TRPV3 (transient receptor potential cation channel subfamily V member 3) - Rat Genome Database

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Gene: TRPV3 (transient receptor potential cation channel subfamily V member 3) Canis lupus familiaris
Analyze
Symbol: TRPV3
Name: transient receptor potential cation channel subfamily V member 3
RGD ID: 12079098
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of calcium ion import (ortholog); response to temperature stimulus (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); FOUND IN cilium (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,365,275 - 47,398,198 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,368,544 - 47,401,362 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,528,079 - 46,563,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,209,963 - 48,245,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,213,257 - 48,242,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,982,521 - 47,018,152 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,274,342 - 47,311,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,331,441 - 47,367,082 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRPV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,365,275 - 47,398,198 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,368,544 - 47,401,362 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,528,079 - 46,563,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,209,963 - 48,245,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,213,257 - 48,242,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,982,521 - 47,018,152 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,274,342 - 47,311,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,331,441 - 47,367,082 (-)NCBIUU_Cfam_GSD_1.0
TRPV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,510,502 - 3,557,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,510,502 - 3,557,812 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,413,796 - 3,461,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,363,236 - 3,408,039 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,363,235 - 3,408,039NCBI
Celera173,430,192 - 3,475,028 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,305,340 - 3,352,994 (-)NCBIHuRef
CHM1_1173,424,206 - 3,472,113 (-)NCBICHM1_1
T2T-CHM13v2.0173,399,413 - 3,446,868 (-)NCBIT2T-CHM13v2.0
Trpv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,158,315 - 73,191,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,158,214 - 73,191,189 (+)EnsemblGRCm39 Ensembl
GRCm381173,267,489 - 73,300,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,267,388 - 73,300,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,081,122 - 73,110,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,083,815 - 73,113,395 (+)NCBIMGSCv36mm8
Celera1180,804,879 - 80,834,418 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
Trpv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,382,054 - 58,413,657 (+)NCBIGRCr8
mRatBN7.21057,883,546 - 57,915,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,883,546 - 57,913,296 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,539,748 - 62,569,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,028,216 - 62,057,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,527,346 - 57,557,111 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,829,755 - 59,863,780 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,831,241 - 59,860,987 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,570,474 - 59,600,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,126,243 - 60,171,718 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1057,006,489 - 57,036,234 (+)NCBICelera
Cytogenetic Map10q24NCBI
Trpv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,248,599 - 13,276,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,246,099 - 13,276,741 (+)NCBIChiLan1.0ChiLan1.0
TRPV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,119,398 - 11,157,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,085,828 - 13,123,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,528,734 - 3,577,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,516,209 - 3,603,787 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,516,209 - 3,603,787 (-)Ensemblpanpan1.1panPan2
Trpv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,630,463 - 55,663,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677239,435 - 270,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,635,927 - 49,671,613 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,638,852 - 49,671,671 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,498,820 - 51,529,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242154
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,975,771 - 3,062,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,019,602 - 3,059,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,770,240 - 18,816,909 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,194,638 - 6,221,887 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,191,463 - 6,224,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRPV3
567 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 6 6 6 8
Below cutoff 5 5 22 6 6 6 6 10 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000030726   ⟹   ENSCAFP00000028560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl947,368,544 - 47,401,362 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845028189   ⟹   ENSCAFP00845022182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl948,213,257 - 48,242,979 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845028226   ⟹   ENSCAFP00845022208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl948,213,446 - 48,242,979 (-)Ensembl
RefSeq Acc Id: XM_022423480   ⟹   XP_022279188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1947,365,275 - 47,398,198 (-)NCBI
Dog10K_Boxer_Tasha946,528,079 - 46,563,685 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038486679   ⟹   XP_038342607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1946,982,521 - 47,018,152 (-)NCBI
RefSeq Acc Id: XM_038548546   ⟹   XP_038404474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0947,331,441 - 47,367,082 (-)NCBI
RefSeq Acc Id: XM_038612487   ⟹   XP_038468415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0947,274,342 - 47,311,364 (-)NCBI
RefSeq Acc Id: XM_038677763   ⟹   XP_038533691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0948,209,963 - 48,245,709 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_022279188   ⟸   XM_022423480
- UniProtKB: A0A8C0Q016 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028560   ⟸   ENSCAFT00000030726
RefSeq Acc Id: XP_038342607   ⟸   XM_038486679
RefSeq Acc Id: XP_038468415   ⟸   XM_038612487
RefSeq Acc Id: XP_038533691   ⟸   XM_038677763
- UniProtKB: A0A8C0Q016 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038404474   ⟸   XM_038548546
- UniProtKB: A0A8C0Q016 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845022182   ⟸   ENSCAFT00845028189
RefSeq Acc Id: ENSCAFP00845022208   ⟸   ENSCAFT00845028226
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019336 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010473 UniProtKB/TrEMBL
  ENSCAFG00040003949 UniProtKB/TrEMBL
  ENSCAFG00845015758 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030726.5 UniProtKB/TrEMBL
  ENSCAFT00000104042.1 UniProtKB/TrEMBL
  ENSCAFT00030020083.1 UniProtKB/TrEMBL
  ENSCAFT00040007520.1 UniProtKB/TrEMBL
  ENSCAFT00845028189 ENTREZGENE
  ENSCAFT00845028189.1 UniProtKB/TrEMBL
  ENSCAFT00845028226.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRPV UniProtKB/TrEMBL
  TrpV1-4 UniProtKB/TrEMBL
NCBI Gene TRPV3 ENTREZGENE
PANTHER PTHR10582 UniProtKB/TrEMBL
  PTHR10582:SF6 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS TRPVRECEPTOR UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C0MVE2_CANLF UniProtKB/TrEMBL
  A0A8C0Q016 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P6G6_CANLF UniProtKB/TrEMBL
  A0A8I3S1R0_CANLF UniProtKB/TrEMBL
  A0A8P0TT79_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47884 ENTREZGENE