COL8A1 (collagen type VIII alpha 1 chain)

Gene: COL8A1 (collagen type VIII alpha 1 chain) Pan paniscus

Analyze

Symbol:

COL8A1

Name:

collagen type VIII alpha 1 chain

RGD ID:

11974023

Description:

INVOLVED IN camera-type eye morphogenesis (ortholog); endothelial cell proliferation (ortholog); positive regulation of cell-substrate adhesion (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Congenital Abnormalities (ortholog); diastolic heart failure (ortholog); genetic disease (ortholog); FOUND IN extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collagen alpha-1(VIII) chain

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	97,589,413 - 97,749,735 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	96,732,445 - 96,892,726 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	103,416,557 - 103,573,617 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	103,521,159 - 103,573,617 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Congenital Abnormalities (ISO)

diastolic heart failure (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye morphogenesis (IEA,ISO)

endodermal cell differentiation (IEA)

endothelial cell proliferation (IEA,ISO)

positive regulation of cell-substrate adhesion (IEA,ISO)

Cellular Component

extracellular region (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

COL8A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	97,589,413 - 97,749,735 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	96,732,445 - 96,892,726 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	103,416,557 - 103,573,617 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	103,521,159 - 103,573,617 (+)	Ensembl	panpan1.1		panPan2

COL8A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	99,638,594 - 99,799,217 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	99,638,475 - 99,799,226 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	99,357,438 - 99,518,061 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	100,840,144 - 100,997,848 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	100,840,143 - 100,997,848	NCBI
Celera	3	97,746,575 - 97,904,287 (+)	NCBI		Celera
Cytogenetic Map	3	q12.1	NCBI
HuRef	3	96,725,773 - 96,884,050 (+)	NCBI		HuRef
CHM1_1	3	99,320,440 - 99,478,624 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	102,343,632 - 102,504,274 (+)	NCBI		T2T-CHM13v2.0

Col8a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	57,444,619 - 57,575,100 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	57,444,621 - 57,575,100 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	57,624,256 - 57,754,737 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	57,624,258 - 57,754,737 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	57,624,369 - 57,754,850 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	57,548,056 - 57,553,783 (-)	NCBI		MGSCv36	mm8
Celera	16	57,949,273 - 58,079,512 (-)	NCBI		Celera
Cytogenetic Map	16	C1.1	NCBI
cM Map	16	34.22	NCBI

Col8a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	56,245,998 - 56,378,586 (+)	NCBI		GRCr8
mRatBN7.2	11	42,776,851 - 42,906,432 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	42,777,628 - 42,906,424 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	51,533,937 - 51,662,714 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	44,195,524 - 44,324,293 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	43,324,116 - 43,452,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	44,877,690 - 45,006,203 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	44,877,859 - 45,007,891 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	48,073,158 - 48,201,421 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	43,604,994 - 43,733,870 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	43,785,922 - 43,791,642 (+)	NCBI
Celera	11	42,573,892 - 42,702,340 (+)	NCBI		Celera
Cytogenetic Map	11	q12	NCBI

Col8a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	1,187,550 - 1,335,794 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	1,187,550 - 1,335,794 (+)	NCBI	ChiLan1.0	ChiLan1.0

COL8A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	6,285,742 - 6,428,172 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	6,285,415 - 6,425,414 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1

Col8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	150,545,175 - 150,692,760 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936630	3,443,068 - 3,590,516 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936630	3,443,085 - 3,590,430 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL8A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	159,216,144 - 159,374,576 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	159,216,138 - 159,374,718 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	169,086,122 - 169,094,141 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL8A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	81,094,127 - 81,242,801 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	81,091,493 - 81,242,763 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	85,334,932 - 85,484,882 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col8a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624789	12,962,144 - 13,130,492 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003821907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003821908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008975388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008975389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057301840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004670640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000056555 ⟹ ENSPPAP00000033679

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	103,521,159 - 103,573,617 (+)	Ensembl

RefSeq Acc Id:

XM_003821907 ⟹ XP_003821955

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI
NHGRI_mPanPan1	3	97,589,413 - 97,749,735 (+)	NCBI
Mhudiblu_PPA_v0	3	96,732,471 - 96,892,726 (+)	NCBI
PanPan1.1	3	103,416,678 - 103,573,617 (+)	NCBI

Sequence:

show sequence

ATCACAGCCCTTCCCCGATCCTCTCCGTGGGAGCCAGCGAGCCTCTCTCCCTGATCTTACGTGC
TCAAGGGAGTTCACACGTTCACCAACTCACCCTTGAAGTCATCTCAAGAACAAAAGACAACTGA
AAGAAGCTGTTGTGAAAGCAGAGTAGCATCTGCTGAAGAGACAGAAACCAGCCCCAGAGGTGTC
ACATGAAGGCACCAGCAAGGACATTGGTCTTTGATTTGATTCAGCAGTCCTGTCAAGTATAAAT
GTGATGGCTGTGCTGCCTGGCCCTCTGCAGCTGCTGGGAGTGCTGCTTACCATTTCCCTGAGTT
CCATCAGGCTCATTCAGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAAATTCCTCC
TCAGATGCCACCACAAATTCCACAATACCAGCCCCTGGGTCAGCAAGTACCTCACATGCCTTTG
GCCAAAGATGGCCTTGTCATGGGCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCAC
ACCTACCCCAATATATGAAGGAAATTCAACCGGCGCCAAGAATGGGCAAGGAAGCCGTACCCAA
GAAAGGCAAAGAAATACCATTAGCCAGTTTACGAGGGGAACAAGGTCCCCGTGGAGAGCCTGGC
CCAAGAGGACCACCTGGGCCCCCTGGTTTGCCAGGTCATGGGATACCTGGAATTAAAGGAAAAC
CAGGGCCACAGGGATATCCAGGAGTTGGAAAGCCAGGTATGCCTGGAATGCCAGGGAAGCCAGG
AGCCATGGGCATGCCTGGGGCAAAAGGAGAAATTGGACAGAAAGGGGAAATTGGGCCTATGGGG
ATCCCAGGACCACAAGGACCTCCAGGGCCTCATGGACTTCCTGGCATTGGGAAGCCAGGTGGGC
CAGGGTTACCAGGGCAACCAGGACCAAAGGGTGATCGAGGACCCAAAGGACTACCAGGACCTCA
AGGCCTTCGGGGTCCTAAAGGAGACAAGGGCTTCGGGATGCCAGGTGCGCCAGGTGTAAAGGGG
CCTCCAGGGATGCACGGCCCTCCCGGCCCTGTTGGACTGCCAGGAGTGGGCAAACCAGGAGTGA
CAGGCTTCCCTGGGCCCCAGGGCCCCCTGGGAAAGCCAGGGGCTCCAGGAGAACCCGGGCCACA
AGGCCCTATTGGGGTACCAGGGGTTCAAGGACCTCCTGGGATACCCGGAATTGGAAAGCCAGGC
CAGGATGGGATCCCAGGCCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGGC
TACCAGGACCCCCAGGCCTTCCAGGGATTGGGAAACCAGGCTTCCCAGGACCCAAAGGTGACCG
GGGCATGGGAGGTGTTCCTGGGGCTCTTGGACCAAGAGGGGAGAAAGGACCAATAGGTGCCCCA
GGAATAGGGGGTCCTCCAGGAGAGCCAGGCCTGCCTGGAATCCCAGGTCCTATGGGCCCTCCAG
GTGCTATTGGTTTTCCTGGACCCAAAGGAGAAGGTGGGATTGTAGGGCCACAGGGGCCACCAGG
TCCCAAGGGTGAGCCAGGGCTTCAAGGCTTCCCAGGAAAGCCAGGTTTCCTTGGTGAAGTAGGG
CCTCCTGGCATGAGGGGTTTGCCAGGTCCCATAGGGCCCAAGGGGGAAGCTGGGCAAAAAGGTG
TACCAGGACTCCCTGGTGTTCCAGGGCTTCTCGGACCTAAGGGAGAGCCAGGAATCCCAGGGGA
TCAGGGTTTACAGGGCCCCCCAGGTATCCCAGGGATTGGGGGCCCTAGTGGCCCCATTGGACCA
CCTGGGATTCCAGGCCCCAAAGGGGAGCCGGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTATAG
GGAAACCCGGAGTGGCAGGACTTCATGGCCCCCCAGGGAAGCCTGGTGCCCTTGGTCCTCAAGG
CCAGCCTGGCCTTCCAGGACCCCCAGGCCCTCCAGGACCTCCAGGACCCCCAGCTGTGATGCCC
CCTACACCACCACCCCAGGGAGAGTATCTGCCAGATATGGGGCTGGGAATTGATGGCGTGAAAC
CCCCCCATGCCTACGGGGCTAAGAAAGGCAAGAATGGAGGGCCAGCCTATGAGATGCCTGCATT
TACCGCCGAGCTAACCGCACCTTTCCCACCGGTGGGGGCCCCAGTGAAGTTTGACAAACTGCTG
TATAACGGCAGACAGAACTACAACCCGCAGACGGGCATCTTCACCTGTGAGGTCCCTGGTGTCT
ACTACTTTGCATACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGCTCTATTCAAGAACAA
CGAGCCCGTGATGTACACGTATGACGAGTACAAAAAGGGCTTCCTGGACCAGGCATCTGGGAGT
GCAGTGCTGCTGCTCAGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCAGAACAGGCTGCAG
GACTGTATGCCGGGCAGTATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAAAA
ACAAAAAACAAAAACAAAGAAAAGAAAGAGATTTTATAGAAGAAAATGACACACCAAAAAATCC
AAATGAAAAACATAATTGCTTCAAAACATTTATACAGTTGGAAAGTTATATGTAAGTGAAAATT
TGGACCATCGTGTACAAATAAAAACTAAGATGCATGTTTAATACTCCACACAGCAGCCTGTAAT
TGCGAATGATGGGATAGATTTATGTATCAAGTACTGACACTTGGTTGTACCCACTGGAATCATA
TTAGCTGTTTTATGTTATATGCTTCCACAATAACCTGCTTATTCAGATCAGTCAAAATATATCA
GTATGAAAGATCATAGCTAATGAAAGGCACTCACTCATATTGTTTACTTTAAAATATTTATAAA
TATGCCTTAAAGAAATACAAATGATAACAATTACATACCGTATTTACTTGCTTAATTTCCTCTG
TATTTGTGTAGATACTTTGACATGGAATATATGGTGGGGAGACCCGTAGTGTTACCGCCCCAGT
GGGAGGGGGCCCTGGGGACCCTGGTAATGCTTTAGTCAAAGGGATATCTCTCTTGTATCAGAGG
CTGTGTCTTTTAGTAACAGGAGTCCTCGTCAGAATTGCGTGTCTGTTGTCTCTAAAAGAATGGG
TGAACCAATTGGCCTTTGTGAATTTATTCAGTGCCTTCTCTGTACCAAGCACTGGGTAAGGCAC
TTTTGTGGAGCATTAGACAGTAACCCTCAAGGAGCTAGAGAACCGGATGGGAGACATGAGCAGT
AATTAACTCACTTGTTCCCCAGAGTTTCTATTTGTTTTGATTTTCTTTTTCTGTGACTTATTTT
CCTATTTTCTTTCCTCCATGTAATTTTCACTATGGCCCAACTAATATAAACACCTGGAAATTAC
AAGGAAAAAAAACTCTTCCTCTAATAACTTTCCAAATTTGTGGAATATTTATTTGTAATAGCAG
TTATCAGTTATGCTTATATAGCATTAAAAATTCTCCTCCTTTGACTACACACACAA

hide sequence

RefSeq Acc Id:

XM_008975388 ⟹ XP_008973636

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI
NHGRI_mPanPan1	3	97,589,413 - 97,749,716 (+)	NCBI
Mhudiblu_PPA_v0	3	96,732,471 - 96,890,928 (+)	NCBI
PanPan1.1	3	103,416,693 - 103,573,617 (+)	NCBI

Sequence:

show sequence

CGATCCTCTCCGTGGGAGCCAGCGAGCCTCTCTCCCTGATCTTACGTGCTCAAGGGAGTTCACA
CGTTCACCAACTCACCCTTGAAGTCATCTCAAGAACAAAAGACAACTGAAAGAAGCTGTTGTGA
AAGCAGAGTAGCATCTGCTGAAGAGACAGAAACCAGCCCCAGAGGTGTCACATGAAGGCACCAG
CAAGGACATTGGTCTTTGATTTGATTCAGCAGTCCTGTCAAGTATAAATGTGATGGCTGTGCTG
CCTGGCCCTCTGCAGCTGCTGGGAGTGCTGCTTACCATTTCCCTGAGTTCCATCAGGCTCATTC
AGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAAATTCCTCCTCAGATGCCACCACA
AATTCCACAATACCAGCCCCTGGGTCAGCAAGTACCTCACATGCCTTTGGCCAAAGATGGCCTT
GTCATGGGCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCACACCTACCCCAATATA
TGAAGGAAATTCAACCGGCGCCAAGAATGGGCAAGGAAGCCGTACCCAAGAAAGGCAAAGTAGA
AATACCATTAGCCAGTTTACGAGGGGAACAAGGTCCCCGTGGAGAGCCTGGCCCAAGAGGACCA
CCTGGGCCCCCTGGTTTGCCAGGTCATGGGATACCTGGAATTAAAGGAAAACCAGGGCCACAGG
GATATCCAGGAGTTGGAAAGCCAGGTATGCCTGGAATGCCAGGGAAGCCAGGAGCCATGGGCAT
GCCTGGGGCAAAAGGAGAAATTGGACAGAAAGGGGAAATTGGGCCTATGGGGATCCCAGGACCA
CAAGGACCTCCAGGGCCTCATGGACTTCCTGGCATTGGGAAGCCAGGTGGGCCAGGGTTACCAG
GGCAACCAGGACCAAAGGGTGATCGAGGACCCAAAGGACTACCAGGACCTCAAGGCCTTCGGGG
TCCTAAAGGAGACAAGGGCTTCGGGATGCCAGGTGCGCCAGGTGTAAAGGGGCCTCCAGGGATG
CACGGCCCTCCCGGCCCTGTTGGACTGCCAGGAGTGGGCAAACCAGGAGTGACAGGCTTCCCTG
GGCCCCAGGGCCCCCTGGGAAAGCCAGGGGCTCCAGGAGAACCCGGGCCACAAGGCCCTATTGG
GGTACCAGGGGTTCAAGGACCTCCTGGGATACCCGGAATTGGAAAGCCAGGCCAGGATGGGATC
CCAGGCCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGGCTACCAGGACCCC
CAGGCCTTCCAGGGATTGGGAAACCAGGCTTCCCAGGACCCAAAGGTGACCGGGGCATGGGAGG
TGTTCCTGGGGCTCTTGGACCAAGAGGGGAGAAAGGACCAATAGGTGCCCCAGGAATAGGGGGT
CCTCCAGGAGAGCCAGGCCTGCCTGGAATCCCAGGTCCTATGGGCCCTCCAGGTGCTATTGGTT
TTCCTGGACCCAAAGGAGAAGGTGGGATTGTAGGGCCACAGGGGCCACCAGGTCCCAAGGGTGA
GCCAGGGCTTCAAGGCTTCCCAGGAAAGCCAGGTTTCCTTGGTGAAGTAGGGCCTCCTGGCATG
AGGGGTTTGCCAGGTCCCATAGGGCCCAAGGGGGAAGCTGGGCAAAAAGGTGTACCAGGACTCC
CTGGTGTTCCAGGGCTTCTCGGACCTAAGGGAGAGCCAGGAATCCCAGGGGATCAGGGTTTACA
GGGCCCCCCAGGTATCCCAGGGATTGGGGGCCCTAGTGGCCCCATTGGACCACCTGGGATTCCA
GGCCCCAAAGGGGAGCCGGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTATAGGGAAACCCGGAG
TGGCAGGACTTCATGGCCCCCCAGGGAAGCCTGGTGCCCTTGGTCCTCAAGGCCAGCCTGGCCT
TCCAGGACCCCCAGGCCCTCCAGGACCTCCAGGACCCCCAGCTGTGATGCCCCCTACACCACCA
CCCCAGGGAGAGTATCTGCCAGATATGGGGCTGGGAATTGATGGCGTGAAACCCCCCCATGCCT
ACGGGGCTAAGAAAGGCAAGAATGGAGGGCCAGCCTATGAGATGCCTGCATTTACCGCCGAGCT
AACCGCACCTTTCCCACCGGTGGGGGCCCCAGTGAAGTTTGACAAACTGCTGTATAACGGCAGA
CAGAACTACAACCCGCAGACGGGCATCTTCACCTGTGAGGTCCCTGGTGTCTACTACTTTGCAT
ACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGCTCTATTCAAGAACAACGAGCCCGTGAT
GTACACGTATGACGAGTACAAAAAGGGCTTCCTGGACCAGGCATCTGGGAGTGCAGTGCTGCTG
CTCAGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCAGAACAGGCTGCAGGACTGTATGCCG
GGCAGTATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAAAAACAAAAAACAAA
AACAAAGAAAAGAAAGAGATTTTATAGAAGAAAATGACACACCAAAAAATCCAAATGAAAAACA
TAATTGCTTCAAAACATTTATACAGTTGGAAAGTTATATGTAAGTGAAAATTTGGACCATCGTG
TACAAATAAAAACTAAGATGCATGTTTAATACTCCACACAGCAGCCTGTAATTGCGAATGATGG
GATAGATTTATGTATCAAGTACTGACACTTGGTTGTACCCACTGGAATCATATTAGCTGTTTTA
TGTTATATGCTTCCACAATAACCTGCTTATTCAGATCAGTCAAAATATATCAGTATGAAAGATC
ATAGCTAATGAAAGGCACTCACTCATATTGTTTACTTTAAAATATTTATAAATATGCCTTAAAG
AAATACAAATGATAACAATTACATACCGTATTTACTTGCTTAATTTCCTCTGTATTTGTGTAGA
TACTTTGACATGGAATATATGGTGGGGAGACCCGTAGTGTTACCGCCCCAGTGGGAGGGGGCCC
TGGGGACCCTGGTAATGCTTTAGTCAAAGGGATATCTCTCTTGTATCAGAGGCTGTGTCTTTTA
GTAACAGGAGTCCTCGTCAGAATTGCGTGTCTGTTGTCTCTAAAAGAATGGGTGAACCAATTGG
CCTTTGTGAATTTATTCAGTGCCTTCTCTGTACCAAGCACTGGGTAAGGCACTTTTGTGGAGCA
TTAGACAGTAACCCTCAAGGAGCTAGAGAACCGGATGGGAGACATGAGCAGTAATTAACTCACT
TGTTCCCCAGAGTTTCTATTTGTTTTGATTTTCTTTTTCTGTGACTTATTTTCCTATTTTCTTT
CCTCCATGTAATTTTCACTATGGCCCAACTAATATAAACACCTGGAAATTACAAGGAAAAAAAA
CTCTTCCTCTAATAACTTTCCAAATTTGTGGAATATTTATTTGTAATAGCAGTTATCAGTTATG
CTTATATAGCATTAAAAATTCTCCTCCTTTGACTACACACACAA

hide sequence

RefSeq Acc Id:

XM_057301840 ⟹ XP_057157823

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,462 - 97,744,951 (+)	NCBI
NHGRI_mPanPan1	3	97,589,419 - 97,749,735 (+)	NCBI

RefSeq Acc Id:

XM_063602484 ⟹ XP_063458554

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI

RefSeq Acc Id:

XM_063602485 ⟹ XP_063458555

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,477 - 97,744,951 (+)	NCBI

RefSeq Acc Id:

XM_063602486 ⟹ XP_063458556

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,510 - 97,744,951 (+)	NCBI

RefSeq Acc Id:

XM_063602487 ⟹ XP_063458557

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,157 - 97,744,951 (+)	NCBI

RefSeq Acc Id:

XM_063602488 ⟹ XP_063458558

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	97,584,510 - 97,744,951 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003821955	(Get FASTA)	NCBI Sequence Viewer
	XP_008973636	(Get FASTA)	NCBI Sequence Viewer
	XP_057157823	(Get FASTA)	NCBI Sequence Viewer
	XP_063458554	(Get FASTA)	NCBI Sequence Viewer
	XP_063458555	(Get FASTA)	NCBI Sequence Viewer
	XP_063458556	(Get FASTA)	NCBI Sequence Viewer
	XP_063458557	(Get FASTA)	NCBI Sequence Viewer
	XP_063458558	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000033679.1

RefSeq Acc Id:	XP_008973636 ⟸ XM_008975388
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9C581 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLA KDGLVMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKVEIPLASLRGEQGPRGEPG PRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMG IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKG PPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPG QDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAP GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVG PPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGP PGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMP PTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFDKLL YNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGS AVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM hide sequence

RefSeq Acc Id:

XP_003821955 ⟸ XM_003821907

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLA
KDGLVMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGP
RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGI
PGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGP
PGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQ
DGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPG
IGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGP
PGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPP
GIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPP
TPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFDKLLY
NGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSA
VLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM

hide sequence

RefSeq Acc Id:

ENSPPAP00000033679 ⟸ ENSPPAT00000056555

RefSeq Acc Id:	XP_057157823 ⟸ XM_057301840
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063458554 ⟸ XM_063602484
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063458557 ⟸ XM_063602487
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063458555 ⟸ XM_063602485
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063458556 ⟸ XM_063602486
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063458558 ⟸ XM_063602488
- Peptide Label:	isoform X2

Protein Domains

C1q

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039701	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000056555.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
InterPro	C1q_dom	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/TrEMBL
NCBI Gene	COL8A1	ENTREZGENE
PANTHER	C1Q DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER	UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
PRINTS	COMPLEMNTC1Q	UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/TrEMBL
SMART	C1Q	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/TrEMBL
UniProt	A0A2R9C581	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)