CAMK2A (calcium/calmodulin dependent protein kinase II alpha) - Rat Genome Database

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Gene: CAMK2A (calcium/calmodulin dependent protein kinase II alpha) Canis lupus familiaris
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Symbol: CAMK2A
Name: calcium/calmodulin dependent protein kinase II alpha
RGD ID: 12158691
Description: ENCODES a protein that exhibits calcium-dependent protein serine/threonine kinase activity (ortholog); calmodulin-dependent protein kinase activity (ortholog); glutamate receptor binding (ortholog); INVOLVED IN calcium ion transport (ortholog); calmodulin dependent kinase signaling pathway (ortholog); dendrite morphogenesis (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; fibroblast growth factor signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 53 (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); dendrite cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha; calcium/calmodulin-dependent protein kinase type II subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,800,818 - 58,865,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,800,813 - 58,865,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,567,052 - 58,631,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,281,664 - 59,346,612 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,281,703 - 59,346,615 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,070,398 - 59,135,346 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,184,686 - 59,249,804 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,715,947 - 59,780,872 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:17277017   PMID:17996739   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CAMK2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,800,818 - 58,865,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,800,813 - 58,865,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,567,052 - 58,631,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,281,664 - 59,346,612 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,281,703 - 59,346,615 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,070,398 - 59,135,346 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,184,686 - 59,249,804 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,715,947 - 59,780,872 (+)NCBIUU_Cfam_GSD_1.0
CAMK2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,219,491 - 150,290,130 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,219,491 - 150,290,093 (-)EnsemblGRCh38hg38GRCh38
GRCh375149,599,054 - 149,669,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,579,248 - 149,649,529 (-)NCBINCBI36Build 36hg18NCBI36
Build 345149,579,247 - 149,649,529NCBI
Celera5145,680,447 - 145,750,799 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,747,170 - 144,817,356 (-)NCBIHuRef
CHM1_15149,031,647 - 149,101,993 (-)NCBICHM1_1
T2T-CHM13v2.05150,756,093 - 150,826,669 (-)NCBIT2T-CHM13v2.0
Camk2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,058,704 - 61,121,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,058,690 - 61,121,224 (+)EnsemblGRCm39 Ensembl
GRCm381860,925,307 - 60,988,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,925,618 - 60,988,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv371861,085,286 - 61,147,806 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,051,001 - 61,113,513 (+)NCBIMGSCv36mm8
Celera1862,212,530 - 62,274,768 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
Camk2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,648,779 - 56,711,505 (+)NCBIGRCr8
mRatBN7.21854,378,642 - 54,441,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,378,784 - 54,438,994 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,467,554 - 56,526,074 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,182,163 - 57,240,684 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,002,670 - 55,061,881 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,193,978 - 56,295,869 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,193,978 - 56,295,869 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,428,487 - 55,463,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01855,514,559 - 55,529,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,879,247 - 56,948,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,951,478 - 57,020,769 (+)NCBI
Celera1852,533,226 - 52,592,130 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Camk2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,247,014 - 4,307,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,247,307 - 4,307,402 (+)NCBIChiLan1.0ChiLan1.0
CAMK2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,448,477 - 145,518,496 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,588,026 - 143,658,043 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,644,164 - 145,714,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,649,062 - 151,719,373 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,649,062 - 151,719,373 (-)Ensemblpanpan1.1panPan2
Camk2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,064,159 - 143,126,577 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,638,176 - 4,700,984 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,636,863 - 4,700,887 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,248,358 - 151,308,706 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,248,356 - 151,353,907 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22158,335,771 - 158,396,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,829,438 - 52,899,428 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,829,350 - 52,899,375 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,817,181 - 24,887,318 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camk2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,526,323 - 9,585,649 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,526,323 - 9,585,647 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CAMK2A
868 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 5 6 6
Low 3 16 2 6 6 1 10 6
Below cutoff 1 6 6 4 6 7

Sequence


RefSeq Acc Id: ENSCAFT00000028867   ⟹   ENSCAFP00000026845
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl458,800,813 - 58,865,830 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074251   ⟹   ENSCAFP00000059137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl458,800,813 - 58,865,830 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013798   ⟹   ENSCAFP00845010709
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl459,281,703 - 59,345,034 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013868   ⟹   ENSCAFP00845010756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl459,281,704 - 59,346,615 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013961   ⟹   ENSCAFP00845010820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl459,281,735 - 59,344,972 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845014060   ⟹   ENSCAFP00845010898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl459,299,217 - 59,345,034 (+)Ensembl
RefSeq Acc Id: XM_005619299   ⟹   XP_005619356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1458,800,818 - 58,865,830 (+)NCBI
Dog10K_Boxer_Tasha458,567,052 - 58,631,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005619301   ⟹   XP_005619358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1458,800,818 - 58,865,830 (+)NCBI
Dog10K_Boxer_Tasha458,567,052 - 58,631,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038473951   ⟹   XP_038329879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1459,070,398 - 59,135,346 (+)NCBI
RefSeq Acc Id: XM_038473952   ⟹   XP_038329880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1459,070,398 - 59,135,346 (+)NCBI
RefSeq Acc Id: XM_038535043   ⟹   XP_038390971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,715,947 - 59,780,872 (+)NCBI
RefSeq Acc Id: XM_038535044   ⟹   XP_038390972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,715,947 - 59,780,872 (+)NCBI
RefSeq Acc Id: XM_038599340   ⟹   XP_038455268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0459,184,686 - 59,249,804 (+)NCBI
RefSeq Acc Id: XM_038599341   ⟹   XP_038455269
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0459,184,686 - 59,249,804 (+)NCBI
RefSeq Acc Id: XM_038663651   ⟹   XP_038519579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0459,281,664 - 59,346,612 (+)NCBI
RefSeq Acc Id: XM_038663652   ⟹   XP_038519580
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0459,281,664 - 59,346,612 (+)NCBI
RefSeq Acc Id: XP_005619356   ⟸   XM_005619299
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S5Z7 (UniProtKB/TrEMBL),   A0A8I3MXQ9 (UniProtKB/TrEMBL),   A0A8C0M5D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005619358   ⟸   XM_005619301
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NIS8 (UniProtKB/TrEMBL),   A0A8P0P882 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000059137   ⟸   ENSCAFT00000074251
RefSeq Acc Id: ENSCAFP00000026845   ⟸   ENSCAFT00000028867
RefSeq Acc Id: XP_038329879   ⟸   XM_038473951
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329880   ⟸   XM_038473952
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455268   ⟸   XM_038599340
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455269   ⟸   XM_038599341
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038519579   ⟸   XM_038663651
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S5Z7 (UniProtKB/TrEMBL),   A0A8I3MXQ9 (UniProtKB/TrEMBL),   A0A8C0M5D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519580   ⟸   XM_038663652
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NIS8 (UniProtKB/TrEMBL),   A0A8P0P882 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390971   ⟸   XM_038535043
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M5D8 (UniProtKB/TrEMBL),   A0A8C0S5Z7 (UniProtKB/TrEMBL),   A0A8I3MXQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390972   ⟸   XM_038535044
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NIS8 (UniProtKB/TrEMBL),   A0A8P0P882 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845010709   ⟸   ENSCAFT00845013798
RefSeq Acc Id: ENSCAFP00845010756   ⟸   ENSCAFT00845013868
RefSeq Acc Id: ENSCAFP00845010820   ⟸   ENSCAFT00845013961
RefSeq Acc Id: ENSCAFP00845010898   ⟸   ENSCAFT00845014060
Protein Domains
Protein kinase

Promoters
RGD ID:13683029
Promoter ID:EPDNEW_C1096
Type:multiple initiation site
Name:CAMK2A_1
Description:calcium/calmodulin dependent protein kinase II alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1458,800,871 - 58,800,931EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018163 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002620 UniProtKB/TrEMBL
  ENSCAFG00040009949 UniProtKB/TrEMBL
  ENSCAFG00845007828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028867.5 UniProtKB/TrEMBL
  ENSCAFT00000074251.2 UniProtKB/TrEMBL
  ENSCAFT00000098654.1 UniProtKB/TrEMBL
  ENSCAFT00030004840.1 UniProtKB/TrEMBL
  ENSCAFT00030004885.1 UniProtKB/TrEMBL
  ENSCAFT00030004930.1 UniProtKB/TrEMBL
  ENSCAFT00040018438.1 UniProtKB/TrEMBL
  ENSCAFT00040018537.1 UniProtKB/TrEMBL
  ENSCAFT00040018728.1 UniProtKB/TrEMBL
  ENSCAFT00845013798 ENTREZGENE
  ENSCAFT00845013798.1 UniProtKB/TrEMBL
  ENSCAFT00845013868 ENTREZGENE
  ENSCAFT00845013868.1 UniProtKB/TrEMBL
  ENSCAFT00845013961.1 UniProtKB/TrEMBL
  ENSCAFT00845014060.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.50 UniProtKB/TrEMBL
  6.10.140.620 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Ca/CaM-dep_prot_kinase-assoc UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  NTF2-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report cfa:612941 UniProtKB/TrEMBL
NCBI Gene CAMK2A ENTREZGENE
PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II SUBUNIT ALPHA UniProtKB/TrEMBL
  CALCIUM_CALMODULIN-DEPENDENT PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
Pfam CaMKII_AD UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF54427 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A8C0M5D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M772_CANLF UniProtKB/TrEMBL
  A0A8C0S5Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MXQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N476_CANLF UniProtKB/TrEMBL
  A0A8I3N4Y8_CANLF UniProtKB/TrEMBL
  A0A8I3NIS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P882 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PPL2_CANLF UniProtKB/TrEMBL
  A0A8P0SMC0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38680 ENTREZGENE