ACSL5 (acyl-CoA synthetase long chain family member 5) - Rat Genome Database

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Gene: ACSL5 (acyl-CoA synthetase long chain family member 5) Pan paniscus
Analyze
Symbol: ACSL5
Name: acyl-CoA synthetase long chain family member 5
RGD ID: 12031170
Description: ENCODES a protein that exhibits long-chain fatty acid-CoA ligase activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); fatty acid transport (ortholog); long-chain fatty-acyl-CoA biosynthetic process (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH Diarrhea 13 (ortholog); Experimental Arthritis (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA synthetase long-chain family member 5; long-chain-fatty-acid--CoA ligase 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,252,488 - 124,305,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,257,822 - 124,307,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010108,965,559 - 109,019,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,405,069 - 112,457,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,407,161 - 112,457,892 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ACSL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,252,488 - 124,305,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,257,822 - 124,307,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010108,965,559 - 109,019,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,405,069 - 112,457,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,407,161 - 112,457,892 (+)Ensemblpanpan1.1panPan2
ACSL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,374,116 - 112,428,376 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,374,116 - 112,428,379 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,133,874 - 114,188,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,123,906 - 114,178,128 (+)NCBINCBI36Build 36hg18NCBI36
Celera10107,861,444 - 107,915,662 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,761,898 - 107,815,784 (+)NCBIHuRef
CHM1_110114,415,634 - 114,469,870 (+)NCBICHM1_1
T2T-CHM13v2.010113,265,142 - 113,319,056 (+)NCBIT2T-CHM13v2.0
Acsl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,240,298 - 55,285,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,240,370 - 55,286,152 (+)EnsemblGRCm39 Ensembl
GRCm381955,251,861 - 55,296,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,251,938 - 55,297,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,327,859 - 55,371,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,306,619 - 55,349,878 (+)NCBIMGSCv36mm8
Celera1957,444,332 - 57,487,767 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.3NCBI
Acsl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,294,851 - 264,341,943 (+)NCBIGRCr8
mRatBN7.21254,289,513 - 254,336,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,292,521 - 254,336,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,494,531 - 262,541,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,200,609 - 269,247,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,848,340 - 261,895,280 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,240,703 - 276,290,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,240,703 - 276,290,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,637,899 - 283,685,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,554,383 - 261,599,373 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,765,427 - 261,810,418 (+)NCBI
Celera1249,999,118 - 250,043,312 (+)NCBICelera
Cytogenetic Map1q55NCBI
Acsl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,477,086 - 17,524,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,477,113 - 17,524,539 (+)NCBIChiLan1.0ChiLan1.0
ACSL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,437,838 - 23,478,763 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,440,387 - 23,478,762 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,589,635 - 23,630,543 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02823,970,117 - 24,011,237 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2823,971,931 - 24,069,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,527,397 - 23,568,302 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,538,540 - 23,579,462 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,737,237 - 23,775,914 (+)NCBIUU_Cfam_GSD_1.0
Acsl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,569,123 - 22,610,342 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364862,967,522 - 2,991,154 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364862,952,379 - 2,992,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,777,130 - 122,828,052 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,777,135 - 122,828,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,689,844 - 133,751,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACSL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,259,546 - 105,311,500 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,257,429 - 105,311,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,462,251 - 66,514,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473734,038,518 - 34,091,661 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473734,038,610 - 34,091,579 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000003412   ⟹   ENSPPAP00000000729
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10112,407,161 - 112,457,892 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000003473   ⟹   ENSPPAP00000000737
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10112,425,689 - 112,456,876 (+)Ensembl
RefSeq Acc Id: XM_003825589   ⟹   XP_003825637
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28124,252,488 - 124,305,741 (+)NCBI
NHGRI_mPanPan110124,257,822 - 124,307,922 (+)NCBI
Mhudiblu_PPA_v010108,968,141 - 109,019,240 (+)NCBI
PanPan1.110112,407,161 - 112,457,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055092281   ⟹   XP_054948256
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28124,268,453 - 124,305,741 (+)NCBI
NHGRI_mPanPan110124,273,779 - 124,307,922 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003825637 (Get FASTA)   NCBI Sequence Viewer  
  XP_054948256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000729
  ENSPPAP00000000729.1
  ENSPPAP00000000737.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825637   ⟸   XM_003825589
- Peptide Label: isoform X1
- UniProtKB: A0A2R8Z7G2 (UniProtKB/TrEMBL),   A0A2R8Z7B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000000729   ⟸   ENSPPAT00000003412
RefSeq Acc Id: ENSPPAP00000000737   ⟸   ENSPPAT00000003473
RefSeq Acc Id: XP_054948256   ⟸   XM_055092281
- Peptide Label: isoform X2
Protein Domains
AMP-dependent synthetase/ligase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000002842 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000003412.1 UniProtKB/TrEMBL
  ENSPPAT00000003473.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
  LC-FACS_euk UniProtKB/TrEMBL
KEGG Report pps:100982029 UniProtKB/TrEMBL
NCBI Gene ACSL5 ENTREZGENE
PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE UniProtKB/TrEMBL
  LONG-CHAIN-FATTY-ACID--COA LIGASE 5 UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0A2R8Z7B9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z7G2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 ACSL5  acyl-CoA synthetase long chain family member 5    acyl-CoA synthetase long-chain family member 5  Symbol and/or name change 5135510 APPROVED