SLC19A2 (solute carrier family 19 member 2)

Gene: SLC19A2 (solute carrier family 19 member 2) Canis lupus familiaris

Analyze

Symbol:

SLC19A2

Name:

solute carrier family 19 member 2

RGD ID:

12124877

Description:

ENCODES a protein that exhibits thiamine transmembrane transporter activity (inferred); vitamin transmembrane transporter activity (inferred); INVOLVED IN thiamine transmembrane transport (ortholog); thiamine transport (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); chronic kidney disease (ortholog); Deafness (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

thiamine transporter 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	29,094,341 - 29,114,319 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	29,094,101 - 29,113,249 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,625,929 - 28,645,880 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,896,300 - 28,916,259 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,896,045 - 28,914,377 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,744,718 - 28,764,672 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,780,311 - 28,800,248 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	29,017,158 - 29,037,096 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

chronic kidney disease (ISO)

Deafness (ISO)

diabetes mellitus (ISO)

Experimental Liver Cirrhosis (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

megaloblastic anemia (ISO)

parathyroid carcinoma (ISO)

thiamine-responsive megaloblastic anemia syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

pyridoxine transport (IEA)

spermatogenesis (IEA)

thiamine diphosphate biosynthetic process (IEA)

thiamine transmembrane transport (IEA,ISO)

thiamine transport (IEA,ISO)

transmembrane transport (IEA)

vitamin transmembrane transport (IEA)

vitamin transport (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

thiamine transmembrane transporter activity (IEA)

vitamin transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

thiamine metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC19A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	29,094,341 - 29,114,319 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	29,094,101 - 29,113,249 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,625,929 - 28,645,880 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,896,300 - 28,916,259 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,896,045 - 28,914,377 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,744,718 - 28,764,672 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,780,311 - 28,800,248 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	29,017,158 - 29,037,096 (+)	NCBI		UU_Cfam_GSD_1.0

SLC19A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	169,463,909 - 169,485,970 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	169,463,909 - 169,485,944 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	169,433,147 - 169,455,208 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	167,699,791 - 167,721,865 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	166,164,825 - 166,186,899	NCBI
Celera	1	142,542,928 - 142,564,985 (-)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	140,656,190 - 140,678,233 (-)	NCBI		HuRef
CHM1_1	1	170,855,181 - 170,877,241 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	168,819,254 - 168,841,316 (-)	NCBI		T2T-CHM13v2.0

Slc19a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	164,076,615 - 164,092,954 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	164,076,615 - 164,092,954 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	164,249,046 - 164,265,385 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	164,249,046 - 164,265,385 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	166,179,186 - 166,195,500 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	166,085,730 - 166,102,044 (+)	NCBI		MGSCv36	mm8
Celera	1	166,660,848 - 166,702,585 (+)	NCBI		Celera
Cytogenetic Map	1	H2.2	NCBI
cM Map	1	71.56	NCBI

Slc19a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	79,135,118 - 79,149,316 (+)	NCBI		GRCr8
mRatBN7.2	13	76,601,975 - 76,616,175 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,601,900 - 76,616,172 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	79,220,427 - 79,234,615 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,524,434 - 80,538,620 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,779,112 - 77,793,296 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,552,586 - 82,566,586 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,552,550 - 82,566,586 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	87,436,626 - 87,450,479 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	80,017,780 - 80,031,777 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	80,031,967 - 80,045,928 (+)	NCBI
Celera	13	76,335,951 - 76,350,141 (+)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

Slc19a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	7,786,913 - 7,805,792 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	7,786,920 - 7,804,828 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC19A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	80,283,266 - 80,305,302 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	79,951,685 - 79,973,705 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	144,946,248 - 144,968,736 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	148,668,687 - 148,690,713 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	148,668,687 - 148,690,713 (-)	Ensembl	panpan1.1		panPan2

Slc19a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	99,350,348 - 99,381,143 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	17,197,095 - 17,227,891 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	17,197,133 - 17,225,435 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC19A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	81,510,098 - 81,536,464 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	81,510,221 - 81,535,099 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	89,134,887 - 89,159,766 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC19A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	59,568,801 - 59,587,398 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	59,568,893 - 59,585,094 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	61,243,780 - 61,261,916 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc19a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	7,380,827 - 7,400,665 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	7,382,158 - 7,400,702 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLC19A2
184 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			11	6		6	6		5
Low	5	5	11		6			6	7	8	10	6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014115207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038481248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038542602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038606759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038671431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000024176 ⟹ ENSCAFP00000022443

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	29,094,101 - 29,113,249 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000074982 ⟹ ENSCAFP00000050765

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	29,094,356 - 29,113,249 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845004281 ⟹ ENSCAFP00845003416

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	28,896,045 - 28,914,377 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845004294 ⟹ ENSCAFP00845003425

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	28,896,300 - 28,914,377 (+)	Ensembl

RefSeq Acc Id:

XM_014115207 ⟹ XP_013970682

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	29,094,341 - 29,114,319 (+)	NCBI
Dog10K_Boxer_Tasha	7	28,625,929 - 28,645,880 (+)	NCBI

Sequence:

show sequence

CCCTCCCTCCCGCGAATGGATGTGCCCGGCCCGGCGTCCCGGCGGGCGGCGGCGGCGGCGGCCA
CGATGCTCCTGCGCACGGCCCGCGTGCCCCGCGAGTGCTGGTTCTTGCCCACCGCGCTGCTGTG
CGCCTACGGCTTCTTCGCCAGCCTCCGGCCGTCCGAGCCCTTCCTGACGCCCTACCTGCTGGGG
CCGGACAAGAACCTGACGGAGCGGCAGGTCTTCAACGAAATTTATCCAGTATGGACTTACTCTT
ACTTGGTGCTGCTGTTTCCTGTGTTCCTAGCCACAGACTACCTCCGTTATAAGCCTGTTGTTCT
GCTGCAGGGACTCAGCCTTATTGTTACATGGTTCATGCTGCTTTACGCCCAGGGACTCCTGGCC
ATTCAGTTCTTGGAATTCTTTTATGGCATTGCCACAGCCACTGAAATTGCCTATTATTCTTATA
TCTACAGTGTGGTAGACCTGAACATGTACCAGAAAGTCACAAGTTACTGTCGGAGTGCCACCTT
GGTGGGCTTTACTGTGGGCTCTGTCCTGGGGCAAATCCTCTTCTCAGTGGCAGGCTGGTCCCTG
TTTAGTCTGAATGTCATCTCTCTTACGTGTGTTTCCGTGGCTTTTGCTGTGGCCTGGTTTCTTC
CTATGCCACAGAAGAGCCTTTTCTTTCACCATGTTCCTTCCACTTGCCAGAGAATGAATGGCAT
CAAGGCACAAAATGGCGGGATTATAACCAACACCTCAGCTTCTAACCACCTTCCTGGGTGGGAG
GATGTTGAGTCAAAAATCCCTCTAAATATGGAGGAGCCGGAACCCAAGCCAGACCGTCTCCTTG
TCCTGAAGATACTGTGGAGTGACTTTCTGATGTGCTACTCGTCTCGCCCTCTGCTCTGCTGGTC
TGTGTGGTGGGCCCTCTCCACCTGTGGCTACTTCCAAGTGGTGAACTACACACAGGGCCTGTGG
GAGAAGGTGATGCCCTCTCGCAACGCCACTATCTACAATGGCGGTGTGGAGGCCGTGTCCACCC
TCCTGGGTGCTGTTGCTGTGTTTGCAGTTGGTTATGTAAAAATATCCTGGTCAACATGGGGGGA
GATGACCCTGTCTCTGTTCTCTCTGCTGATTGCTTCCTCAGTGTATATTATGGATACTGTGAGG
AACATCTGGGTGTGCTACACATCCTATATCATCTTCAGAATCATCTACATGTTACTCATCACTA
TAGCAACTTTTCAGATTGCTGCTAACCTCAGCATGGAGCGCTACGCCCTAGTGTTTGGTGTGAA
TACCTTCATTGCTCTGGCCCTTCAGACTCTGCTCACCCTTATTGTGGTGGATGCCAGTGGCCTT
GGCTTAGAAATTACCACTCAGTTCCTGATCTACGCCAGTTATTTTGCACTCATCGCTGTGGTTT
TCCTGGCTAATGGTACAGCCAGTATTATGAAGAAATATAGAAAGCAAGAAGATGCAGAATCAAG
TTCTCATGTAACCACTTCATGATACACTGCTGAGAAATTGCTGCTTAAAGCAAAAACTCTGCAC
AGCAACTGTGCCCGGATGTATTTAAATTTTTAATATGTAGATGTATATTAATGTGCTTTTTAAG
GCTTCAAAGCAGCCAACTGATTATACCTTGTGTTCCCAGAGTAACAATACTGTTTAGAGGAGCC
AGAGGTGAGGTTTATCTTGTGGATTATTTATAAAAGCTAATTTAAACATTATTTTCTTCTGACT
CAAAAGTGAACTTGATTTTGAAAAGCACTAATGAAACACATGGCATTTAGATTTGATAGCAAGT
GAGTTTGGTGTTTCATCAGTCAGTTTACTTCTCTGTATCTGGTCAGCCAGAGGCGTGGCCCAGT
GGGACCAGGGCTTCACAGGGGCCATGGGACTTCACAGGTCAGAGTAGAAGTATGTTCTCACAGC
ACCTGTGTTCACCTTAATCCTTATTTCTGTAATACTCATGTGCATTTGTGTTGTGTTTCTGCAG
AGGAAAGCTGTTCTTATCACTGGCAATACTTGCTCTGGTTTGGTGTTCTCACATATTAGGAATG
TGTGTCATTTCTAATTTTATGTTATTTTAAAAAAATTCATTATATTAATGTTCTGTTTCCATCT
TGACAATTTTGTATTTGTGTAGATTGTCTTTAGGAATATACTTTTGCATTATTCATATGCTTCC
CAGAGAAGCTCATTTAGTTAGAAAATAAGGCAAGTTTTGAGGCCTGCTAATAATCTAAAGAGAC
CTAATCAGAAAACTTAAGGTATGTTTGCCTGTCTTTTAGTCTTCAATCTGAAGAATTATTAATT
CTATAATGAGAAGTTAATATATGGGCTAAAGATACAACTACTCCATTTTGTATTTGGATTCCCT
TTTATTTCCAAAATAAAATGAAAAGTCCTTTCTTTTTTTTAAATATCTTCATCCCTATTTATAC
CTTTTATATTATTTTTCCTTCTTATCTAAGATACAGATGTCATTAGGAGCTGAATTTGTTGGAT
TATTATAAGGCCTTTTCACAAACTGAGCCTCTTTTTAATTATTTCAATAGGACAGGAACTAGCA
TAGACTTGATTCCTGCATTTTGTACATTAAATCTGCCTTTGTTTCTAAGGGTGGATCATCTCGG
ATTATCTGCTTAAAATAATAATTGCTGGTGATTTCACTTCCAGGGTACTTGGAAAATGTTATTA
GGTACGTATCTAATTCTGTAATTAATCTACCACGTGGCTGCTAGTGTATGTGAGACACGAAAAC
CATTTTAAAGCCGACTTTGTTGCCTTATTTTGAAAAAAATCTAGGTTAATTTATTTAGAATAAC
ACAGGTAAACAGTGTGAATAATAATATCAAGGTTCCAAAGTTGACATACTCATTTAGTGTAAGT
GGGAATTCTAGAAATAAATGAACATAAATATAGGCCATTTTCCATTCACCTTCCTTTCTGATCA
AGAGCAAGAGCAGAGCACTAAGCGAAGGAGAAGTGATGTCATAAAAGGACAGCCTCCAATTTTA
TATTGTATCCTATTTTGCTATGTAGGGAATTGTTTATTCAGAAACAGGTTGAAAAGTGGTGTTC
GAGGGATTTTATTTAATGTATTTTAACAAAATGGACTGCAGTACAATCAAATCATTTATGTTAC
CAAAGCAACATTTCCATGGAATTTAATTCAAAGTTTGTGGTACACAACTGGAGCCTTTACTTAT
TTAAGACAATAATAAGTTTATCCTGGTGTGTGGCCATATTTCTAGAAGGCTGAGCCCAATTTGC
AAGTTGTACTGTATGCAATTTTGCAAAGAAGTGAAAATAATTTGTTGTACTTTTTATTCAATTC
TGTATACATTATGAAATTATTTTTATTAAATAAATATTTTACATTATA

hide sequence

RefSeq Acc Id:

XM_038481248 ⟹ XP_038337176

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	7	28,744,718 - 28,764,672 (+)	NCBI

RefSeq Acc Id:

XM_038542602 ⟹ XP_038398530

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	29,017,158 - 29,037,096 (+)	NCBI

RefSeq Acc Id:

XM_038606759 ⟹ XP_038462687

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	28,780,311 - 28,800,248 (+)	NCBI

RefSeq Acc Id:

XM_038671431 ⟹ XP_038527359

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	28,896,300 - 28,916,259 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013970682	(Get FASTA)	NCBI Sequence Viewer
	XP_038337176	(Get FASTA)	NCBI Sequence Viewer
	XP_038398530	(Get FASTA)	NCBI Sequence Viewer
	XP_038462687	(Get FASTA)	NCBI Sequence Viewer
	XP_038527359	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000022443.3
	ENSCAFP00000050765.1
	ENSCAFP00030038966.1
	ENSCAFP00030038977.1
	ENSCAFP00040001652.1
	ENSCAFP00040001666.1
	ENSCAFP00845003416
	ENSCAFP00845003416.1
	ENSCAFP00845003425.1

RefSeq Acc Id:

XP_013970682 ⟸ XM_014115207

- UniProtKB:

A0A8C0RSH3 (UniProtKB/TrEMBL), A0A8I3MT32 (UniProtKB/TrEMBL), A0A8C0R646 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDVPGPASRRAAAAAATMLLRTARVPRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNL
TERQVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLE
FFYGIATATEIAYYSYIYSVVDLNMYQKVTSYCRSATLVGFTVGSVLGQILFSVAGWSLFSLNV
ISLTCVSVAFAVAWFLPMPQKSLFFHHVPSTCQRMNGIKAQNGGIITNTSASNHLPGWEDVESK
IPLNMEEPEPKPDRLLVLKILWSDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVMP
SRNATIYNGGVEAVSTLLGAVAVFAVGYVKISWSTWGEMTLSLFSLLIASSVYIMDTVRNIWVC
YTSYIIFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEIT
TQFLIYASYFALIAVVFLANGTASIMKKYRKQEDAESSSHVTTS

hide sequence

RefSeq Acc Id:

ENSCAFP00000050765 ⟸ ENSCAFT00000074982

RefSeq Acc Id:

ENSCAFP00000022443 ⟸ ENSCAFT00000024176

RefSeq Acc Id:

XP_038337176 ⟸ XM_038481248

RefSeq Acc Id:

XP_038462687 ⟸ XM_038606759

RefSeq Acc Id:	XP_038527359 ⟸ XM_038671431
- UniProtKB:	A0A8C0RSH3 (UniProtKB/TrEMBL), A0A8I3MT32 (UniProtKB/TrEMBL), A0A8C0R646 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038398530 ⟸ XM_038542602
- UniProtKB:	A0A8C0R646 (UniProtKB/TrEMBL), A0A8C0RSH3 (UniProtKB/TrEMBL), A0A8I3MT32 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845003416 ⟸ ENSCAFT00845004281

RefSeq Acc Id:

ENSCAFP00845003425 ⟸ ENSCAFT00845004294

Promoters

RGD ID:

13683954

Promoter ID:

EPDNEW_C2021

Type:

initiation region

Name:

SLC19A2_1

Description:

solute carrier family 19 member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	29,094,186 - 29,094,246	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000015235	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030024220	UniProtKB/TrEMBL
	ENSCAFG00040001037	UniProtKB/TrEMBL
	ENSCAFG00845002427	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000024176.5	UniProtKB/TrEMBL
	ENSCAFT00000074982.2	UniProtKB/TrEMBL
	ENSCAFT00030044639.1	UniProtKB/TrEMBL
	ENSCAFT00030044650.1	UniProtKB/TrEMBL
	ENSCAFT00040001937.1	UniProtKB/TrEMBL
	ENSCAFT00040001951.1	UniProtKB/TrEMBL
	ENSCAFT00845004281	ENTREZGENE
	ENSCAFT00845004281.1	UniProtKB/TrEMBL
	ENSCAFT00845004294.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	Folate_carrier	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
	ThTr-1	UniProtKB/TrEMBL
KEGG Report	cfa:490353	UniProtKB/TrEMBL
NCBI Gene	SLC19A2	ENTREZGENE
PANTHER	PTHR10686	UniProtKB/TrEMBL
	THIAMINE TRANSPORTER 1	UniProtKB/TrEMBL
Pfam	Folate_carrier	UniProtKB/TrEMBL
PIRSF	Folate_carrier	UniProtKB/TrEMBL
	Thiamine_transporter_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/TrEMBL
UniProt	A0A8C0PPS1_CANLF	UniProtKB/TrEMBL
	A0A8C0R646	ENTREZGENE
	A0A8C0RSH3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MPK7_CANLF	UniProtKB/TrEMBL
	A0A8I3MT32	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46260	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB