HDAC4 (histone deacetylase 4) - Rat Genome Database

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Pathways
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Gene: HDAC4 (histone deacetylase 4) Canis lupus familiaris
Analyze
Symbol: HDAC4
Name: histone deacetylase 4
RGD ID: 12106732
Description: ENCODES a protein that exhibits histone binding (ortholog); histone deacetylase binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); aortic aneurysm (ortholog); FOUND IN A band (ortholog); chromatin (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,318,621 - 49,545,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,317,349 - 49,453,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,706,181 - 49,977,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell population proliferation  (IEA,ISO)
cellular response to mechanical stimulus  (ISO)
cellular response to parathyroid hormone stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
chromatin organization  (IEA)
chromatin remodeling  (IEA)
negative regulation of cell population proliferation  (IEA,ISO)
negative regulation of DNA-templated transcription  (IEA,ISO)
negative regulation of gene expression, epigenetic  (ISO)
negative regulation of glycolytic process  (IEA)
negative regulation of miRNA transcription  (IEA)
negative regulation of myotube differentiation  (ISO)
negative regulation of osteoblast differentiation  (IEA,ISO)
negative regulation of transcription by competitive promoter binding  (ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
osteoblast development  (IEA,ISO)
osteoblast differentiation  (IEA,ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of lamellipodium assembly  (ISO)
positive regulation of male mating behavior  (ISO)
positive regulation of neuron apoptotic process  (ISO)
positive regulation of protein sumoylation  (ISO)
positive regulation of reactive oxygen species biosynthetic process  (ISO)
positive regulation of smooth muscle cell migration  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA)
regulation of biosynthetic process  (IEA)
regulation of cardiac muscle contraction by calcium ion signaling  (IEA,ISO)
regulation of skeletal muscle fiber development  (IEA,ISO)
regulation of skeletal muscle fiber differentiation  (IEA,ISO)
response to alcohol  (ISO)
response to denervation involved in regulation of muscle adaptation  (IEA)
response to interleukin-1  (ISO)
response to xenobiotic stimulus  (ISO)
skeletal system development  (IEA,ISO)
type I interferon-mediated signaling pathway  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HDAC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,318,621 - 49,545,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,317,349 - 49,453,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,706,181 - 49,977,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBIUU_Cfam_GSD_1.0
HDAC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,048,168 - 239,401,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,048,168 - 239,401,654 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,969,864 - 240,323,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,634,801 - 239,987,580 (-)NCBINCBI36Build 36hg18NCBI36
Build 342239,706,635 - 240,058,897NCBI
Celera2233,665,663 - 234,017,808 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2231,741,321 - 232,092,211 (-)NCBIHuRef
CHM1_12239,975,706 - 240,328,679 (-)NCBICHM1_1
T2T-CHM13v2.02239,539,541 - 239,892,233 (-)NCBIT2T-CHM13v2.0
Hdac4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,856,501 - 92,123,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,856,501 - 92,123,421 (-)EnsemblGRCm39 Ensembl
GRCm38191,928,779 - 92,195,702 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,928,779 - 92,195,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,829,311 - 94,044,970 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,763,140 - 93,978,799 (-)NCBIMGSCv36mm8
Celera194,870,648 - 95,086,759 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.24NCBI
Hdac4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,950,972 - 100,200,994 (-)NCBIGRCr8
mRatBN7.2992,503,467 - 92,750,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,507,611 - 92,750,164 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,941,905 - 101,184,435 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,077,667 - 106,320,195 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,435,308 - 104,677,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,052,945 - 99,299,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,057,089 - 99,299,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,727,262 - 98,973,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,147,435 - 91,389,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1991,421,635 - 91,447,796 (+)NCBI
Celera990,047,090 - 90,289,214 (-)NCBICelera
Cytogenetic Map9q36NCBI
Hdac4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,629,691 - 1,886,210 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555421,629,691 - 1,886,160 (+)NCBIChiLan1.0ChiLan1.0
HDAC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213141,692,632 - 142,055,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B141,707,597 - 142,070,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B126,287,745 - 126,649,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B245,123,061 - 245,428,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B245,123,061 - 245,427,054 (-)Ensemblpanpan1.1panPan2
Hdac4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,277,349 - 191,488,700 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367451,730,694 - 1,942,074 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367451,730,743 - 1,942,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15138,381,635 - 138,614,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115138,378,237 - 138,657,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,920,983 - 153,035,106 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110125,098,375 - 125,450,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10125,098,366 - 125,403,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604073,947,227 - 74,329,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,845,858 - 4,101,487 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,846,196 - 4,101,537 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HDAC4
6436 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 3 6 2 12 10 3
Low 1 5 6 6 3 6 4 8 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022410009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000019989   ⟹   ENSCAFP00000018541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2549,317,349 - 49,453,478 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053735   ⟹   ENSCAFP00845042225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2549,706,181 - 49,977,414 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053756   ⟹   ENSCAFP00845042244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2549,706,181 - 49,945,423 (-)Ensembl
RefSeq Acc Id: XM_038435957   ⟹   XP_038291885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,827,299 (-)NCBI
RefSeq Acc Id: XM_038435958   ⟹   XP_038291886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,827,299 (-)NCBI
RefSeq Acc Id: XM_038435959   ⟹   XP_038291887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,827,299 (-)NCBI
RefSeq Acc Id: XM_038435960   ⟹   XP_038291888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBI
RefSeq Acc Id: XM_038435961   ⟹   XP_038291889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBI
RefSeq Acc Id: XM_038435962   ⟹   XP_038291890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,936,227 (-)NCBI
RefSeq Acc Id: XM_038435963   ⟹   XP_038291891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,906,218 (-)NCBI
RefSeq Acc Id: XM_038435964   ⟹   XP_038291892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02549,702,537 - 49,826,348 (-)NCBI
RefSeq Acc Id: XM_038458196   ⟹   XP_038314124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 49,934,986 (-)NCBI
RefSeq Acc Id: XM_038458197   ⟹   XP_038314125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 49,934,986 (-)NCBI
RefSeq Acc Id: XM_038458198   ⟹   XP_038314126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 49,934,986 (-)NCBI
RefSeq Acc Id: XM_038458199   ⟹   XP_038314127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBI
RefSeq Acc Id: XM_038458200   ⟹   XP_038314128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBI
RefSeq Acc Id: XM_038458201   ⟹   XP_038314129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 50,043,645 (-)NCBI
RefSeq Acc Id: XM_038458202   ⟹   XP_038314130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 50,013,785 (-)NCBI
RefSeq Acc Id: XM_038458203   ⟹   XP_038314131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2549,810,705 - 49,934,036 (-)NCBI
RefSeq Acc Id: XM_038510879   ⟹   XP_038366807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,699,435 (-)NCBI
RefSeq Acc Id: XM_038510880   ⟹   XP_038366808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,699,435 (-)NCBI
RefSeq Acc Id: XM_038510881   ⟹   XP_038366809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,699,435 (-)NCBI
RefSeq Acc Id: XM_038510882   ⟹   XP_038366810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBI
RefSeq Acc Id: XM_038510883   ⟹   XP_038366811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBI
RefSeq Acc Id: XM_038510884   ⟹   XP_038366812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,808,218 (-)NCBI
RefSeq Acc Id: XM_038510885   ⟹   XP_038366813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,778,347 (-)NCBI
RefSeq Acc Id: XM_038510886   ⟹   XP_038366814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12549,576,470 - 49,698,484 (-)NCBI
RefSeq Acc Id: XM_038574376   ⟹   XP_038430304
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,720,532 (-)NCBI
RefSeq Acc Id: XM_038574377   ⟹   XP_038430305
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,720,532 (-)NCBI
RefSeq Acc Id: XM_038574378   ⟹   XP_038430306
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,720,532 (-)NCBI
RefSeq Acc Id: XM_038574379   ⟹   XP_038430307
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBI
RefSeq Acc Id: XM_038574380   ⟹   XP_038430308
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBI
RefSeq Acc Id: XM_038574382   ⟹   XP_038430310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,829,531 (-)NCBI
RefSeq Acc Id: XM_038574383   ⟹   XP_038430311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,799,412 (-)NCBI
RefSeq Acc Id: XM_038574384   ⟹   XP_038430312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02549,597,454 - 49,719,581 (-)NCBI
RefSeq Acc Id: XM_038638611   ⟹   XP_038494539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,489,271 (-)NCBI
RefSeq Acc Id: XM_038638612   ⟹   XP_038494540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,489,271 (-)NCBI
RefSeq Acc Id: XM_038638613   ⟹   XP_038494541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,489,271 (-)NCBI
RefSeq Acc Id: XM_038638614   ⟹   XP_038494542
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBI
RefSeq Acc Id: XM_038638615   ⟹   XP_038494543
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBI
RefSeq Acc Id: XM_038638616   ⟹   XP_038494544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,598,065 (-)NCBI
RefSeq Acc Id: XM_038638617   ⟹   XP_038494545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,568,210 (-)NCBI
RefSeq Acc Id: XM_038638618   ⟹   XP_038494546
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02549,364,978 - 49,488,321 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038291885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038291892 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314130 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314131 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366809 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366810 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366812 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038366814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430304 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430305 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430306 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430307 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430308 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430311 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494539 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494540 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494541 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494542 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494543 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494544 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494545 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000018541.5
  ENSCAFP00000067674.1
  ENSCAFP00030024388.1
  ENSCAFP00040035095.1
  ENSCAFP00845042225
  ENSCAFP00845042225.1
  ENSCAFP00845042244
  ENSCAFP00845042244.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000018541   ⟸   ENSCAFT00000019989
RefSeq Acc Id: XP_038366811   ⟸   XM_038510883
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038366810   ⟸   XM_038510882
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038366812   ⟸   XM_038510884
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038366813   ⟸   XM_038510885
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038366808   ⟸   XM_038510880
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038366809   ⟸   XM_038510881
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038366807   ⟸   XM_038510879
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038366814   ⟸   XM_038510886
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038494543   ⟸   XM_038638615
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038494542   ⟸   XM_038638614
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038494544   ⟸   XM_038638616
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038494545   ⟸   XM_038638617
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038494540   ⟸   XM_038638612
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494541   ⟸   XM_038638613
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038494539   ⟸   XM_038638611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038494546   ⟸   XM_038638618
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038291889   ⟸   XM_038435961
- Peptide Label: isoform X5
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291888   ⟸   XM_038435960
- Peptide Label: isoform X4
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291890   ⟸   XM_038435962
- Peptide Label: isoform X6
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291891   ⟸   XM_038435963
- Peptide Label: isoform X7
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291886   ⟸   XM_038435958
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291887   ⟸   XM_038435959
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291885   ⟸   XM_038435957
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291892   ⟸   XM_038435964
- Peptide Label: isoform X8
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314128   ⟸   XM_038458200
- Peptide Label: isoform X5
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314127   ⟸   XM_038458199
- Peptide Label: isoform X4
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314129   ⟸   XM_038458201
- Peptide Label: isoform X6
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314130   ⟸   XM_038458202
- Peptide Label: isoform X7
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314125   ⟸   XM_038458197
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314126   ⟸   XM_038458198
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314124   ⟸   XM_038458196
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314131   ⟸   XM_038458203
- Peptide Label: isoform X8
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430308   ⟸   XM_038574380
- Peptide Label: isoform X5
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430307   ⟸   XM_038574379
- Peptide Label: isoform X4
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430310   ⟸   XM_038574382
- Peptide Label: isoform X6
- UniProtKB: A0A8I3Q401 (UniProtKB/TrEMBL),   A0A8P0TJ56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430311   ⟸   XM_038574383
- Peptide Label: isoform X7
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430305   ⟸   XM_038574377
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430306   ⟸   XM_038574378
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430304   ⟸   XM_038574376
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430312   ⟸   XM_038574384
- Peptide Label: isoform X8
- UniProtKB: A0A8C0TIE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042244   ⟸   ENSCAFT00845053756
RefSeq Acc Id: ENSCAFP00845042225   ⟸   ENSCAFT00845053735
Protein Domains
Histone deacetylase   Histone deacetylase glutamine rich N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012546 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015026 UniProtKB/TrEMBL
  ENSCAFG00040021652 UniProtKB/TrEMBL
  ENSCAFG00845030282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019989.5 UniProtKB/TrEMBL
  ENSCAFT00000103377.1 UniProtKB/TrEMBL
  ENSCAFT00030027942.1 UniProtKB/TrEMBL
  ENSCAFT00040040213.1 UniProtKB/TrEMBL
  ENSCAFT00845053735 ENTREZGENE
  ENSCAFT00845053735.1 UniProtKB/TrEMBL
  ENSCAFT00845053756 ENTREZGENE
  ENSCAFT00845053756.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
  6.10.250.1550 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/TrEMBL
NCBI Gene HDAC4 ENTREZGENE
PANTHER HISTONE DEACETYLASE UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A8C0TIE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q401 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QMU0_CANLF UniProtKB/TrEMBL
  A0A8P0SHF8_CANLF UniProtKB/TrEMBL
  A0A8P0TJ56 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:50629 ENTREZGENE