SLC15A1 (solute carrier family 15 member 1) - Rat Genome Database

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Gene: SLC15A1 (solute carrier family 15 member 1) Pan paniscus
Analyze
Symbol: SLC15A1
Name: solute carrier family 15 member 1
RGD ID: 11989995
Description: ENCODES a protein that exhibits channel inhibitor activity (ortholog); INVOLVED IN metanephric proximal tubule development (ortholog); negative regulation of amino acid transport (ortholog); oligopeptide transport (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); holoprosencephaly (ortholog); FOUND IN apical plasma membrane (inferred); brush border (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214100,208,416 - 100,280,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11398,879,618 - 98,947,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01379,855,805 - 79,902,215 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11398,998,769 - 99,040,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1398,998,894 - 99,065,008 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC15A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214100,208,416 - 100,280,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11398,879,618 - 98,947,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01379,855,805 - 79,902,215 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11398,998,769 - 99,040,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1398,998,894 - 99,065,008 (-)Ensemblpanpan1.1panPan2
SLC15A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381398,683,801 - 98,752,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1398,683,801 - 98,752,672 (-)EnsemblGRCh38hg38GRCh38
GRCh371399,336,055 - 99,404,926 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,134,057 - 98,202,909 (-)NCBINCBI36Build 36hg18NCBI36
Build 341398,134,056 - 98,202,909NCBI
Celera1380,179,729 - 80,248,593 (-)NCBICelera
Cytogenetic Map13q32.2-q32.3NCBI
HuRef1379,930,271 - 79,998,840 (-)NCBIHuRef
CHM1_11399,305,811 - 99,374,685 (-)NCBICHM1_1
T2T-CHM13v2.01397,893,752 - 97,962,601 (-)NCBIT2T-CHM13v2.0
Slc15a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914121,697,033 - 121,742,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14121,697,033 - 121,742,664 (-)EnsemblGRCm39 Ensembl
GRCm3814121,459,621 - 121,505,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,459,621 - 121,505,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714121,858,843 - 121,904,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614120,594,799 - 120,640,433 (-)NCBIMGSCv36mm8
Celera14120,015,509 - 120,060,682 (-)NCBICelera
Cytogenetic Map14E5NCBI
cM Map1465.26NCBI
Slc15a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815104,944,461 - 104,991,316 (-)NCBIGRCr8
mRatBN7.21598,537,641 - 98,582,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1598,537,641 - 98,582,545 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15102,471,246 - 102,515,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015103,572,123 - 103,616,870 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015100,499,818 - 100,544,563 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015106,800,081 - 106,844,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15106,800,081 - 106,844,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015110,194,618 - 110,238,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415106,549,586 - 106,592,594 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115106,565,875 - 106,608,374 (-)NCBI
Celera1597,321,467 - 97,366,085 (-)NCBICelera
Cytogenetic Map15q24NCBI
Slc15a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,798,927 - 11,857,982 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,799,370 - 11,856,854 (+)NCBIChiLan1.0ChiLan1.0
SLC15A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12248,777,627 - 48,827,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2248,777,630 - 48,827,533 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2248,560,003 - 48,609,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02249,220,704 - 49,270,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2249,220,707 - 49,270,801 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12248,870,251 - 48,919,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02248,905,695 - 48,955,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02248,941,445 - 48,991,309 (-)NCBIUU_Cfam_GSD_1.0
Slc15a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,235,002 - 184,283,235 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647211,669,206 - 11,716,303 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647211,669,206 - 11,716,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,652,193 - 67,710,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,652,808 - 67,690,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,889,779 - 74,924,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,344,653 - 77,413,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl377,345,567 - 77,383,715 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604633,834,919 - 33,873,568 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc15a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479312,348,819 - 12,394,497 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479312,348,356 - 12,393,909 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000053322   ⟹   ENSPPAP00000030460
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1398,998,894 - 99,065,008 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000053332   ⟹   ENSPPAP00000030470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1399,035,217 - 99,040,646 (-)Ensembl
RefSeq Acc Id: XM_057299610   ⟹   XP_057155593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v214100,208,416 - 100,280,255 (-)NCBI
NHGRI_mPanPan11398,879,618 - 98,947,314 (-)NCBI
Protein Sequences
Protein RefSeqs XP_057155593 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000030460.1
  ENSPPAP00000030470.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000030460   ⟸   ENSPPAT00000053322
RefSeq Acc Id: ENSPPAP00000030470   ⟸   ENSPPAT00000053332
RefSeq Acc Id: XP_057155593   ⟸   XM_057299610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053322.1 UniProtKB/TrEMBL
  ENSPPAT00000053332.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/TrEMBL
  Oligopep_transport UniProtKB/TrEMBL
  POT_fam UniProtKB/TrEMBL
  PTR2_symporter_CS UniProtKB/TrEMBL
NCBI Gene SLC15A1 ENTREZGENE
PANTHER PTHR11654 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 15 MEMBER 1 UniProtKB/TrEMBL
Pfam PTR2 UniProtKB/TrEMBL
PROSITE PTR2_1 UniProtKB/TrEMBL
  PTR2_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A2R9BLE0_PANPA UniProtKB/TrEMBL
  A0A2R9BLF1_PANPA UniProtKB/TrEMBL