ABCD1 (ATP binding cassette subfamily D member 1) - Rat Genome Database

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Gene: ABCD1 (ATP binding cassette subfamily D member 1) Canis lupus familiaris
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Symbol: ABCD1
Name: ATP binding cassette subfamily D member 1
RGD ID: 12148886
Description: ENCODES a protein that exhibits ATP binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN fatty acid beta-oxidation (inferred); fatty acid elongation (inferred); fatty acid homeostasis (inferred); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Addison's disease (ortholog); adrenoleukodystrophy (ortholog); autistic disorder (ortholog); FOUND IN peroxisomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family D member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,545,690 - 121,564,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,545,586 - 121,563,186 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,875,063 - 106,895,708 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,687,215 - 124,707,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,687,201 - 124,705,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,456,646 - 120,477,290 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,971,670 - 122,992,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,733,767 - 122,754,413 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,545,690 - 121,564,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,545,586 - 121,563,186 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,875,063 - 106,895,708 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,687,215 - 124,707,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,687,201 - 124,705,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,456,646 - 120,477,290 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,971,670 - 122,992,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,733,767 - 122,754,413 (+)NCBIUU_Cfam_GSD_1.0
ABCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,724,856 - 153,744,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,724,856 - 153,744,755 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,990,311 - 153,010,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,643,530 - 152,663,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,511,182 - 152,531,028NCBI
CeleraX153,224,004 - 153,243,898 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,647,579 - 141,667,479 (+)NCBIHuRef
CHM1_1X152,864,732 - 152,884,627 (+)NCBICHM1_1
T2T-CHM13v2.0X151,998,519 - 152,018,419 (+)NCBIT2T-CHM13v2.0
Abcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,760,203 - 72,782,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,760,203 - 72,782,140 (+)EnsemblGRCm39 Ensembl
GRCm38X73,716,597 - 73,738,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,716,597 - 73,738,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,961,936 - 70,983,626 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,969,317 - 69,991,007 (+)NCBIMGSCv36mm8
CeleraX64,970,295 - 64,991,971 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.39NCBI
Abcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,579,669 - 156,601,448 (+)NCBIGRCr8
mRatBN7.2X151,428,334 - 151,450,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,428,578 - 151,450,115 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,569,626 - 153,591,020 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,132,856 - 157,154,250 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,804,685 - 154,826,079 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,073,860 - 157,095,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX157,072,736 - 157,095,274 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,823,436 - 152,844,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,614,569 - 159,635,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1136,439,697 - 136,461,090 (-)NCBICelera
Cytogenetic MapXq37NCBI
Abcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580459,715 - 475,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580459,715 - 475,363 (+)NCBIChiLan1.0ChiLan1.0
ABCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,764,997 - 153,785,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,768,686 - 153,788,864 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,275,165 - 143,295,283 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,162,412 - 153,182,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,162,412 - 153,182,424 (+)Ensemblpanpan1.1panPan2
Abcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,877,295 - 118,896,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809615,139 - 635,990 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809615,133 - 634,618 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,485,076 - 124,501,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,485,076 - 124,501,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,049,646 - 142,066,321 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,152,697 - 128,171,007 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606566,018,682 - 66,038,332 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946421,132 - 440,075 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946421,113 - 439,961 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCD1
131 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 3 13 6 6 6 4 6 6
Low 3 2 9 6 6 8 8 4
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000030549   ⟹   ENSCAFP00000028386
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,545,586 - 121,563,186 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066589   ⟹   ENSCAFP00000046132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,545,586 - 121,560,717 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000072622   ⟹   ENSCAFP00000044617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,545,586 - 121,558,114 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075072   ⟹   ENSCAFP00000059722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,546,114 - 121,560,717 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042973   ⟹   ENSCAFP00845033689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX124,687,201 - 124,705,644 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043048   ⟹   ENSCAFP00845033750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX124,687,201 - 124,699,643 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043109   ⟹   ENSCAFP00845033796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX124,687,374 - 124,705,644 (+)Ensembl
RefSeq Acc Id: XM_005641997   ⟹   XP_005642054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X121,545,690 - 121,564,117 (+)NCBI
Dog10K_Boxer_TashaX106,875,063 - 106,895,708 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038451223   ⟹   XP_038307151
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X124,687,215 - 124,707,872 (+)NCBI
RefSeq Acc Id: XM_038524690   ⟹   XP_038380618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X120,456,646 - 120,477,290 (+)NCBI
RefSeq Acc Id: XM_038588655   ⟹   XP_038444583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X122,733,767 - 122,754,413 (+)NCBI
RefSeq Acc Id: XM_038653176   ⟹   XP_038509104
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X122,971,670 - 122,992,305 (+)NCBI
RefSeq Acc Id: XP_005642054   ⟸   XM_005641997
- UniProtKB: A0A8C0T0G0 (UniProtKB/TrEMBL),   A0A8I3PH78 (UniProtKB/TrEMBL),   A0A8C0T190 (UniProtKB/TrEMBL),   A0A8I3PLM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028386   ⟸   ENSCAFT00000030549
RefSeq Acc Id: ENSCAFP00000046132   ⟸   ENSCAFT00000066589
RefSeq Acc Id: ENSCAFP00000044617   ⟸   ENSCAFT00000072622
RefSeq Acc Id: ENSCAFP00000059722   ⟸   ENSCAFT00000075072
RefSeq Acc Id: XP_038380618   ⟸   XM_038524690
RefSeq Acc Id: XP_038509104   ⟸   XM_038653176
RefSeq Acc Id: XP_038307151   ⟸   XM_038451223
- UniProtKB: A0A8C0T0G0 (UniProtKB/TrEMBL),   A0A8I3PH78 (UniProtKB/TrEMBL),   A0A8C0T190 (UniProtKB/TrEMBL),   A0A8I3PLM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444583   ⟸   XM_038588655
- UniProtKB: A0A8C0T0G0 (UniProtKB/TrEMBL),   A0A8C0T190 (UniProtKB/TrEMBL),   A0A8I3PH78 (UniProtKB/TrEMBL),   A0A8I3PLM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033689   ⟸   ENSCAFT00845042973
RefSeq Acc Id: ENSCAFP00845033796   ⟸   ENSCAFT00845043109
RefSeq Acc Id: ENSCAFP00845033750   ⟸   ENSCAFT00845043048
Promoters
RGD ID:13689460
Promoter ID:EPDNEW_C7529
Type:multiple initiation site
Name:ABCD1_1
Description:ATP binding cassette subfamily D member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X121,545,708 - 121,545,768EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019247 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040017889 UniProtKB/TrEMBL
  ENSCAFG00845024327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030549.4 UniProtKB/TrEMBL
  ENSCAFT00000072622.2 UniProtKB/TrEMBL
  ENSCAFT00040033129.1 UniProtKB/TrEMBL
  ENSCAFT00040033201.1 UniProtKB/TrEMBL
  ENSCAFT00040033300.1 UniProtKB/TrEMBL
  ENSCAFT00040033350.1 UniProtKB/TrEMBL
  ENSCAFT00845042973 ENTREZGENE
  ENSCAFT00845042973.1 UniProtKB/TrEMBL
  ENSCAFT00845043048.1 UniProtKB/TrEMBL
  ENSCAFT00845043109.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  FA_transporter UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report cfa:612520 UniProtKB/TrEMBL
NCBI Gene ABCD1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER UniProtKB/TrEMBL
  PTHR11384:SF21 UniProtKB/TrEMBL
Pfam ABC_membrane_2 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A8C0T0G0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T0X2_CANLF UniProtKB/TrEMBL
  A0A8C0T190 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z164_CANLF UniProtKB/TrEMBL
  A0A8I3PH78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PHD4_CANLF UniProtKB/TrEMBL
  A0A8I3PLM4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37445 ENTREZGENE