3NCBI
HuRef1380,541,169 - 80,554,130 (-)NCBIHuRef
CHM1_11399,916,965 - 99,929,926 (-)NCBICHM1_1
T2T-CHM13v2.01398,504,775 - 98,517,640 (-)NCBIT2T-CHM13v2.0
Gpr183
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,189,743 - 122,202,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14122,189,963 - 122,202,607 (-)EnsemblGRCm39 Ensembl
GRCm3814121,952,331 - 121,965,193 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,952,551 - 121,965,195 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714122,351,553 - 122,364,415 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614121,087,511 - 121,100,373 (-)NCBIMGSCv36mm8
Celera14120,513,847 - 120,526,678 (-)NCBICelera
Cytogenetic Map14E5NCBI
cM Map1465.86NCBI
Gpr183
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815105,445,129 - 105,457,192 (-)NCBIGRCr8
mRatBN7.21599,037,764 - 99,050,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1599,036,367 - 99,050,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15102,972,724 - 102,984,243 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015104,064,748 - 104,076,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015100,992,568 - 101,004,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015108,364,701 - 108,376,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,364,701 - 108,376,221 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,751,148 - 111,763,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,056,367 - 107,067,887 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1597,811,478 - 97,823,000 (-)NCBICelera
Cytogenetic Map15q25NCBI
Gpr183
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,264,954 - 11,277,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,264,954 - 11,277,531 (+)NCBIChiLan1.0ChiLan1.0
GPR183
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214100,818,658 - 100,837,495 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11399,485,636 - 99,498,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01380,461,908 - 80,475,046 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11399,600,695 - 99,613,671 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,601,220 - 99,602,305 (-)Ensemblpanpan1.1panPan2
Gpr183
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,753,026 - 184,765,923 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647211,186,267 - 11,198,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647211,196,567 - 11,198,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR183
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,231,224 - 68,245,751 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,231,851 - 68,248,627 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,527,987 - 75,529,869 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR183
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,952,689 - 77,966,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl377,953,212 - 77,954,297 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604634,448,232 - 34,461,198 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in GPR183
149 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 1
Low 5 5 11 3 3 6 9 5
Below cutoff 11 3 3 5 12 8 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005634044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005634045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000009345   ⟹   ENSCAFP00000008673
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2249,333,188 - 49,347,593 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845038796   ⟹   ENSCAFP00845030380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2249,774,006 - 49,789,026 (-)Ensembl
RefSeq Acc Id: XM_005634044   ⟹   XP_005634101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12249,332,665 - 49,347,721 (-)NCBI
Dog10K_Boxer_Tasha2249,113,865 - 49,128,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038431357   ⟹   XP_038287285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02249,773,993 - 49,789,033 (-)NCBI
RefSeq Acc Id: XM_038431358   ⟹   XP_038287286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02249,773,993 - 49,789,024 (-)NCBI
RefSeq Acc Id: XM_038431359   ⟹   XP_038287287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02249,773,993 - 49,789,040 (-)NCBI
RefSeq Acc Id: XM_038456609   ⟹   XP_038312537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2249,113,865 - 49,128,917 (-)NCBI
RefSeq Acc Id: XM_038456610   ⟹   XP_038312538
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2249,113,865 - 49,128,934 (-)NCBI
RefSeq Acc Id: XM_038506743   ⟹   XP_038362671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12249,425,293 - 49,440,348 (-)NCBI
RefSeq Acc Id: XM_038506745   ⟹   XP_038362673
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12249,425,293 - 49,440,338 (-)NCBI
RefSeq Acc Id: XM_038506746   ⟹   XP_038362674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12249,425,293 - 49,440,355 (-)NCBI
RefSeq Acc Id: XM_038569940   ⟹   XP_038425868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02249,495,775 - 49,510,824 (-)NCBI
RefSeq Acc Id: XM_038569941   ⟹   XP_038425869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02249,495,775 - 49,510,815 (-)NCBI
RefSeq Acc Id: XM_038569942   ⟹   XP_038425870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02249,495,775 - 49,510,831 (-)NCBI
RefSeq Acc Id: XM_038634100   ⟹   XP_038490028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02249,459,634 - 49,474,704 (-)NCBI
RefSeq Acc Id: XM_038634101   ⟹   XP_038490029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02249,459,634 - 49,474,695 (-)NCBI
RefSeq Acc Id: XM_038634102   ⟹   XP_038490030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02249,459,634 - 49,474,711 (-)NCBI
RefSeq Acc Id: XP_005634101   ⟸   XM_005634044
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LF40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000008673   ⟸   ENSCAFT00000009345
RefSeq Acc Id: XP_038362674   ⟸   XM_038506746
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038362671   ⟸   XM_038506743
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038362673   ⟸   XM_038506745
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038490030   ⟸   XM_038634102
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038490028   ⟸   XM_038634100
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038490029   ⟸   XM_038634101
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038287287   ⟸   XM_038431359
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PIK0 (UniProtKB/TrEMBL),   A0A8C0LF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038287285   ⟸   XM_038431357
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TPA6 (UniProtKB/TrEMBL),   A0A8C0LF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038287286   ⟸   XM_038431358
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PIK0 (UniProtKB/TrEMBL),   A0A8C0LF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038312538   ⟸   XM_038456610
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SBD6 (UniProtKB/TrEMBL),   A0A8C0LF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038312537   ⟸   XM_038456609
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SBD6 (UniProtKB/TrEMBL),   A0A8C0LF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425870   ⟸   XM_038569942
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LF40 (UniProtKB/TrEMBL),   A0A8I3PIK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425868   ⟸   XM_038569940
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LF40 (UniProtKB/TrEMBL),   A0A8C0TPA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425869   ⟸   XM_038569941
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LF40 (UniProtKB/TrEMBL),   A0A8I3PIK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845030380   ⟸   ENSCAFT00845038796

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005802 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006731 UniProtKB/TrEMBL
  ENSCAFG00040023645 UniProtKB/TrEMBL
  ENSCAFG00845021998 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009345.6 UniProtKB/TrEMBL
  ENSCAFT00030012372.1 UniProtKB/TrEMBL
  ENSCAFT00040044021.1 UniProtKB/TrEMBL
  ENSCAFT00845038796 ENTREZGENE
  ENSCAFT00845038796.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GP183-like UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report cfa:102154241 UniProtKB/TrEMBL
NCBI Gene GPR183 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 183 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  P2YPURNOCPTR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0LF40 ENTREZGENE
  A0A8C0TPA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIK0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SBD6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41423 ENTREZGENE