NAPB (NSF attachment protein beta) - Rat Genome Database

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Gene: NAPB (NSF attachment protein beta) Pan paniscus
Analyze
Symbol: NAPB
Name: NSF attachment protein beta
RGD ID: 11999238
Description: ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN protein-containing complex disassembly (ortholog); regulation of receptor internalization (ortholog); regulation of synaptic vesicle priming (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 107 (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,247,686 - 24,294,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12024,244,519 - 24,291,535 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,316,153 - 23,363,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,667,464 - 23,713,935 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,667,469 - 23,713,935 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NAPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,247,686 - 24,294,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12024,244,519 - 24,291,535 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,316,153 - 23,363,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,667,464 - 23,713,935 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,667,469 - 23,713,935 (-)Ensemblpanpan1.1panPan2
NAPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,374,522 - 23,421,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,374,519 - 23,421,519 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,355,159 - 23,402,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,303,165 - 23,350,081 (-)NCBINCBI36Build 36hg18NCBI36
Build 342023,303,165 - 23,350,081NCBI
Celera2023,428,529 - 23,475,530 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,316,796 - 23,363,800 (-)NCBIHuRef
CHM1_12023,355,618 - 23,402,617 (-)NCBICHM1_1
T2T-CHM13v2.02023,434,062 - 23,481,033 (-)NCBIT2T-CHM13v2.0
Napb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,535,905 - 148,574,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,535,905 - 148,574,387 (-)EnsemblGRCm39 Ensembl
GRCm382148,693,985 - 148,732,425 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,693,985 - 148,732,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv372148,520,393 - 148,558,156 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,386,098 - 148,423,861 (-)NCBIMGSCv36mm8
Celera2149,962,927 - 150,000,652 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.53NCBI
Napb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,585,394 - 156,632,418 (-)NCBIGRCr8
mRatBN7.23136,132,248 - 136,179,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3136,133,428 - 136,179,345 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3140,088,084 - 140,131,334 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,672,232 - 148,715,485 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,361,580 - 146,404,830 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03143,017,571 - 143,063,904 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3143,020,454 - 143,063,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,431,212 - 149,473,190 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,447,072 - 137,490,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3134,978,251 - 135,020,908 (-)NCBICelera
Cytogenetic Map3q41NCBI
Napb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,392,165 - 30,427,773 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,392,692 - 30,427,773 (-)NCBIChiLan1.0ChiLan1.0
NAPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124217,287 - 258,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24217,381 - 255,752 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24239,058 - 280,048 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024609,668 - 650,674 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24609,687 - 650,669 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124211,965 - 252,952 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024311,328 - 352,320 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024595,207 - 636,199 (+)NCBIUU_Cfam_GSD_1.0
Napb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640148,737,781 - 148,785,166 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,157,528 - 2,205,586 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,158,246 - 2,205,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,359,420 - 30,396,083 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,361,439 - 30,396,105 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,450,374 - 34,485,114 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,379,633 - 52,395,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660787,195,587 - 7,248,043 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Napb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474123,046,779 - 23,085,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474123,046,856 - 23,085,234 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065579   ⟹   ENSPPAP00000042649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2023,667,469 - 23,713,935 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000065580   ⟹   ENSPPAP00000042650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2023,667,469 - 23,689,722 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000065581   ⟹   ENSPPAP00000042651
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2023,670,325 - 23,713,818 (-)Ensembl
RefSeq Acc Id: XM_003829375   ⟹   XP_003829423
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22124,247,686 - 24,294,702 (-)NCBI
NHGRI_mPanPan12024,244,519 - 24,291,535 (-)NCBI
Mhudiblu_PPA_v02023,316,153 - 23,363,142 (-)NCBI
PanPan1.12023,667,464 - 23,713,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034947395   ⟹   XP_034803286
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22124,247,686 - 24,270,346 (-)NCBI
NHGRI_mPanPan12024,244,519 - 24,267,179 (-)NCBI
Mhudiblu_PPA_v02023,316,153 - 23,338,815 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003829423 (Get FASTA)   NCBI Sequence Viewer  
  XP_034803286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042649.1
  ENSPPAP00000042650.1
  ENSPPAP00000042651.1
Reference Protein Sequences
RefSeq Acc Id: XP_003829423   ⟸   XM_003829375
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034803286   ⟸   XM_034947395
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000042651   ⟸   ENSPPAT00000065581
RefSeq Acc Id: ENSPPAP00000042650   ⟸   ENSPPAT00000065580
RefSeq Acc Id: ENSPPAP00000042649   ⟸   ENSPPAT00000065579


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065579.1 UniProtKB/TrEMBL
  ENSPPAT00000065580.1 UniProtKB/TrEMBL
  ENSPPAT00000065581.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro NSF_attach UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100969368 UniProtKB/TrEMBL
NCBI Gene NAPB ENTREZGENE
PANTHER BETA-SOLUBLE NSF ATTACHMENT PROTEIN UniProtKB/TrEMBL
  PTHR13768 UniProtKB/TrEMBL
Pfam SNAP UniProtKB/TrEMBL
PRINTS NSFATTACHMNT UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A2R9CKY4_PANPA UniProtKB/TrEMBL
  A0A2R9CL04_PANPA UniProtKB/TrEMBL
  A0A2R9CL22_PANPA UniProtKB/TrEMBL