NHERF2 (NHERF family PDZ scaffold protein 2) - Rat Genome Database

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Gene: NHERF2 (NHERF family PDZ scaffold protein 2) Canis lupus familiaris
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Symbol: NHERF2
Name: NHERF family PDZ scaffold protein 2
RGD ID: 12194536
Description: ENCODES a protein that exhibits low-density lipoprotein particle receptor binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN inner ear development (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); PARTICIPATES IN parathyroid hormone signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); hypertension (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Na(+)/H(+) exchange regulatory cofactor NHE-RF2; SLC9A3 regulator 2; SLC9A3R2; solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,905,070 - 38,915,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,905,635 - 38,942,774 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,144,686 - 40,155,043 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,214,038 - 39,216,647 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,213,735 - 39,216,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,898,838 - 38,909,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,871,153 - 38,881,488 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,349,958 - 39,360,323 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:20663896   PMID:22301917   PMID:23200831   PMID:30032202  


Genomics

Comparative Map Data
NHERF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,905,070 - 38,915,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,905,635 - 38,942,774 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,144,686 - 40,155,043 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,214,038 - 39,216,647 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,213,735 - 39,216,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,898,838 - 38,909,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,871,153 - 38,881,488 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,349,958 - 39,360,323 (-)NCBIUU_Cfam_GSD_1.0
NHERF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,026,902 - 2,039,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,025,356 - 2,039,026 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,076,903 - 2,089,027 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,016,930 - 2,028,484 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,016,911 - 2,028,481NCBI
Celera162,289,067 - 2,301,134 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,001,109 - 2,013,254 (+)NCBIHuRef
CHM1_1162,076,850 - 2,089,007 (+)NCBICHM1_1
T2T-CHM13v2.0162,046,859 - 2,058,835 (+)NCBIT2T-CHM13v2.0
Nherf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,858,255 - 24,869,279 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,858,260 - 24,869,301 (-)EnsemblGRCm39 Ensembl
GRCm381724,639,281 - 24,650,305 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,639,286 - 24,650,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,776,227 - 24,787,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,366,888 - 24,377,878 (-)NCBIMGSCv36mm8
Celera1725,161,671 - 25,172,581 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.43NCBI
Nherf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,167,005 - 14,177,519 (-)NCBIGRCr8
mRatBN7.21013,662,461 - 13,672,975 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,662,461 - 13,673,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,409,255 - 18,419,776 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,898,101 - 17,908,626 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,397,300 - 13,407,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,003,330 - 14,015,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,003,320 - 14,013,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,820,310 - 13,830,824 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,890,293 - 13,900,807 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,891,061 - 13,900,879 (-)NCBI
Celera1013,342,543 - 13,353,058 (-)NCBICelera
Cytogenetic Map10q12NCBI
Nherf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,224,214 - 15,235,379 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,224,214 - 15,235,372 (-)NCBIChiLan1.0ChiLan1.0
NHERF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,307,556 - 2,319,737 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,089,244 - 6,101,377 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016664,310 - 676,640 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,121,215 - 2,127,069 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,115,583 - 2,127,069 (+)Ensemblpanpan1.1panPan2
Nherf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,703,346 - 104,707,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,000,854 - 2,006,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,000,977 - 2,006,102 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHERF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,942,367 - 39,952,825 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,942,366 - 39,952,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,205,136 - 42,239,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHERF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,923,773 - 1,935,641 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,924,131 - 1,939,062 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,129,026 - 29,140,946 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nherf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913210,315 - 221,538 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913210,315 - 220,936 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NHERF2
100 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000030930   ⟹   ENSCAFP00000028764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,905,938 - 38,915,028 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000043424   ⟹   ENSCAFP00000041636
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,905,969 - 38,915,028 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072439   ⟹   ENSCAFP00000057694
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,905,635 - 38,914,935 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077331   ⟹   ENSCAFP00000061476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,905,938 - 38,929,370 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090994   ⟹   ENSCAFP00000046144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,905,938 - 38,942,774 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030141   ⟹   ENSCAFP00845023642
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,213,735 - 39,216,642 (-)Ensembl
RefSeq Acc Id: NM_001284463   ⟹   NP_001271392
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,905,938 - 38,915,028 (-)NCBI
Dog10K_Boxer_Tasha640,144,686 - 40,155,043 (-)NCBI
ROS_Cfam_1.0639,214,038 - 39,216,647 (-)NCBI
UMICH_Zoey_3.1638,898,838 - 38,909,179 (-)NCBI
UNSW_CanFamBas_1.0638,871,153 - 38,881,488 (-)NCBI
UU_Cfam_GSD_1.0639,349,958 - 39,360,323 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001271392   ⟸   NM_001284463
- UniProtKB: F1Q039 (UniProtKB/TrEMBL),   A0A8C0LNX9 (UniProtKB/TrEMBL),   A0A8C0LVM1 (UniProtKB/TrEMBL),   I2FJU2 (UniProtKB/TrEMBL),   A0A8C0PW39 (UniProtKB/TrEMBL),   A0A8P0SNG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028764   ⟸   ENSCAFT00000030930
RefSeq Acc Id: ENSCAFP00000061476   ⟸   ENSCAFT00000077331
RefSeq Acc Id: ENSCAFP00000057694   ⟸   ENSCAFT00000072439
RefSeq Acc Id: ENSCAFP00000041636   ⟸   ENSCAFT00000043424
RefSeq Acc Id: ENSCAFP00000046144   ⟸   ENSCAFT00000090994
RefSeq Acc Id: ENSCAFP00845023642   ⟸   ENSCAFT00845030141
Protein Domains
PDZ

Promoters
RGD ID:13683735
Promoter ID:EPDNEW_C1803
Type:single initiation site
Name:SLC9A3R2_1
Description:SLC9A3 regulator 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,914,952 - 38,915,012EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019449 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000138 UniProtKB/TrEMBL
  ENSCAFG00040000769 UniProtKB/TrEMBL
  ENSCAFG00845017011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030930.6 UniProtKB/TrEMBL
  ENSCAFT00000043424.3 UniProtKB/TrEMBL
  ENSCAFT00000077331.2 UniProtKB/TrEMBL
  ENSCAFT00000090994.2 UniProtKB/TrEMBL
  ENSCAFT00030000198.1 UniProtKB/TrEMBL
  ENSCAFT00030000218.1 UniProtKB/TrEMBL
  ENSCAFT00030000226.1 UniProtKB/TrEMBL
  ENSCAFT00030000251.1 UniProtKB/TrEMBL
  ENSCAFT00040001417.1 UniProtKB/TrEMBL
  ENSCAFT00040001523.1 UniProtKB/TrEMBL
  ENSCAFT00040001533.1 UniProtKB/TrEMBL
  ENSCAFT00845030141 ENTREZGENE
  ENSCAFT00845030141.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro EBP50_C-term UniProtKB/TrEMBL
  NHERF-1/NHERF-2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report cfa:479884 UniProtKB/TrEMBL
NCBI Gene SLC9A3R2 ENTREZGENE
PANTHER PDZ DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR14191:SF4 UniProtKB/TrEMBL
Pfam EBP50_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PIRSF EBP50 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A8C0LNX9 ENTREZGENE
  A0A8C0LR33_CANLF UniProtKB/TrEMBL
  A0A8C0LVM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PW39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RUZ4_CANLF UniProtKB/TrEMBL
  A0A8I3P349_CANLF UniProtKB/TrEMBL
  A0A8P0SNG8 ENTREZGENE
  A0A8P0SVJ4_CANLF UniProtKB/TrEMBL
  A0A8P0SZ56_CANLF UniProtKB/TrEMBL
  F1Q039 ENTREZGENE, UniProtKB/TrEMBL
  I2FJU2 ENTREZGENE
UniProt Secondary A0A8P0PAB3 UniProtKB/TrEMBL
  A0A8P0SNG8 UniProtKB/TrEMBL
  I2FJU2 UniProtKB/TrEMBL
VGNC ID VGNC:46486 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-12-12 NHERF2  NHERF family PDZ scaffold protein 2  SLC9A3R2  SLC9A3 regulator 2  Symbol and/or name change 19259463 PROVISIONAL