MSH2 (mutS homolog 2) - Rat Genome Database

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Gene: MSH2 (mutS homolog 2) Canis lupus familiaris
Analyze
Symbol: MSH2
Name: mutS homolog 2
RGD ID: 12073611
Description: ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); dinucleotide insertion or deletion binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell mediated immunity (ortholog); determination of adult lifespan (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH ascending colon cancer (ortholog); bile duct cancer (ortholog); breast cancer (ortholog); FOUND IN MutSalpha complex (ortholog); MutSbeta complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA mismatch repair protein Msh2; mutS homolog 2, colon cancer, nonpolyposis type 1; mutS-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,517,448 - 49,594,001 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1049,517,369 - 49,594,210 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1049,372,675 - 49,449,176 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01050,390,734 - 50,467,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1050,390,727 - 50,467,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11050,098,560 - 50,174,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01050,386,621 - 50,461,201 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01050,572,222 - 50,649,102 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
ascending colon cancer  (ISO)
bile duct cancer  (ISO)
breast cancer  (ISO)
breast carcinoma  (ISO)
cervix uteri carcinoma in situ  (ISO)
colitis  (ISO)
colon cancer  (ISO)
colon carcinoma  (ISO)
Colon Diverticulum  (ISO)
Colonic Polyps  (ISO)
colorectal adenocarcinoma  (ISO)
colorectal cancer  (ISO)
Colorectal Neoplasms  (ISO)
endometrial carcinoma  (ISO)
Endometrial Neoplasms  (ISO)
esophagus squamous cell carcinoma  (ISO)
genetic disease  (ISO)
Germ Cell and Embryonal Neoplasms  (ISO)
glioblastoma  (ISO)
hepatoblastoma  (ISO)
hereditary breast ovarian cancer syndrome  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
high grade glioma  (ISO)
Huntington's disease  (ISO)
Hydatidiform Mole  (ISO)
Hydatidiform Mole, Invasive  (ISO)
laryngeal squamous cell carcinoma  (ISO)
lung adenocarcinoma  (ISO)
lung cancer  (ISO)
lung non-small cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
Lynch syndrome  (ISO)
Lynch syndrome 1  (ISO)
mismatch repair cancer syndrome  (ISO)
Mismatch Repair Cancer Syndrome 1  (ISO)
Mismatch Repair Cancer Syndrome 2  (ISO)
Muir-Torre syndrome  (ISO)
Neoplasm Metastasis  (ISO)
osteosarcoma  (ISO)
ovarian cancer  (ISO)
ovarian cyst  (ISO)
Ovarian Neoplasms  (ISO)
Pitt-Hopkins-like syndrome 2  (ISO)
prostate cancer  (ISO)
renal cell carcinoma  (ISO)
Renal Cell Carcinoma 1  (ISO)
rhabdomyosarcoma  (ISO)
sarcoma  (ISO)
sigmoid colon cancer  (ISO)
sigmoid neoplasm  (ISO)
stomach cancer  (ISO)
transitional cell carcinoma  (ISO)
urinary bladder cancer  (ISO)
Urogenital Neoplasms  (ISO)
Uterine Cervical Neoplasms  (ISO)
uterine corpus cancer  (ISO)
visual epilepsy  (ISO)
Vulvar Neoplasms  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
MutSalpha complex  (IEA,ISO)
MutSbeta complex  (IEA,ISO)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MSH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,517,448 - 49,594,001 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1049,517,369 - 49,594,210 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1049,372,675 - 49,449,176 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01050,390,734 - 50,467,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1050,390,727 - 50,467,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11050,098,560 - 50,174,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01050,386,621 - 50,461,201 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01050,572,222 - 50,649,102 (+)NCBIUU_Cfam_GSD_1.0
MSH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38247,403,067 - 47,709,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl247,403,067 - 47,663,146 (+)EnsemblGRCh38hg38GRCh38
GRCh37247,630,206 - 47,710,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,483,767 - 47,563,864 (+)NCBINCBI36Build 36hg18NCBI36
Build 34247,541,913 - 47,622,011NCBI
Celera247,469,014 - 47,549,030 (+)NCBICelera
Cytogenetic Map2p21-p16.3NCBI
HuRef247,367,170 - 47,445,840 (+)NCBIHuRef
CHM1_1247,560,266 - 47,640,762 (+)NCBICHM1_1
T2T-CHM13v2.0247,408,101 - 47,714,827 (+)NCBIT2T-CHM13v2.0
Msh2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,979,960 - 88,031,141 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1787,979,758 - 88,031,141 (+)EnsemblGRCm39 Ensembl
GRCm381787,672,532 - 87,723,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1787,672,330 - 87,723,713 (+)EnsemblGRCm38mm10GRCm38
MGSCv371788,071,897 - 88,123,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361787,580,883 - 87,632,039 (+)NCBIMGSCv36mm8
Celera1792,079,522 - 92,130,140 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1757.87NCBI
Msh2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8612,567,368 - 12,626,534 (-)NCBIGRCr8
mRatBN7.266,813,793 - 6,872,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl66,813,795 - 6,872,938 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,095,880 - 7,155,017 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.067,405,284 - 7,464,421 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.066,932,416 - 6,991,551 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0611,215,951 - 11,274,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl611,215,963 - 11,274,932 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0621,198,374 - 21,256,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4611,199,906 - 11,258,350 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1611,199,905 - 11,258,350 (+)NCBI
Celera66,571,260 - 6,630,220 (-)NCBICelera
Cytogenetic Map6q12NCBI
Msh2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544114,187,805 - 14,247,698 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544114,188,315 - 14,247,608 (+)NCBIChiLan1.0ChiLan1.0
MSH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21278,853,510 - 78,981,234 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A78,857,477 - 78,985,200 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A47,524,468 - 47,602,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A48,447,207 - 48,525,638 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A48,447,207 - 48,554,461 (+)Ensemblpanpan1.1panPan2
Msh2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629233,515,476 - 33,584,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365084,944,007 - 5,013,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365084,943,987 - 5,013,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,081,219 - 93,163,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,082,958 - 93,163,556 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,052,166 - 99,101,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2399,274,469 - 99,306,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11459,730,101 - 59,802,857 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1459,729,789 - 59,802,819 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604552,045,654 - 52,118,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msh2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473828,780,614 - 28,861,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473828,780,596 - 28,861,523 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MSH2
735 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 11 1 6 7 10 1
Low 5 5 11 6 5 6 6 5 8 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000004191   ⟹   ENSCAFP00000003876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1049,517,369 - 49,593,879 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061270   ⟹   ENSCAFP00000050178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1049,517,369 - 49,593,879 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075754   ⟹   ENSCAFP00000049239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1049,517,369 - 49,594,210 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077976   ⟹   ENSCAFP00000050577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1049,517,369 - 49,592,181 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845009548   ⟹   ENSCAFP00845007465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1050,390,727 - 50,467,285 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845009588   ⟹   ENSCAFP00845007500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1050,390,727 - 50,467,285 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845009624   ⟹   ENSCAFP00845007521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1050,390,727 - 50,467,285 (+)Ensembl
RefSeq Acc Id: XM_038489230   ⟹   XP_038345158
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11050,098,560 - 50,174,750 (+)NCBI
RefSeq Acc Id: XM_038551233   ⟹   XP_038407161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01050,572,222 - 50,649,102 (+)NCBI
RefSeq Acc Id: XM_038615130   ⟹   XP_038471058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01050,386,621 - 50,461,201 (+)NCBI
RefSeq Acc Id: XM_038680513   ⟹   XP_038536441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01050,390,734 - 50,467,292 (+)NCBI
RefSeq Acc Id: XM_538482   ⟹   XP_538482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11049,517,448 - 49,594,001 (+)NCBI
Dog10K_Boxer_Tasha1049,372,675 - 49,449,176 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_538482   ⟸   XM_538482
- UniProtKB: A0A8C0SBJ9 (UniProtKB/TrEMBL),   A0A8I3MVG3 (UniProtKB/TrEMBL),   A0A8C0SBY1 (UniProtKB/TrEMBL),   A0A8I3MT63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000003876   ⟸   ENSCAFT00000004191
RefSeq Acc Id: ENSCAFP00000050577   ⟸   ENSCAFT00000077976
RefSeq Acc Id: ENSCAFP00000050178   ⟸   ENSCAFT00000061270
RefSeq Acc Id: ENSCAFP00000049239   ⟸   ENSCAFT00000075754
RefSeq Acc Id: XP_038345158   ⟸   XM_038489230
RefSeq Acc Id: XP_038471058   ⟸   XM_038615130
RefSeq Acc Id: XP_038536441   ⟸   XM_038680513
- UniProtKB: A0A8C0SBJ9 (UniProtKB/TrEMBL),   A0A8I3MVG3 (UniProtKB/TrEMBL),   A0A8C0SBY1 (UniProtKB/TrEMBL),   A0A8I3MT63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407161   ⟸   XM_038551233
- UniProtKB: A0A8C0SBJ9 (UniProtKB/TrEMBL),   A0A8C0SBY1 (UniProtKB/TrEMBL),   A0A8I3MT63 (UniProtKB/TrEMBL),   A0A8I3MVG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845007521   ⟸   ENSCAFT00845009624
RefSeq Acc Id: ENSCAFP00845007500   ⟸   ENSCAFT00845009588
RefSeq Acc Id: ENSCAFP00845007465   ⟸   ENSCAFT00845009548
Protein Domains
DNA mismatch repair proteins mutS family

Promoters
RGD ID:13685059
Promoter ID:EPDNEW_C3127
Type:single initiation site
Name:MSH2_1
Description:mutS homolog 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11049,517,362 - 49,517,422EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002659 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009214 UniProtKB/TrEMBL
  ENSCAFG00040011860 UniProtKB/TrEMBL
  ENSCAFG00845005364 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004191.5 UniProtKB/TrEMBL
  ENSCAFT00000061270.2 UniProtKB/TrEMBL
  ENSCAFT00000075754.2 UniProtKB/TrEMBL
  ENSCAFT00030017064.1 UniProtKB/TrEMBL
  ENSCAFT00030017258.1 UniProtKB/TrEMBL
  ENSCAFT00030017361.1 UniProtKB/TrEMBL
  ENSCAFT00030017465.1 UniProtKB/TrEMBL
  ENSCAFT00040021886.1 UniProtKB/TrEMBL
  ENSCAFT00040021980.1 UniProtKB/TrEMBL
  ENSCAFT00040022078.1 UniProtKB/TrEMBL
  ENSCAFT00040022191.1 UniProtKB/TrEMBL
  ENSCAFT00845009548 ENTREZGENE
  ENSCAFT00845009548.1 UniProtKB/TrEMBL
  ENSCAFT00845009588.1 UniProtKB/TrEMBL
  ENSCAFT00845009624.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1420.10 UniProtKB/TrEMBL
  3.30.420.110 UniProtKB/TrEMBL
  3.40.1170.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair_Msh2 UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS-lik_N UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS_C UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS_clamp UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS_core UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS_N UniProtKB/TrEMBL
  DNA_mismatch_repair_MutS_sf UniProtKB/TrEMBL
  DNA_mmatch_repair_MutS_con_dom UniProtKB/TrEMBL
  Msh2 UniProtKB/TrEMBL
  MutS_con_dom_sf UniProtKB/TrEMBL
  MutS_family UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report cfa:494002 UniProtKB/TrEMBL
NCBI Gene MSH2 ENTREZGENE
PANTHER PTHR11361 UniProtKB/TrEMBL
  PTHR11361:SF35 UniProtKB/TrEMBL
Pfam MutS_I UniProtKB/TrEMBL
  MutS_II UniProtKB/TrEMBL
  MutS_III UniProtKB/TrEMBL
  MutS_IV UniProtKB/TrEMBL
  MutS_V UniProtKB/TrEMBL
PIRSF MSH2 UniProtKB/TrEMBL
PROSITE DNA_MISMATCH_REPAIR_2 UniProtKB/TrEMBL
SMART MUTSac UniProtKB/TrEMBL
  MUTSd UniProtKB/TrEMBL
Superfamily-SCOP SSF48334 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0MUR4_CANLF UniProtKB/TrEMBL
  A0A8C0MX76_CANLF UniProtKB/TrEMBL
  A0A8C0SBJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SBY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SCC3_CANLF UniProtKB/TrEMBL
  A0A8I3MT63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MVG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N015_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43438 ENTREZGENE