KCNF1 (potassium voltage-gated channel modifier subfamily F member 1) - Rat Genome Database

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Gene: KCNF1 (potassium voltage-gated channel modifier subfamily F member 1) Pan paniscus
Analyze
Symbol: KCNF1
Name: potassium voltage-gated channel modifier subfamily F member 1
RGD ID: 12047245
Description: ENCODES a protein that exhibits monoatomic ion channel activity (inferred); potassium channel activity (inferred); voltage-gated potassium channel activity (inferred); INVOLVED IN monoatomic ion transmembrane transport (inferred); monoatomic ion transport (inferred); non-motile cilium assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel subfamily F member 1; potassium voltage-gated channel, subfamily F, member 1
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,606,651 - 115,608,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,610,622 - 115,612,913 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,906,060 - 10,908,818 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,058,115 - 11,061,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,055,090 - 11,060,758 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,606,651 - 115,608,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,610,622 - 115,612,913 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,906,060 - 10,908,818 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,058,115 - 11,061,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,055,090 - 11,060,758 (+)Ensemblpanpan1.1panPan2
KCNF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,911,934 - 10,914,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,911,934 - 10,914,225 (+)EnsemblGRCh38hg38GRCh38
GRCh37211,052,060 - 11,054,351 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,969,514 - 10,971,802 (+)NCBINCBI36Build 36hg18NCBI36
Build 34211,002,660 - 11,004,948NCBI
Celera210,967,196 - 10,969,484 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,903,225 - 10,905,447 (+)NCBIHuRef
CHM1_1210,982,228 - 10,984,516 (+)NCBICHM1_1
T2T-CHM13v2.0210,941,696 - 10,943,987 (+)NCBIT2T-CHM13v2.0
Kcnf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,222,101 - 17,226,551 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,222,101 - 17,226,889 (-)EnsemblGRCm39 Ensembl
GRCm381217,172,100 - 17,176,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,172,100 - 17,176,888 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,178,906 - 17,183,694 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,197,580 - 17,202,005 (-)NCBIMGSCv36mm8
Celera1217,493,636 - 17,498,423 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
Kcnf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,691,028 - 45,693,706 (-)NCBIGRCr8
mRatBN7.2639,962,301 - 39,964,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,962,307 - 39,964,979 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,289,685 - 40,292,363 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,604,381 - 40,607,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,037,630 - 40,040,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,471,060 - 42,473,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,471,066 - 42,473,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,191,159 - 52,193,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4640,910,390 - 40,913,068 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1640,913,548 - 40,916,021 (-)NCBI
Celera639,263,866 - 39,266,544 (-)NCBICelera
Cytogenetic Map6q16NCBI
KCNF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,752,588 - 7,754,482 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,752,651 - 7,754,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,678,062 - 7,679,917 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,854,763 - 7,856,618 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,817,828 - 7,856,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,740,520 - 7,742,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,743,266 - 7,745,121 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,757,031 - 7,758,886 (+)NCBIUU_Cfam_GSD_1.0
Kcnf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,208,228 - 52,213,417 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365326,963,912 - 6,968,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,664,365 - 125,666,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,664,027 - 125,666,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,494,122 - 134,495,965 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,695,647 - 96,698,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,695,961 - 96,697,445 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,586,797 - 15,590,329 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248654,648,711 - 4,653,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034952614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000062890   ⟹   ENSPPAP00000039977
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A11,055,090 - 11,060,758 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062892   ⟹   ENSPPAP00000039979
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A11,056,839 - 11,060,758 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062895   ⟹   ENSPPAP00000039982
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A11,058,115 - 11,060,758 (+)Ensembl
RefSeq Acc Id: XM_034952614   ⟹   XP_034808505
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212115,606,651 - 115,608,942 (-)NCBI
NHGRI_mPanPan12A115,610,622 - 115,612,913 (-)NCBI
Mhudiblu_PPA_v02A10,906,060 - 10,908,818 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034808505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039977.1
  ENSPPAP00000039979.1
  ENSPPAP00000039982.1
RefSeq Acc Id: XP_034808505   ⟸   XM_034952614
- UniProtKB: A0A2R9CNV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000039977   ⟸   ENSPPAT00000062890
RefSeq Acc Id: ENSPPAP00000039979   ⟸   ENSPPAT00000062892
RefSeq Acc Id: ENSPPAP00000039982   ⟸   ENSPPAT00000062895

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042656 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062890.1 UniProtKB/TrEMBL
  ENSPPAT00000062892.1 UniProtKB/TrEMBL
  ENSPPAT00000062895.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv9 UniProtKB/TrEMBL
  KCNF1-like_BTB_POZ UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene KCNF1 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY F MEMBER 1 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV9CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A2R9CDM2_PANPA UniProtKB/TrEMBL
  A0A2R9CNV0_PANPA UniProtKB/TrEMBL
  A0A2R9CNV2 ENTREZGENE, UniProtKB/TrEMBL