ELMOD3 (ELMO domain containing 3) - Rat Genome Database

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Gene: ELMOD3 (ELMO domain containing 3) Pan paniscus
Analyze
Symbol: ELMOD3
Name: ELMO domain containing 3
RGD ID: 12025835
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); cilium assembly (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH Autosomal Dominant Nonsyndromic Deafness 81 (ortholog); autosomal recessive nonsyndromic deafness 88 (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ELMO domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,991,659 - 41,028,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,994,392 - 41,031,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,407,326 - 85,444,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,958,874 - 86,994,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (ISO)
Golgi apparatus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
ELMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,991,659 - 41,028,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,994,392 - 41,031,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,407,326 - 85,444,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,958,874 - 86,994,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensemblpanpan1.1panPan2
ELMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,354,769 - 85,391,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,354,394 - 85,391,752 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,581,892 - 85,618,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,435,447 - 85,472,382 (+)NCBINCBI36Build 36hg18NCBI36
Build 34285,493,593 - 85,530,527NCBI
Celera285,409,846 - 85,447,061 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,478,667 - 85,515,684 (+)NCBIHuRef
CHM1_1285,511,554 - 85,548,621 (+)NCBICHM1_1
T2T-CHM13v2.0285,356,760 - 85,393,759 (+)NCBIT2T-CHM13v2.0
Elmod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,542,905 - 72,575,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,542,905 - 72,575,396 (-)EnsemblGRCm39 Ensembl
GRCm38672,565,922 - 72,598,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,565,922 - 72,598,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,515,921 - 72,548,336 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,495,436 - 72,527,851 (-)NCBIMGSCv36mm8
Celera674,664,110 - 74,696,606 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Elmod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,172,819 - 106,211,286 (-)NCBIGRCr8
mRatBN7.24104,614,665 - 104,653,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,614,676 - 104,653,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,993,517 - 110,032,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,768,639 - 105,807,263 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,382,429 - 104,420,830 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,422,256 - 100,465,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,422,252 - 100,465,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,192,607 - 165,237,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,866,419 - 106,099,850 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,110,901 - 106,344,331 (-)NCBI
Celera493,768,136 - 93,805,963 (-)NCBICelera
Cytogenetic Map4q32NCBI
Elmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,083,085 - 2,106,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,082,480 - 2,107,599 (-)NCBIChiLan1.0ChiLan1.0
ELMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,642,101 - 39,668,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,643,676 - 39,665,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,313,501 - 39,339,626 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,451,641 - 40,477,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,446,329 - 40,477,528 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,518,851 - 39,544,957 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,590,458 - 39,616,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,990,386 - 40,016,502 (-)NCBIUU_Cfam_GSD_1.0
Elmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,805,795 - 1,825,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,805,141 - 1,827,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,369,820 - 59,401,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,369,816 - 59,401,193 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,323,190 - 62,354,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,765,160 - 21,803,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,635,934 - 90,701,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,749,658 - 17,774,891 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,749,004 - 17,774,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003816588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003816589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024927588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024927589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024927590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034953462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034953464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034953465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034953466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034953467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004669946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000030451   ⟹   ENSPPAP00000007837
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030454   ⟹   ENSPPAP00000007840
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A86,959,080 - 86,994,897 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030462   ⟹   ENSPPAP00000007847
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A86,961,383 - 86,994,107 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030466   ⟹   ENSPPAP00000007850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A86,961,383 - 86,975,233 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030467   ⟹   ENSPPAP00000007852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A86,990,363 - 86,994,107 (+)Ensembl
RefSeq Acc Id: XM_003816588   ⟹   XP_003816636
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,588 (-)NCBI
NHGRI_mPanPan12A40,994,392 - 41,031,350 (-)NCBI
Mhudiblu_PPA_v02A85,407,328 - 85,444,298 (+)NCBI
PanPan1.12A86,958,957 - 86,994,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969636   ⟹   XP_008967884
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,028,588 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,031,350 (-)NCBI
Mhudiblu_PPA_v02A85,407,328 - 85,443,302 (+)NCBI
PanPan1.12A86,958,874 - 86,993,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969639   ⟹   XP_008967887
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,028,642 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,031,398 (-)NCBI
Mhudiblu_PPA_v02A85,407,328 - 85,444,298 (+)NCBI
PanPan1.12A86,958,994 - 86,994,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024927589   ⟹   XP_024783357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,636 (-)NCBI
NHGRI_mPanPan12A40,994,392 - 41,031,389 (-)NCBI
Mhudiblu_PPA_v02A85,407,340 - 85,444,297 (+)NCBI
PanPan1.12A86,958,957 - 86,994,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024927590   ⟹   XP_024783358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,662 (-)NCBI
NHGRI_mPanPan12A40,994,392 - 41,031,424 (-)NCBI
Mhudiblu_PPA_v02A85,407,328 - 85,444,297 (+)NCBI
PanPan1.12A86,958,957 - 86,994,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034953464   ⟹   XP_034809355
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,028,588 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,031,350 (-)NCBI
Mhudiblu_PPA_v02A85,407,328 - 85,443,302 (+)NCBI
RefSeq Acc Id: XM_034953465   ⟹   XP_034809356
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,028,636 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,031,389 (-)NCBI
Mhudiblu_PPA_v02A85,407,340 - 85,443,302 (+)NCBI
RefSeq Acc Id: XM_034953466   ⟹   XP_034809357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,027,790 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,030,552 (-)NCBI
Mhudiblu_PPA_v02A85,408,177 - 85,443,302 (+)NCBI
RefSeq Acc Id: XM_034953467   ⟹   XP_034809358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,027,600 (-)NCBI
NHGRI_mPanPan12A40,995,416 - 41,030,362 (-)NCBI
Mhudiblu_PPA_v02A85,408,318 - 85,443,302 (+)NCBI
RefSeq Acc Id: XM_057301279   ⟹   XP_057157262
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,605 (-)NCBI
NHGRI_mPanPan12A40,994,392 - 41,031,350 (-)NCBI
RefSeq Acc Id: XM_057301280   ⟹   XP_057157263
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,027,600 (-)NCBI
NHGRI_mPanPan12A40,994,392 - 41,030,362 (-)NCBI
RefSeq Acc Id: XM_063594825   ⟹   XP_063450895
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,992,654 - 41,028,603 (-)NCBI
RefSeq Acc Id: XM_063594827   ⟹   XP_063450897
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,622 (-)NCBI
RefSeq Acc Id: XM_063594828   ⟹   XP_063450898
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21240,991,659 - 41,028,599 (-)NCBI
RefSeq Acc Id: XP_008967884   ⟸   XM_008969636
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003816636   ⟸   XM_003816588
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL),   A0A2R8ZY34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967887   ⟸   XM_008969639
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024783357   ⟸   XM_024927589
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL),   A0A2R8ZY34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024783358   ⟸   XM_024927590
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL),   A0A2R8ZY34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034809355   ⟸   XM_034953464
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034809356   ⟸   XM_034953465
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034809357   ⟸   XM_034953466
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034809358   ⟸   XM_034953467
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000007850   ⟸   ENSPPAT00000030466
RefSeq Acc Id: ENSPPAP00000007852   ⟸   ENSPPAT00000030467
RefSeq Acc Id: ENSPPAP00000007847   ⟸   ENSPPAT00000030462
RefSeq Acc Id: ENSPPAP00000007840   ⟸   ENSPPAT00000030454
RefSeq Acc Id: ENSPPAP00000007837   ⟸   ENSPPAT00000030451
RefSeq Acc Id: XP_057157262   ⟸   XM_057301279
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157263   ⟸   XM_057301280
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450897   ⟸   XM_063594827
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450898   ⟸   XM_063594828
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZY26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450895   ⟸   XM_063594825
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTF8 (UniProtKB/TrEMBL)
Protein Domains
ELMO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030451.1 UniProtKB/TrEMBL
  ENSPPAT00000030454.1 UniProtKB/TrEMBL
  ENSPPAT00000030462.1 UniProtKB/TrEMBL
  ENSPPAT00000030466.1 UniProtKB/TrEMBL
  ENSPPAT00000030467.1 UniProtKB/TrEMBL
InterPro ELMO_dom UniProtKB/TrEMBL
KEGG Report pps:100981538 UniProtKB/TrEMBL
NCBI Gene ELMOD3 ENTREZGENE
PANTHER ENGULFMENT AND CELL MOTILITY UniProtKB/TrEMBL
  PTHR12771:SF2 UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/TrEMBL
PROSITE ELMO UniProtKB/TrEMBL
UniProt A0A2R8ZTF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZTG7_PANPA UniProtKB/TrEMBL
  A0A2R8ZY26 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZY34 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZY39_PANPA UniProtKB/TrEMBL