CLCA1 (chloride channel accessory 1) - Rat Genome Database

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Gene: CLCA1 (chloride channel accessory 1) Pan paniscus
Analyze
Symbol: CLCA1
Name: chloride channel accessory 1
RGD ID: 12037359
Description: ENCODES a protein that exhibits intracellularly calcium-gated chloride channel activity (inferred); metal ion binding (inferred); metallopeptidase activity (inferred); INVOLVED IN cellular response to hypoxia (ortholog); ASSOCIATED WITH asbestosis (ortholog); asthma (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN zymogen granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-activated chloride channel regulator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21140,459,454 - 140,491,142 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11139,614,852 - 139,646,540 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,999,099 - 119,030,839 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,852,383 - 87,884,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,852,599 - 87,884,751 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CLCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21140,459,454 - 140,491,142 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11139,614,852 - 139,646,540 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,999,099 - 119,030,839 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,852,383 - 87,884,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,852,599 - 87,884,751 (+)Ensemblpanpan1.1panPan2
CLCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38186,468,927 - 86,500,259 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl186,468,368 - 86,500,259 (+)EnsemblGRCh38hg38GRCh38
GRCh37186,934,610 - 86,965,942 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36186,707,114 - 86,738,565 (+)NCBINCBI36Build 36hg18NCBI36
Build 34186,646,071 - 86,677,963NCBI
Celera185,178,525 - 85,209,980 (+)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef185,045,156 - 85,076,624 (+)NCBIHuRef
CHM1_1187,049,378 - 87,080,831 (+)NCBICHM1_1
T2T-CHM13v2.0186,308,943 - 86,340,288 (+)NCBIT2T-CHM13v2.0
Clca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393144,710,298 - 144,738,537 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3144,709,578 - 144,738,537 (-)EnsemblGRCm39 Ensembl
GRCm383145,004,537 - 145,032,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3145,003,817 - 145,032,776 (-)EnsemblGRCm38mm10GRCm38
MGSCv373144,667,501 - 144,695,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363144,941,924 - 144,970,145 (-)NCBIMGSCv36mm8
Celera3151,445,713 - 151,476,303 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map369.26NCBI
Clca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82236,599,022 - 236,624,714 (-)NCBIGRCr8
mRatBN7.22233,938,677 - 233,964,369 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2233,938,677 - 233,964,369 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2241,727,691 - 241,753,301 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02239,617,800 - 239,643,385 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02234,485,318 - 234,510,926 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02250,897,980 - 250,923,711 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,897,969 - 250,923,744 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02269,425,672 - 269,451,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,057,135 - 243,084,146 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12243,043,871 - 243,070,886 (-)NCBI
Celera2225,927,785 - 225,953,924 (-)NCBICelera
Cytogenetic Map2q44NCBI
Clca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554237,684,709 - 7,714,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554237,684,741 - 7,714,438 (-)NCBIChiLan1.0ChiLan1.0
CLCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1661,620,755 - 61,650,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl661,620,995 - 61,650,083 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha664,334,464 - 64,364,165 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0662,160,281 - 62,189,982 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl662,160,878 - 62,189,975 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1661,693,037 - 61,722,731 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0661,656,245 - 61,686,130 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0662,162,204 - 62,191,927 (-)NCBIUU_Cfam_GSD_1.0
Clca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505896,941,723 - 96,975,427 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936865155,284 - 188,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4129,620,874 - 129,655,385 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14129,621,259 - 129,655,385 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24142,139,255 - 142,173,314 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLCA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12046,930,713 - 46,964,301 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2046,927,412 - 46,963,737 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603370,846,708 - 70,880,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clca1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474211,145,413 - 11,172,369 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474211,145,406 - 11,172,369 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000063233   ⟹   ENSPPAP00000040317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,852,599 - 87,884,751 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063240   ⟹   ENSPPAP00000040324
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,852,987 - 87,884,031 (+)Ensembl
RefSeq Acc Id: XM_003805301   ⟹   XP_003805349
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21140,459,454 - 140,491,142 (-)NCBI
NHGRI_mPanPan11139,614,852 - 139,646,540 (-)NCBI
Mhudiblu_PPA_v01118,999,099 - 119,030,839 (+)NCBI
PanPan1.1187,852,383 - 87,884,267 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003805349 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040317.1
  ENSPPAP00000040324.1
RefSeq Acc Id: XP_003805349   ⟸   XM_003805301
- Sequence:
RefSeq Acc Id: ENSPPAP00000040324   ⟸   ENSPPAT00000063240
RefSeq Acc Id: ENSPPAP00000040317   ⟸   ENSPPAT00000063233
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063233.1 UniProtKB/TrEMBL
  ENSPPAT00000063240.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro CLCA_chordata UniProtKB/TrEMBL
  CLCA_N UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100980788 UniProtKB/TrEMBL
NCBI Gene CLCA1 ENTREZGENE
PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR UniProtKB/TrEMBL
  CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 1 UniProtKB/TrEMBL
Pfam CLCA UniProtKB/TrEMBL
  VWA_2 UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A2R9CEL0_PANPA UniProtKB/TrEMBL
  A0A2R9CPF6_PANPA UniProtKB/TrEMBL