APOD (apolipoprotein D) - Rat Genome Database

Name: APOD
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: APOD (apolipoprotein D) Canis lupus familiaris

Analyze

Symbol:

APOD

Name:

apolipoprotein D

RGD ID:

12080808

Description:

ENCODES a protein that exhibits cholesterol binding (inferred); lipid binding (inferred); INVOLVED IN glucose metabolic process (ortholog); negative regulation of cytokine production involved in inflammatory response (ortholog); negative regulation of focal adhesion assembly (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Injuries (ortholog); genetic disease (ortholog); FOUND IN cytosolic ribosome (ortholog); dendrite (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	APOD (apolipoprotein D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Apod (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Apod (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Apod (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	APOD (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Apod (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	APOD (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	APOD (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Apod (apolipoprotein D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	30,490,149 - 30,504,804 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	30,488,135 - 30,509,289 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	30,513,383 - 30,531,252 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	30,739,971 - 30,756,943 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	30,737,959 - 30,803,155 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	30,534,404 - 30,551,475 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	30,570,143 - 30,588,341 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	31,191,636 - 31,209,901 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Brain Injuries (ISO)

genetic disease (ISO)

gestational diabetes (ISO)

high grade glioma (ISO)

Hypokinesia (ISO)

learning disability (ISO)

neurodegenerative disease (ISO)

obesity (ISO)

status epilepticus (ISO)

Stroke (ISO)

type 2 diabetes mellitus (ISO)

vasculogenic impotence (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEA)

glucose metabolic process (ISO)

lipid metabolic process (IEA)

lipid transport (IEA)

negative regulation of cytokine production involved in inflammatory response (ISO)

negative regulation of focal adhesion assembly (ISO)

negative regulation of lipoprotein lipid oxidation (IEA)

negative regulation of monocyte chemotactic protein-1 production (ISO)

negative regulation of platelet-derived growth factor receptor signaling pathway (ISO)

negative regulation of protein import into nucleus (ISO)

negative regulation of smooth muscle cell proliferation (ISO)

negative regulation of smooth muscle cell-matrix adhesion (ISO)

negative regulation of T cell migration (ISO)

peripheral nervous system axon regeneration (ISO)

response to axon injury (ISO)

response to reactive oxygen species (IEA)

response to stress (IEA)

response to xenobiotic stimulus (ISO)

tissue regeneration (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosolic ribosome (ISO)

dendrite (ISO)

extracellular region (IEA)

extracellular space (ISO)

neuronal cell body (ISO)

perinuclear region of cytoplasm (ISO)

Molecular Function

cholesterol binding (IEA)

lipid binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

APOD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	30,490,149 - 30,504,804 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	30,488,135 - 30,509,289 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	30,513,383 - 30,531,252 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	30,739,971 - 30,756,943 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	30,737,959 - 30,803,155 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	30,534,404 - 30,551,475 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	30,570,143 - 30,588,341 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	31,191,636 - 31,209,901 (+)	NCBI		UU_Cfam_GSD_1.0

APOD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	195,568,705 - 195,583,940 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	195,568,705 - 195,584,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	195,295,576 - 195,310,811 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	196,776,865 - 196,792,278 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	193,705,274 - 193,720,781 (-)	NCBI		Celera
Cytogenetic Map	3	q29	NCBI
HuRef	3	192,666,066 - 192,681,572 (-)	NCBI		HuRef
CHM1_1	3	195,258,489 - 195,273,995 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	198,275,776 - 198,291,015 (-)	NCBI		T2T-CHM13v2.0

Apod
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	31,115,010 - 31,133,626 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	31,115,010 - 31,133,626 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	31,296,192 - 31,314,808 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	31,296,192 - 31,314,808 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	31,296,278 - 31,314,682 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	31,215,939 - 31,234,343 (-)	NCBI		MGSCv36	mm8
Celera	16	31,811,354 - 31,812,738 (-)	NCBI		Celera
Cytogenetic Map	16	B2	NCBI
cM Map	16	21.41	NCBI

Apod
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	82,936,216 - 82,957,264 (+)	NCBI		GRCr8
mRatBN7.2	11	69,431,261 - 69,452,306 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	69,431,260 - 69,452,305 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	78,268,259 - 78,289,302 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	70,921,321 - 70,942,415 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	69,957,346 - 69,978,387 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	72,705,204 - 72,726,263 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	72,705,129 - 72,726,301 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	75,781,496 - 75,804,020 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	68,851,395 - 68,872,467 (+)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

Apod
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	13,553,058 - 13,573,690 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	13,553,254 - 13,570,357 (+)	NCBI	ChiLan1.0	ChiLan1.0

APOD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	193,479,636 - 193,495,178 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	193,484,335 - 193,499,805 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	192,852,887 - 192,868,233 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	203,152,476 - 203,167,888 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	203,152,476 - 203,168,060 (-)	Ensembl	panpan1.1		panPan2

Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	143,660,676 - 143,676,991 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936833	259,660 - 277,246 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936833	260,798 - 277,060 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

APOD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	132,514,949 - 132,562,599 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	132,514,546 - 132,562,594 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	142,076,180 - 142,096,088 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

APOD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	89,612,210 - 89,624,038 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	89,612,040 - 89,624,012 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	63,376,402 - 63,388,926 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Apod
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	62,530,673 - 62,555,129 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	62,535,005 - 62,552,405 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in APOD
270 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	17	1	1	1	6	6	12		10	6
Low			5	5	5	5				8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014110289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038445338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038519580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038647631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000021217 ⟹ ENSCAFP00000019702

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	30,488,986 - 30,509,289 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000021221 ⟹ ENSCAFP00000019706

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	30,488,986 - 30,506,996 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000079273 ⟹ ENSCAFP00000048376

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	30,488,135 - 30,509,289 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054445 ⟹ ENSCAFP00845042791

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	30,737,959 - 30,803,155 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054453 ⟹ ENSCAFP00845042798

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	30,738,816 - 30,762,089 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054471 ⟹ ENSCAFP00845042815

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	30,738,816 - 30,759,818 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054480 ⟹ ENSCAFP00845042821

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	30,740,156 - 30,756,941 (+)	Ensembl

RefSeq Acc Id:

XM_014110289 ⟹ XP_013965764

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	33	30,490,149 - 30,504,804 (+)	NCBI
Dog10K_Boxer_Tasha	33	30,513,383 - 30,531,252 (+)	NCBI

Sequence:

show sequence

GAAGGAAATTGGGGGAGGGAGGGAGATGGACAAAACATCCCATCTTTGTGTTTGGTACAGAGCT
AAGCTTTTAGGCCAGCCTTCCTGAACTGGAGGGGGTGTGGCATGCATTAAAATTAAACATCAAT
GACCCCGCGAAGCTTATAAAAAAGCTTGGGAAAAGCCAGTCAACAAAAGAAGGCATCCTCATTT
GGATGAGTTTGCATGTGGAAACTGCCTTCATCTTGACAAAAAAGCCCAGGATGCTGACGGCGCT
GCTGCTGCTCCCCGCGCTGGCCGGCCTCCTCCCCGCCGCAGACGGACAGGCCTTCCACCTGGGG
AGATGCCCGACGCCGCCGGTGCAGGAGAACTTCGACGTGCACAAGTATCTTGGACGATGGTACG
AAATTGAGAAGATCCCAGTGAGCTTTGAGAAGGGAAGTTGCATCCAAGCCAACTATTCGCTAAT
GGAAAACGGAAACATCAAAGTGATAAACCAGGAGTTGAGATCTGATGGCACCGTGAATCAAATC
GAAGGCGAAGCCACCCAGGGCAACCTTACAGAGCCTGCCAAGCTGGGAGTTAAGTTTTTCTGGT
TGATGCCATCAGCTCCATACTGGGTCCTGGCCACCGACTACGAGAACTACGCCCTCGTGTACTC
CTGCACCACAATCGTCTGGCTTTTCCACATGGATCATGTTTGGATCTTGGGAAGAAACCCTTAT
CTCCCTCCAGAAACAGTGACCTATCTGAAAGATATCCTGACCTCTAATGACATTGACATCGAGA
AAATGACTATCACAGATCAGGTGAACTGCCCCGAGTCGCTGTGAGAGGCTCGAGGGGGAACCCG
CGTTCACTCCACGTTACTTCTTTTGCTTTGCTTCCCCCCCCTCCACCCCCCATAAAGACAGACC
GACCCCTGCAAACCGTTGCAAACACCAAAGGGAAATTGGGCAGCGGAAGCCCATGGAGAGAAAG
TCAAGGAAAGTTGGCCCAAACACTTAGCCATGCACCACCCTGTTACCCTGCCCGTCTAATAATA
AACTTGTTGCTGACCTGCTGTGCTCACAGTAGATTCTGAA

hide sequence

RefSeq Acc Id:

XM_038445338 ⟹ XP_038301266

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	33	30,739,971 - 30,756,943 (+)	NCBI

RefSeq Acc Id:

XM_038519580 ⟹ XP_038375508

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	33	30,534,404 - 30,551,475 (+)	NCBI

RefSeq Acc Id:

XM_038583223 ⟹ XP_038439151

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	33	31,191,636 - 31,209,901 (+)	NCBI

RefSeq Acc Id:

XM_038647631 ⟹ XP_038503559

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	33	30,570,143 - 30,588,341 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013965764	(Get FASTA)	NCBI Sequence Viewer
	XP_038301266	(Get FASTA)	NCBI Sequence Viewer
	XP_038375508	(Get FASTA)	NCBI Sequence Viewer
	XP_038439151	(Get FASTA)	NCBI Sequence Viewer
	XP_038503559	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000019702.4
	ENSCAFP00000019706.4
	ENSCAFP00000048376.2
	ENSCAFP00000069138.1
	ENSCAFP00030038237.1
	ENSCAFP00030038264.1
	ENSCAFP00845042791.1
	ENSCAFP00845042798.1
	ENSCAFP00845042815
	ENSCAFP00845042815.1
	ENSCAFP00845042821.1

RefSeq Acc Id:	XP_013965764 ⟸ XM_014110289
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JNN1 (UniProtKB/TrEMBL), A0A8C0PAS7 (UniProtKB/TrEMBL), A0A8I3Q4W1 (UniProtKB/TrEMBL), A0A8I3S7R2 (UniProtKB/TrEMBL), A0A8P0SHY2 (UniProtKB/TrEMBL), A0A8P0SID9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLHVETAFILTKKPRMLTALLLLPALAGLLPAADGQAFHLGRCPTPPVQENFDVHKYLGRWYE IEKIPVSFEKGSCIQANYSLMENGNIKVINQELRSDGTVNQIEGEATQGNLTEPAKLGVKFFWL MPSAPYWVLATDYENYALVYSCTTIVWLFHMDHVWILGRNPYLPPETVTYLKDILTSNDIDIEK MTITDQVNCPESL hide sequence

RefSeq Acc Id:

ENSCAFP00000019706 ⟸ ENSCAFT00000021221

RefSeq Acc Id:

ENSCAFP00000019702 ⟸ ENSCAFT00000021217

RefSeq Acc Id:

ENSCAFP00000048376 ⟸ ENSCAFT00000079273

RefSeq Acc Id:	XP_038375508 ⟸ XM_038519580
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038503559 ⟸ XM_038647631
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038301266 ⟸ XM_038445338
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JNN1 (UniProtKB/TrEMBL), A0A8C0PAS7 (UniProtKB/TrEMBL), A0A8I3Q4W1 (UniProtKB/TrEMBL), A0A8I3S7R2 (UniProtKB/TrEMBL), A0A8P0SHY2 (UniProtKB/TrEMBL), A0A8P0SID9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038439151 ⟸ XM_038583223
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JNN1 (UniProtKB/TrEMBL), A0A8C0PAS7 (UniProtKB/TrEMBL), A0A8I3Q4W1 (UniProtKB/TrEMBL), A0A8I3S7R2 (UniProtKB/TrEMBL), A0A8P0SHY2 (UniProtKB/TrEMBL), A0A8P0SID9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845042821 ⟸ ENSCAFT00845054480

RefSeq Acc Id:

ENSCAFP00845042791 ⟸ ENSCAFT00845054445

RefSeq Acc Id:

ENSCAFP00845042815 ⟸ ENSCAFT00845054471

RefSeq Acc Id:

ENSCAFP00845042798 ⟸ ENSCAFT00845054453

Protein Domains

Lipocalin/cytosolic fatty-acid binding

Promoters

RGD ID:

13688845

Promoter ID:

EPDNEW_C6913

Type:

single initiation site

Name:

APOD_1

Description:

apolipoprotein D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	33	30,490,321 - 30,490,381	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013368	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023814	UniProtKB/TrEMBL
	ENSCAFG00845030677	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000021217.5	UniProtKB/TrEMBL
	ENSCAFT00000021221.6	UniProtKB/TrEMBL
	ENSCAFT00000079273.2	UniProtKB/TrEMBL
	ENSCAFT00000103895.1	UniProtKB/TrEMBL
	ENSCAFT00030043805.1	UniProtKB/TrEMBL
	ENSCAFT00030043837.1	UniProtKB/TrEMBL
	ENSCAFT00845054445.1	UniProtKB/TrEMBL
	ENSCAFT00845054453.1	UniProtKB/TrEMBL
	ENSCAFT00845054471	ENTREZGENE
	ENSCAFT00845054471.1	UniProtKB/TrEMBL
	ENSCAFT00845054480.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.128.20	UniProtKB/TrEMBL
InterPro	ApoD_vertbrte	UniProtKB/TrEMBL
	ApolipopD	UniProtKB/TrEMBL
	Calycin	UniProtKB/TrEMBL
	Lipocalin_ApoD	UniProtKB/TrEMBL
	Lipocalin_CS	UniProtKB/TrEMBL
	Lipocln_cytosolic_FA-bd_dom	UniProtKB/TrEMBL
KEGG Report	cfa:478604	UniProtKB/TrEMBL
NCBI Gene	APOD	ENTREZGENE
PANTHER	APOLIPOPROTEIN D	UniProtKB/TrEMBL
	APOLIPOPROTEIN D	UniProtKB/TrEMBL
Pfam	Lipocalin	UniProtKB/TrEMBL
PIRSF	Lipocalin_ApoD	UniProtKB/TrEMBL
PRINTS	APODVERTBRTE	UniProtKB/TrEMBL
	APOLIPOPROTD	UniProtKB/TrEMBL
	LIPOCALIN	UniProtKB/TrEMBL
PROSITE	LIPOCALIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50814	UniProtKB/TrEMBL
UniProt	A0A8C0JNN1	ENTREZGENE
	A0A8C0PAS7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PCD2_CANLF	UniProtKB/TrEMBL
	A0A8I3Q4W1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QYR0_CANLF	UniProtKB/TrEMBL
	A0A8I3S7Q9_CANLF	UniProtKB/TrEMBL
	A0A8I3S7R2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PI89_CANLF	UniProtKB/TrEMBL
	A0A8P0SHY2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SID9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38001	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD