CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5) - Rat Genome Database

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Gene: CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5) Canis lupus familiaris
Analyze
Symbol: CACNG5
Name: calcium voltage-gated channel auxiliary subunit gamma 5
RGD ID: 12072126
Description: ENCODES a protein that exhibits channel regulator activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transmembrane transport (inferred); calcium ion transport (inferred); neurotransmitter receptor internalization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-5 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,575,902 - 13,587,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,578,805 - 13,615,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,238,906 - 15,278,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,310,392 - 13,349,413 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,575,902 - 13,587,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,578,805 - 13,615,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,238,906 - 15,278,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,310,392 - 13,349,413 (+)NCBIUU_Cfam_GSD_1.0
CACNG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,835,117 - 66,894,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,835,117 - 66,894,751 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,831,235 - 64,890,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,303,913 - 62,311,819 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,303,912 - 62,311,561NCBI
Celera1761,446,119 - 61,454,026 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,262,608 - 60,270,613 (+)NCBIHuRef
CHM1_11764,937,383 - 64,945,388 (+)NCBICHM1_1
T2T-CHM13v2.01767,710,939 - 67,770,522 (+)NCBIT2T-CHM13v2.0
Cacng5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,765,431 - 107,805,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,765,431 - 107,805,881 (-)EnsemblGRCm39 Ensembl
GRCm3811107,874,604 - 107,915,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,874,605 - 107,915,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,735,919 - 107,772,676 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,690,695 - 107,727,452 (-)NCBIMGSCv36mm8
Celera11119,610,080 - 119,648,160 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.44NCBI
Cacng5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,327,142 - 93,369,244 (-)NCBIGRCr8
mRatBN7.21092,827,441 - 92,869,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,829,196 - 92,869,614 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,888,205 - 97,895,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,351,240 - 97,358,289 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,760,001 - 92,766,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01096,122,240 - 96,166,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1096,123,397 - 96,131,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,853,195 - 95,894,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,300,594 - 97,309,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,314,963 - 97,323,393 (-)NCBI
Celera1091,494,396 - 91,501,201 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,110,146 - 6,155,034 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,110,440 - 6,152,677 (+)NCBIChiLan1.0ChiLan1.0
CACNG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,864,777 - 82,924,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,684,073 - 87,743,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,771,501 - 60,831,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11765,979,469 - 66,031,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,979,469 - 66,031,723 (+)Ensemblpanpan1.1panPan2
Cacng5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,984,674 - 13,025,336 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,168,904 - 6,182,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,168,186 - 6,209,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,288,544 - 13,328,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,288,510 - 13,328,811 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,660,097 - 13,696,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,561,040 - 54,612,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,561,317 - 54,569,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,599,437 - 25,654,351 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,517,746 - 1,569,379 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,518,813 - 1,569,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACNG5
173 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 7
Low 3 1 5 8 1 1
Below cutoff 5 5 13 6 5 6 6 6 9 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038485210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_548027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002629802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005407702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005432048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000047939   ⟹   ENSCAFP00000039820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl913,578,805 - 13,587,171 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068058   ⟹   ENSCAFP00000055046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl913,578,805 - 13,615,233 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048565   ⟹   ENSCAFP00845038096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl915,238,906 - 15,278,099 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048603   ⟹   ENSCAFP00845038125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl915,238,906 - 15,249,831 (-)Ensembl
RefSeq Acc Id: XM_038485210   ⟹   XP_038341138
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBI
RefSeq Acc Id: XM_038546809   ⟹   XP_038402737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0913,310,392 - 13,347,769 (+)NCBI
RefSeq Acc Id: XM_038610797   ⟹   XP_038466725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBI
RefSeq Acc Id: XM_038628153   ⟹   XP_038484081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBI
RefSeq Acc Id: XM_038676072   ⟹   XP_038532000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBI
RefSeq Acc Id: XR_005330553
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBI
RefSeq Acc Id: XR_005364295
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0913,310,392 - 13,349,413 (+)NCBI
RefSeq Acc Id: XR_005398721
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBI
RefSeq Acc Id: XR_005407702
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBI
RefSeq Acc Id: XR_005432048
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000055046   ⟸   ENSCAFT00000068058
RefSeq Acc Id: ENSCAFP00000039820   ⟸   ENSCAFT00000047939
RefSeq Acc Id: XP_038341138   ⟸   XM_038485210
RefSeq Acc Id: XP_038466725   ⟸   XM_038610797
RefSeq Acc Id: XP_038532000   ⟸   XM_038676072
- UniProtKB: A0A8C0LQI8 (UniProtKB/TrEMBL),   A0A8C0LQX7 (UniProtKB/TrEMBL),   A0A8I3PXT9 (UniProtKB/TrEMBL),   A0A8C0TB93 (UniProtKB/TrEMBL),   A0A8I3QE39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038484081   ⟸   XM_038628153
- UniProtKB: A0A8C0LQI8 (UniProtKB/TrEMBL),   A0A8C0LQX7 (UniProtKB/TrEMBL),   A0A8I3PXT9 (UniProtKB/TrEMBL),   A0A8C0TB93 (UniProtKB/TrEMBL),   A0A8I3QE39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402737   ⟸   XM_038546809
- UniProtKB: A0A8C0LQI8 (UniProtKB/TrEMBL),   A0A8C0LQX7 (UniProtKB/TrEMBL),   A0A8C0TB93 (UniProtKB/TrEMBL),   A0A8I3PXT9 (UniProtKB/TrEMBL),   A0A8I3QE39 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845038125   ⟸   ENSCAFT00845048603
RefSeq Acc Id: ENSCAFP00845038096   ⟸   ENSCAFT00845048565


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031724 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000111 UniProtKB/TrEMBL
  ENSCAFG00040020535 UniProtKB/TrEMBL
  ENSCAFG00845027555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000068058.2 UniProtKB/TrEMBL
  ENSCAFT00030000145.1 UniProtKB/TrEMBL
  ENSCAFT00030000152.1 UniProtKB/TrEMBL
  ENSCAFT00040037976.1 UniProtKB/TrEMBL
  ENSCAFT00845048565 ENTREZGENE
  ENSCAFT00845048565.1 UniProtKB/TrEMBL
  ENSCAFT00845048603.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g5su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene CACNG5 ENTREZGENE
PANTHER PTHR12107:SF4 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA5 UniProtKB/TrEMBL
UniProt A0A8C0LQI8 ENTREZGENE
  A0A8C0LQX7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TB93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PXT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QE39 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38650 ENTREZGENE