LRRC7 (leucine rich repeat containing 7) - Rat Genome Database

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Gene: LRRC7 (leucine rich repeat containing 7) Canis lupus familiaris
Analyze
Symbol: LRRC7
Name: leucine rich repeat containing 7
RGD ID: 12075296
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN positive regulation of neuron projection development (ortholog); response to organic cyclic compound (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); axon initial segment (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1675,578,651 - 75,964,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl676,170,136 - 76,671,316 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1675,723,968 - 76,216,099 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LRRC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1675,578,651 - 75,964,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl676,170,136 - 76,671,316 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1675,723,968 - 76,216,099 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBIUU_Cfam_GSD_1.0
LRRC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38169,567,922 - 70,144,364 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl169,567,922 - 70,151,945 (+)EnsemblGRCh38hg38GRCh38
GRCh37170,033,605 - 70,610,047 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36169,998,446 - 70,361,759 (+)NCBINCBI36Build 36hg18NCBI36
Build 34169,937,878 - 70,299,947NCBI
Celera168,515,739 - 68,879,117 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef168,336,211 - 68,700,364 (+)NCBIHuRef
CHM1_1170,341,207 - 70,704,575 (+)NCBICHM1_1
T2T-CHM13v2.0169,444,558 - 70,022,853 (+)NCBIT2T-CHM13v2.0
Lrrc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393157,772,823 - 158,268,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3157,788,528 - 158,267,858 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl3157,772,823 - 157,781,749 (-)EnsemblGRCm39 Ensembl
GRCm383158,067,186 - 158,561,983 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3158,082,891 - 158,562,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv373157,747,403 - 158,225,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363158,018,188 - 158,497,514 (-)NCBIMGSCv36mm8
Celera3164,551,795 - 165,021,656 (-)NCBICelera
Cytogenetic Map3H4NCBI
cM Map381.68NCBI
Lrrc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82249,792,441 - 250,294,267 (-)NCBIGRCr8
mRatBN7.22247,146,616 - 247,634,945 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2247,147,752 - 247,634,547 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2254,879,113 - 255,357,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02252,772,486 - 253,250,577 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02247,741,203 - 248,227,243 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02264,910,594 - 265,300,860 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,910,594 - 265,300,868 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02283,549,882 - 283,934,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42256,228,792 - 256,644,029 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12256,243,398 - 256,458,663 (-)NCBI
Celera2238,947,973 - 239,318,491 (-)NCBICelera
Cytogenetic Map2q45NCBI
Lrrc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542321,769,366 - 22,269,781 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542321,764,046 - 22,269,590 (-)NCBIChiLan1.0ChiLan1.0
LRRC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21156,729,554 - 157,306,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11155,889,299 - 156,466,539 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0168,802,557 - 69,359,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1170,792,893 - 71,345,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl170,794,254 - 71,343,917 (+)Ensemblpanpan1.1panPan2
Lrrc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505882,071,931 - 82,603,512 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365911,900,334 - 2,416,912 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365911,905,434 - 2,417,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6142,735,890 - 143,274,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16142,735,676 - 143,273,992 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26132,308,495 - 132,436,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12063,016,441 - 63,567,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2063,018,105 - 63,565,817 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603354,048,609 - 54,605,591 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474225,863,434 - 26,243,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474225,849,355 - 26,384,417 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRC7
6212 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 8
Below cutoff 5 5 22 6 6 6 6 4 6 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005622061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_547339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005361438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005370095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005395957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005429182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000032532   ⟹   ENSCAFP00000030298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,780,188 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000043481   ⟹   ENSCAFP00000037251
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000049301   ⟹   ENSCAFP00000040810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000049717   ⟹   ENSCAFP00000037117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065352   ⟹   ENSCAFP00000046520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000086482   ⟹   ENSCAFP00000051645
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,964,156 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091591   ⟹   ENSCAFP00000060540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl675,580,515 - 75,670,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023638   ⟹   ENSCAFP00845018555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,170,136 - 76,263,828 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023685   ⟹   ENSCAFP00845018593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,173,362 - 76,671,316 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023763   ⟹   ENSCAFP00845018648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,173,362 - 76,671,316 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023842   ⟹   ENSCAFP00845018720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,173,362 - 76,671,316 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023939   ⟹   ENSCAFP00845018802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,173,362 - 76,671,316 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845024016   ⟹   ENSCAFP00845018862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,173,362 - 76,563,822 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845024111   ⟹   ENSCAFP00845018940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl676,266,134 - 76,671,316 (-)Ensembl
RefSeq Acc Id: XM_005622061   ⟹   XP_005622118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1675,578,651 - 75,964,156 (-)NCBI
Dog10K_Boxer_Tasha678,192,058 - 78,577,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038480337   ⟹   XP_038336265
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1675,723,968 - 76,216,099 (-)NCBI
RefSeq Acc Id: XM_038541682   ⟹   XP_038397610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038541683   ⟹   XP_038397611
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,120,686 - 76,506,593 (-)NCBI
RefSeq Acc Id: XM_038541684   ⟹   XP_038397612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038541685   ⟹   XP_038397613
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,122,519 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038541686   ⟹   XP_038397614
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038541687   ⟹   XP_038397615
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,120,686 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038541688   ⟹   XP_038397616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,320,410 - 76,612,920 (-)NCBI
RefSeq Acc Id: XM_038557702   ⟹   XP_038413630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038557712   ⟹   XP_038413640
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038557721   ⟹   XP_038413649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,193,891 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038557722   ⟹   XP_038413650
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038557729   ⟹   XP_038413657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,192,058 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038557739   ⟹   XP_038413667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,391,247 - 78,683,655 (-)NCBI
RefSeq Acc Id: XM_038605820   ⟹   XP_038461748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038605821   ⟹   XP_038461749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,619,437 - 76,011,010 (-)NCBI
RefSeq Acc Id: XM_038605822   ⟹   XP_038461750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038605823   ⟹   XP_038461751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,621,270 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038605824   ⟹   XP_038461752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038605825   ⟹   XP_038461753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,619,437 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038605826   ⟹   XP_038461754
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,818,620 - 76,117,489 (-)NCBI
RefSeq Acc Id: XM_038670415   ⟹   XP_038526343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBI
RefSeq Acc Id: XM_038670416   ⟹   XP_038526344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,172,143 - 76,563,822 (-)NCBI
RefSeq Acc Id: XM_038670417   ⟹   XP_038526345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBI
RefSeq Acc Id: XM_038670418   ⟹   XP_038526346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,173,976 - 76,670,419 (-)NCBI
RefSeq Acc Id: XM_038670419   ⟹   XP_038526347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBI
RefSeq Acc Id: XM_038670420   ⟹   XP_038526348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,172,143 - 76,670,419 (-)NCBI
RefSeq Acc Id: XM_038670421   ⟹   XP_038526349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,371,581 - 76,670,419 (-)NCBI
RefSeq Acc Id: XR_005361438
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0676,164,376 - 76,612,920 (-)NCBI
RefSeq Acc Id: XR_005370095
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha678,235,654 - 78,683,655 (-)NCBI
RefSeq Acc Id: XR_005395957
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0675,663,046 - 76,117,489 (-)NCBI
RefSeq Acc Id: XR_005429182
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0676,215,868 - 76,670,419 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005622118 (Get FASTA)   NCBI Sequence Viewer  
  XP_038336265 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413640 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413649 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413650 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413657 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461748 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461749 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461750 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461751 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461752 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461753 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461754 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526345 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526346 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526349 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000030298.4
  ENSCAFP00000037117.3
  ENSCAFP00000037251.3
  ENSCAFP00000040810.3
  ENSCAFP00000046520.1
  ENSCAFP00000051645.2
  ENSCAFP00000060540.1
  ENSCAFP00030024682.1
  ENSCAFP00030024858.1
  ENSCAFP00030024985.1
  ENSCAFP00030025149.1
  ENSCAFP00030025284.1
  ENSCAFP00030025416.1
  ENSCAFP00030025463.1
  ENSCAFP00030025504.1
  ENSCAFP00030025648.1
  ENSCAFP00040003235.1
  ENSCAFP00040003251.1
  ENSCAFP00040003261.1
  ENSCAFP00040003264.1
  ENSCAFP00845018555.1
  ENSCAFP00845018593
  ENSCAFP00845018593.1
  ENSCAFP00845018648
  ENSCAFP00845018648.1
  ENSCAFP00845018720
  ENSCAFP00845018720.1
  ENSCAFP00845018802
  ENSCAFP00845018802.1
  ENSCAFP00845018862
  ENSCAFP00845018862.1
  ENSCAFP00845018940
  ENSCAFP00845018940.1
Reference Protein Sequences
RefSeq Acc Id: XP_005622118   ⟸   XM_005622061
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SZJ5 (UniProtKB/TrEMBL),   A0A8C0NJU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000040810   ⟸   ENSCAFT00000049301
RefSeq Acc Id: ENSCAFP00000037117   ⟸   ENSCAFT00000049717
RefSeq Acc Id: ENSCAFP00000060540   ⟸   ENSCAFT00000091591
RefSeq Acc Id: ENSCAFP00000051645   ⟸   ENSCAFT00000086482
RefSeq Acc Id: ENSCAFP00000037251   ⟸   ENSCAFT00000043481
RefSeq Acc Id: ENSCAFP00000046520   ⟸   ENSCAFT00000065352
RefSeq Acc Id: ENSCAFP00000030298   ⟸   ENSCAFT00000032532
RefSeq Acc Id: XP_038336265   ⟸   XM_038480337
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461752   ⟸   XM_038605824
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038461753   ⟸   XM_038605825
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038461750   ⟸   XM_038605822
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038461748   ⟸   XM_038605820
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461749   ⟸   XM_038605821
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461751   ⟸   XM_038605823
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038461754   ⟸   XM_038605826
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038526347   ⟸   XM_038670419
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NQ42 (UniProtKB/TrEMBL),   A0A8P0P1F0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526348   ⟸   XM_038670420
- Peptide Label: isoform X6
- UniProtKB: A0A8I3RXH9 (UniProtKB/TrEMBL),   A0A8C0NH66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526345   ⟸   XM_038670417
- Peptide Label: isoform X3
- UniProtKB: A0A8I3RXG8 (UniProtKB/TrEMBL),   A0A8C0NJ76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526343   ⟸   XM_038670415
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NQC1 (UniProtKB/TrEMBL),   A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526344   ⟸   XM_038670416
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NQA6 (UniProtKB/TrEMBL),   A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526346   ⟸   XM_038670418
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526349   ⟸   XM_038670421
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RVR8 (UniProtKB/TrEMBL),   A0A8I3NEN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413650   ⟸   XM_038557722
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NQ42 (UniProtKB/TrEMBL),   A0A8P0P1F0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413657   ⟸   XM_038557729
- Peptide Label: isoform X6
- UniProtKB: A0A8P0SS71 (UniProtKB/TrEMBL),   A0A8C0NH66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413640   ⟸   XM_038557712
- Peptide Label: isoform X3
- UniProtKB: A0A8P0SUQ5 (UniProtKB/TrEMBL),   A0A8C0NJ76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413630   ⟸   XM_038557702
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RL58 (UniProtKB/TrEMBL),   A0A8P0NP40 (UniProtKB/TrEMBL),   A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413649   ⟸   XM_038557721
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413667   ⟸   XM_038557739
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RVR8 (UniProtKB/TrEMBL),   A0A8I3NEN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397614   ⟸   XM_038541686
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NQ42 (UniProtKB/TrEMBL),   A0A8P0P1F0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397615   ⟸   XM_038541687
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NH66 (UniProtKB/TrEMBL),   A0A8P0SS71 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397612   ⟸   XM_038541684
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NJ76 (UniProtKB/TrEMBL),   A0A8P0SUQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397610   ⟸   XM_038541682
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NJU6 (UniProtKB/TrEMBL),   A0A8C0RL58 (UniProtKB/TrEMBL),   A0A8P0NP40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397611   ⟸   XM_038541683
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NJU6 (UniProtKB/TrEMBL),   A0A8P0SZJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397613   ⟸   XM_038541685
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NJU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397616   ⟸   XM_038541688
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RVR8 (UniProtKB/TrEMBL),   A0A8I3NEN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845018802   ⟸   ENSCAFT00845023939
RefSeq Acc Id: ENSCAFP00845018862   ⟸   ENSCAFT00845024016
RefSeq Acc Id: ENSCAFP00845018720   ⟸   ENSCAFT00845023842
RefSeq Acc Id: ENSCAFP00845018555   ⟸   ENSCAFT00845023638
RefSeq Acc Id: ENSCAFP00845018593   ⟸   ENSCAFT00845023685
RefSeq Acc Id: ENSCAFP00845018940   ⟸   ENSCAFT00845024111
RefSeq Acc Id: ENSCAFP00845018648   ⟸   ENSCAFT00845023763
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029530 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014676 UniProtKB/TrEMBL
  ENSCAFG00040001978 UniProtKB/TrEMBL
  ENSCAFG00845013252 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000032532.4 UniProtKB/TrEMBL
  ENSCAFT00000043481.3 UniProtKB/TrEMBL
  ENSCAFT00000049301.4 UniProtKB/TrEMBL
  ENSCAFT00000049717.4 UniProtKB/TrEMBL
  ENSCAFT00000065352.2 UniProtKB/TrEMBL
  ENSCAFT00000086482.2 UniProtKB/TrEMBL
  ENSCAFT00000091591.2 UniProtKB/TrEMBL
  ENSCAFT00030028286.1 UniProtKB/TrEMBL
  ENSCAFT00030028496.1 UniProtKB/TrEMBL
  ENSCAFT00030028652.1 UniProtKB/TrEMBL
  ENSCAFT00030028848.1 UniProtKB/TrEMBL
  ENSCAFT00030029002.1 UniProtKB/TrEMBL
  ENSCAFT00030029151.1 UniProtKB/TrEMBL
  ENSCAFT00030029210.1 UniProtKB/TrEMBL
  ENSCAFT00030029258.1 UniProtKB/TrEMBL
  ENSCAFT00030029431.1 UniProtKB/TrEMBL
  ENSCAFT00040003761.1 UniProtKB/TrEMBL
  ENSCAFT00040003781.1 UniProtKB/TrEMBL
  ENSCAFT00040003795.1 UniProtKB/TrEMBL
  ENSCAFT00040003800.1 UniProtKB/TrEMBL
  ENSCAFT00845023638.1 UniProtKB/TrEMBL
  ENSCAFT00845023685 ENTREZGENE
  ENSCAFT00845023685.1 UniProtKB/TrEMBL
  ENSCAFT00845023763 ENTREZGENE
  ENSCAFT00845023763.1 UniProtKB/TrEMBL
  ENSCAFT00845023842 ENTREZGENE
  ENSCAFT00845023842.1 UniProtKB/TrEMBL
  ENSCAFT00845023939 ENTREZGENE
  ENSCAFT00845023939.1 UniProtKB/TrEMBL
  ENSCAFT00845024016 ENTREZGENE
  ENSCAFT00845024016.1 UniProtKB/TrEMBL
  ENSCAFT00845024111 ENTREZGENE
  ENSCAFT00845024111.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report cfa:490218 UniProtKB/TrEMBL
NCBI Gene LRRC7 ENTREZGENE
PANTHER DISCS LARGE UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  Outer arm dynein light chain 1 UniProtKB/TrEMBL
  RNI-like UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A8C0NEM5_CANLF UniProtKB/TrEMBL
  A0A8C0NH66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NI07_CANLF UniProtKB/TrEMBL
  A0A8C0NIR2_CANLF UniProtKB/TrEMBL
  A0A8C0NJ76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NJU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PRZ8_CANLF UniProtKB/TrEMBL
  A0A8C0PWD9_CANLF UniProtKB/TrEMBL
  A0A8C0RL17_CANLF UniProtKB/TrEMBL
  A0A8C0RL58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RVR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NEN6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJG2_CANLF UniProtKB/TrEMBL
  A0A8I3NQ42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NQA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NQC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RXG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RXH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NP40 ENTREZGENE
  A0A8P0P1F0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SS71 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SUQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SZJ5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0NP40 UniProtKB/TrEMBL
VGNC ID VGNC:54044 ENTREZGENE