CPT2 (carnitine palmitoyltransferase 2) - Rat Genome Database

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Gene: CPT2 (carnitine palmitoyltransferase 2) Pan paniscus
Analyze
Symbol: CPT2
Name: carnitine palmitoyltransferase 2
RGD ID: 12043826
Description: ENCODES a protein that exhibits carnitine O-palmitoyltransferase activity (ortholog); INVOLVED IN fatty acid beta-oxidation (ortholog); in utero embryonic development (ortholog); response to fatty acid (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine palmitoyltransferase I deficiency pathway; carnitine-acylcarnitine translocase deficiency; ASSOCIATED WITH arthritis (ortholog); brain disease (ortholog); carnitine palmitoyltransferase II deficiency (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carnitine O-palmitoyltransferase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21173,623,572 - 173,641,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,764,332 - 172,781,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0152,469,416 - 52,487,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1154,069,334 - 54,086,994 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl154,069,334 - 54,086,994 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CPT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21173,623,572 - 173,641,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,764,332 - 172,781,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0152,469,416 - 52,487,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1154,069,334 - 54,086,994 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl154,069,334 - 54,086,994 (+)Ensemblpanpan1.1panPan2
CPT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38153,196,824 - 53,214,197 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl153,196,792 - 53,214,197 (+)EnsemblGRCh38hg38GRCh38
GRCh37153,662,496 - 53,679,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36153,434,689 - 53,452,455 (+)NCBINCBI36Build 36hg18NCBI36
Build 34153,374,121 - 53,391,888NCBI
Celera151,949,941 - 51,967,712 (+)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,777,752 - 51,795,523 (+)NCBIHuRef
CHM1_1153,779,095 - 53,796,864 (+)NCBICHM1_1
T2T-CHM13v2.0153,078,266 - 53,095,633 (+)NCBIT2T-CHM13v2.0
Cpt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,761,179 - 107,780,786 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4107,761,178 - 107,780,807 (-)EnsemblGRCm39 Ensembl
GRCm384107,903,982 - 107,923,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4107,903,981 - 107,923,610 (-)EnsemblGRCm38mm10GRCm38
MGSCv374107,576,587 - 107,596,194 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,401,914 - 107,421,466 (-)NCBIMGSCv36mm8
Celera4106,252,864 - 106,272,513 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
Cpt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85127,893,450 - 127,911,347 (-)NCBIGRCr8
mRatBN7.25122,664,677 - 122,682,126 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5122,664,677 - 122,682,095 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5125,284,849 - 125,302,210 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05127,007,897 - 127,025,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05127,059,205 - 127,076,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05127,505,646 - 127,523,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5127,505,614 - 127,523,089 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05131,353,542 - 131,370,821 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,007,685 - 129,025,501 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15129,012,910 - 129,030,727 (-)NCBI
Celera5121,406,314 - 121,423,718 (-)NCBICelera
Cytogenetic Map5q34NCBI
Cpt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554645,942,986 - 5,970,345 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554645,942,986 - 5,970,325 (-)NCBIChiLan1.0ChiLan1.0
CPT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1555,718,209 - 55,786,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl555,718,510 - 55,744,809 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,784,409 - 55,811,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0555,907,324 - 55,933,944 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl555,906,033 - 55,933,959 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1555,899,940 - 55,926,541 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0555,791,152 - 55,817,745 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,180,213 - 56,206,825 (-)NCBIUU_Cfam_GSD_1.0
Cpt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505867,540,611 - 67,558,122 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365227,856,087 - 7,875,685 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365227,858,172 - 7,875,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,036,422 - 159,061,327 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,038,129 - 159,061,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,702,081 - 146,774,794 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12079,710,638 - 79,728,100 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2079,706,584 - 79,727,689 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603337,554,717 - 37,572,175 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249341,250,956 - 1,271,983 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249341,239,849 - 1,271,993 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003815013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000049214   ⟹   ENSPPAP00000026381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl154,069,334 - 54,086,994 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000049224   ⟹   ENSPPAP00000026391
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl154,069,845 - 54,086,392 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000049226   ⟹   ENSPPAP00000026393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl154,069,845 - 54,070,270 (+)Ensembl
RefSeq Acc Id: XM_003815013   ⟹   XP_003815061
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21173,623,572 - 173,641,027 (-)NCBI
NHGRI_mPanPan11172,764,332 - 172,781,782 (-)NCBI
Mhudiblu_PPA_v0152,469,416 - 52,487,166 (+)NCBI
PanPan1.1154,069,334 - 54,086,994 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003815061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000026381.1
  ENSPPAP00000026391.1
  ENSPPAP00000026393.1
Reference Protein Sequences
RefSeq Acc Id: XP_003815061   ⟸   XM_003815013
- UniProtKB: A0A2R9BDL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000026381   ⟸   ENSPPAT00000049214
RefSeq Acc Id: ENSPPAP00000026393   ⟸   ENSPPAT00000049226
RefSeq Acc Id: ENSPPAP00000026391   ⟸   ENSPPAT00000049224
Protein Domains
Choline/carnitine acyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049214.1 UniProtKB/TrEMBL
  ENSPPAT00000049224.1 UniProtKB/TrEMBL
  ENSPPAT00000049226.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.20 UniProtKB/TrEMBL
  1.20.1280.180 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  Carn_acyl_trans_N UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
KEGG Report pps:100983874 UniProtKB/TrEMBL
NCBI Gene CPT2 ENTREZGENE
PANTHER CARNITINE O-PALMITOYLTRANSFERASE 2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR22589 UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
UniProt A0A2R9B9Y4_PANPA UniProtKB/TrEMBL
  A0A2R9BDL0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BDL8_PANPA UniProtKB/TrEMBL