CLCN5 (chloride voltage-gated channel 5) - Rat Genome Database

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Gene: CLCN5 (chloride voltage-gated channel 5) Canis lupus familiaris
Analyze
Symbol: CLCN5
Name: chloride voltage-gated channel 5
RGD ID: 12085580
Description: ENCODES a protein that exhibits voltage-gated chloride channel activity (ortholog); INVOLVED IN chloride transport (ortholog); endocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bethlem Myopathy 1A (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease); H(+)/Cl(-) exchange transporter 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,705,789 - 42,860,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,846,266 - 42,993,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CLCN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,705,789 - 42,860,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,846,266 - 42,993,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBIUU_Cfam_GSD_1.0
CLCN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,922,596 - 50,099,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,922,596 - 50,099,235 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,687,206 - 49,863,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,718,955 - 49,750,632 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X49,537,191 - 49,560,557NCBI
CeleraX53,756,528 - 53,932,992 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX47,156,646 - 47,337,277 (+)NCBIHuRef
CHM1_1X49,766,989 - 49,943,526 (+)NCBICHM1_1
T2T-CHM13v2.0X49,238,534 - 49,416,892 (+)NCBIT2T-CHM13v2.0
Clcn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,020,049 - 7,185,597 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,020,049 - 7,185,597 (-)EnsemblGRCm39 Ensembl
GRCm38X7,153,810 - 7,319,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,153,810 - 7,319,358 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,735,945 - 6,765,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,316,432 - 6,345,645 (-)NCBIMGSCv36mm8
CeleraX4,285,826 - 4,305,500 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.21NCBI
Clcn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,857,260 - 18,011,844 (+)NCBIGRCr8
mRatBN7.2X15,185,380 - 15,339,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,185,451 - 15,334,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX20,124,321 - 20,150,472 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X19,932,829 - 19,958,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,197,788 - 16,223,939 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X16,170,585 - 16,196,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX16,050,780 - 16,196,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,955,709 - 16,981,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X27,383,769 - 27,409,877 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X27,437,237 - 27,463,346 (+)NCBI
CeleraX15,387,005 - 15,413,019 (+)NCBICelera
RH 3.4 MapX169.21RGD
Cytogenetic MapXq12NCBI
Clcn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555431,077,007 - 1,250,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBIChiLan1.0ChiLan1.0
CLCN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X51,350,269 - 51,512,532 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X51,353,651 - 51,515,909 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X42,137,523 - 42,299,716 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,851,472 - 50,013,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,854,165 - 50,006,363 (+)Ensemblpanpan1.1panPan2
Clcn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X35,203,152 - 35,361,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,445,779 - 1,596,814 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,552,312 - 1,602,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,613,628 - 43,811,526 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,779,016 - 43,809,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,706,075 - 48,736,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLCN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,772,176 - 46,934,886 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,772,305 - 46,927,861 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666086358,698 - 521,112 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clcn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248931,390,344 - 1,577,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248931,390,417 - 1,581,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLCN5
490 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 1
Low 5 17 2 6 2 6 11 8 10 5
Below cutoff 5 4 4 4 6 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003435518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_549002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000025340   ⟹   ENSCAFP00000023526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074328   ⟹   ENSCAFP00000061896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,766,945 - 42,853,812 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000076094   ⟹   ENSCAFP00000049154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045719   ⟹   ENSCAFP00845035880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX42,846,266 - 42,993,780 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045897   ⟹   ENSCAFP00845036033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX42,846,266 - 42,993,780 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046057   ⟹   ENSCAFP00845036163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX42,897,361 - 42,993,780 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046229   ⟹   ENSCAFP00845036303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX42,970,053 - 42,993,780 (+)Ensembl
RefSeq Acc Id: XM_003435518   ⟹   XP_003435566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,830,923 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,208,212 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022415638   ⟹   XP_022271346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,705,789 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022415639   ⟹   XP_022271347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,705,789 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022415640   ⟹   XP_022271348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,705,789 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022415641   ⟹   XP_022271349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,705,789 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022415642   ⟹   XP_022271350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,705,789 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,082,898 - 17,238,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038450012   ⟹   XP_038305940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450013   ⟹   XP_038305941
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450014   ⟹   XP_038305942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450015   ⟹   XP_038305943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450016   ⟹   XP_038305944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,846,347 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450017   ⟹   XP_038305945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,907,936 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038450018   ⟹   XP_038305946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,969,972 - 42,999,814 (+)NCBI
RefSeq Acc Id: XM_038523469   ⟹   XP_038379397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523470   ⟹   XP_038379398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523471   ⟹   XP_038379399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523472   ⟹   XP_038379400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523473   ⟹   XP_038379401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,830,221 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523474   ⟹   XP_038379402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,892,123 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038523475   ⟹   XP_038379403
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,955,866 - 42,985,707 (+)NCBI
RefSeq Acc Id: XM_038587444   ⟹   XP_038443372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587445   ⟹   XP_038443373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587446   ⟹   XP_038443374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587447   ⟹   XP_038443375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587448   ⟹   XP_038443376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,912,678 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587449   ⟹   XP_038443377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,974,246 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038587450   ⟹   XP_038443378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X43,038,004 - 43,067,849 (+)NCBI
RefSeq Acc Id: XM_038651950   ⟹   XP_038507878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651951   ⟹   XP_038507879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651952   ⟹   XP_038507880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651953   ⟹   XP_038507881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651954   ⟹   XP_038507882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,817,844 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651955   ⟹   XP_038507883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,879,379 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_038651956   ⟹   XP_038507884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,943,143 - 42,972,995 (+)NCBI
RefSeq Acc Id: XM_549002   ⟹   XP_549002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,767,115 - 42,860,701 (+)NCBI
Dog10K_Boxer_TashaX17,144,464 - 17,238,055 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003435566 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271346 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271347 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271348 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271349 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305940 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305941 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305946 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038379403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443372 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443377 (Get FASTA)   NCBI Sequence Viewer  
  XP_038443378 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507884 (Get FASTA)   NCBI Sequence Viewer  
  XP_549002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023526.3
  ENSCAFP00000049154.1
  ENSCAFP00000061896.2
  ENSCAFP00000068646.1
  ENSCAFP00030020209.1
  ENSCAFP00040021536.1
  ENSCAFP00040021627.1
  ENSCAFP00040021721.1
  ENSCAFP00845035880
  ENSCAFP00845035880.1
  ENSCAFP00845036033
  ENSCAFP00845036033.1
  ENSCAFP00845036163
  ENSCAFP00845036163.1
  ENSCAFP00845036303
  ENSCAFP00845036303.1
RefSeq Acc Id: XP_549002   ⟸   XM_549002
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003435566   ⟸   XM_003435518
- Peptide Label: isoform X5
- UniProtKB: A0A8I3PXT2 (UniProtKB/TrEMBL),   A0A8P0TDI8 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271346   ⟸   XM_022415638
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SIT8 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271349   ⟸   XM_022415641
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271347   ⟸   XM_022415639
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SJV7 (UniProtKB/TrEMBL),   A0A8I3PW89 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271350   ⟸   XM_022415642
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271348   ⟸   XM_022415640
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SJF0 (UniProtKB/TrEMBL),   A0A8I3S5P1 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000061896   ⟸   ENSCAFT00000074328
RefSeq Acc Id: ENSCAFP00000023526   ⟸   ENSCAFT00000025340
RefSeq Acc Id: ENSCAFP00000049154   ⟸   ENSCAFT00000076094
RefSeq Acc Id: XP_038379397   ⟸   XM_038523469
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038379400   ⟸   XM_038523472
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038379398   ⟸   XM_038523470
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038379401   ⟸   XM_038523473
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038379399   ⟸   XM_038523471
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038379402   ⟸   XM_038523474
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038379403   ⟸   XM_038523475
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038507878   ⟸   XM_038651950
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507881   ⟸   XM_038651953
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038507879   ⟸   XM_038651951
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507882   ⟸   XM_038651954
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038507880   ⟸   XM_038651952
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038507883   ⟸   XM_038651955
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038507884   ⟸   XM_038651956
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038305940   ⟸   XM_038450012
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SIT8 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305943   ⟸   XM_038450015
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305941   ⟸   XM_038450013
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SJV7 (UniProtKB/TrEMBL),   A0A8I3PW89 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305944   ⟸   XM_038450016
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305942   ⟸   XM_038450014
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SJF0 (UniProtKB/TrEMBL),   A0A8I3S5P1 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305945   ⟸   XM_038450017
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305946   ⟸   XM_038450018
- Peptide Label: isoform X5
- UniProtKB: A0A8I3PXT2 (UniProtKB/TrEMBL),   A0A8P0TDI8 (UniProtKB/TrEMBL),   A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443372   ⟸   XM_038587444
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL),   A0A8C0SIT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443375   ⟸   XM_038587447
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443373   ⟸   XM_038587445
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL),   A0A8C0SJV7 (UniProtKB/TrEMBL),   A0A8I3PW89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443376   ⟸   XM_038587448
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443374   ⟸   XM_038587446
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL),   A0A8C0SJF0 (UniProtKB/TrEMBL),   A0A8I3S5P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443377   ⟸   XM_038587449
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443378   ⟸   XM_038587450
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NBI6 (UniProtKB/TrEMBL),   A0A8I3PXT2 (UniProtKB/TrEMBL),   A0A8P0TDI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845036163   ⟸   ENSCAFT00845046057
RefSeq Acc Id: ENSCAFP00845036033   ⟸   ENSCAFT00845045897
RefSeq Acc Id: ENSCAFP00845035880   ⟸   ENSCAFT00845045719
RefSeq Acc Id: ENSCAFP00845036303   ⟸   ENSCAFT00845046229
Protein Domains
CBS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015971 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012511 UniProtKB/TrEMBL
  ENSCAFG00040013402 UniProtKB/TrEMBL
  ENSCAFG00845025898 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025340.5 UniProtKB/TrEMBL
  ENSCAFT00000074328.2 UniProtKB/TrEMBL
  ENSCAFT00000076094.2 UniProtKB/TrEMBL
  ENSCAFT00000097336.1 UniProtKB/TrEMBL
  ENSCAFT00030023170.1 UniProtKB/TrEMBL
  ENSCAFT00040024776.1 UniProtKB/TrEMBL
  ENSCAFT00040024877.1 UniProtKB/TrEMBL
  ENSCAFT00040024982.1 UniProtKB/TrEMBL
  ENSCAFT00845045719 ENTREZGENE
  ENSCAFT00845045719.1 UniProtKB/TrEMBL
  ENSCAFT00845045897 ENTREZGENE
  ENSCAFT00845045897.1 UniProtKB/TrEMBL
  ENSCAFT00845046057 ENTREZGENE
  ENSCAFT00845046057.1 UniProtKB/TrEMBL
  ENSCAFT00845046229 ENTREZGENE
  ENSCAFT00845046229.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.580.20 UniProtKB/TrEMBL
  3.90.1280.20 UniProtKB/TrEMBL
  Clc chloride channel UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/TrEMBL
  CBS_dom_sf UniProtKB/TrEMBL
  Cl-channel_core UniProtKB/TrEMBL
  Cl-channel_volt-gated UniProtKB/TrEMBL
  Cl_channel-5 UniProtKB/TrEMBL
KEGG Report cfa:491882 UniProtKB/TrEMBL
NCBI Gene CLCN5 ENTREZGENE
PANTHER CHLORIDE CHANNEL PROTEIN UniProtKB/TrEMBL
  H(+)/CL(-) EXCHANGE TRANSPORTER 5 UniProtKB/TrEMBL
Pfam CBS UniProtKB/TrEMBL
  Voltage_CLC UniProtKB/TrEMBL
PRINTS CLCHANNEL UniProtKB/TrEMBL
  CLCHANNEL5 UniProtKB/TrEMBL
PROSITE CBS UniProtKB/TrEMBL
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF54631 UniProtKB/TrEMBL
  SSF81340 UniProtKB/TrEMBL
UniProt A0A8C0NBI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SIT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SJF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SJV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PW89 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PXT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q8R4_CANLF UniProtKB/TrEMBL
  A0A8I3S5P1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TDI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TKM7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39305 ENTREZGENE