BCAT1 (branched chain amino acid transaminase 1) - Rat Genome Database

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Gene: BCAT1 (branched chain amino acid transaminase 1) Pan paniscus
Analyze
Symbol: BCAT1
Name: branched chain amino acid transaminase 1
RGD ID: 11967817
Description: ENCODES a protein that exhibits branched-chain-amino-acid transaminase activity (ortholog); identical protein binding (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Brain Injuries (ortholog); cholestasis (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: branched-chain-amino-acid aminotransferase, cytosolic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,867,317 - 72,003,917 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,863,725 - 72,000,314 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01261,364,154 - 61,500,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,978,116 - 64,114,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BCAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,867,317 - 72,003,917 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,863,725 - 72,000,314 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01261,364,154 - 61,500,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,978,116 - 64,114,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensemblpanpan1.1panPan2
BCAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,810,024 - 24,949,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,810,024 - 24,949,101 (-)EnsemblGRCh38hg38GRCh38
GRCh371224,962,958 - 25,102,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,855,545 - 24,993,499 (-)NCBINCBI36Build 36hg18NCBI36
Build 341224,855,561 - 24,993,499NCBI
Celera1230,109,823 - 30,249,287 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1224,732,841 - 24,872,358 (-)NCBIHuRef
CHM1_11224,928,106 - 25,067,454 (-)NCBICHM1_1
T2T-CHM13v2.01224,679,997 - 24,819,416 (-)NCBIT2T-CHM13v2.0
Bcat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396144,939,561 - 145,021,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6144,939,561 - 145,021,910 (-)EnsemblGRCm39 Ensembl
GRCm386144,993,835 - 145,076,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6144,993,835 - 145,076,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv376144,942,355 - 145,024,677 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366144,956,312 - 145,033,242 (-)NCBIMGSCv36mm8
Celera6148,047,506 - 148,145,066 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.27NCBI
Bcat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,695,662 - 179,777,973 (-)NCBIGRCr8
mRatBN7.24177,964,834 - 178,046,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4177,964,834 - 178,046,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,266,200 - 184,349,150 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,050,703 - 180,133,655 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,671,128 - 178,754,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,259,305 - 179,340,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,259,308 - 179,339,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,463,299 - 243,491,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04243,444,839 - 243,460,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,641,517 - 182,692,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14182,886,640 - 182,938,041 (-)NCBI
Celera4166,483,269 - 166,533,125 (-)NCBICelera
Cytogenetic Map4q44NCBI
Bcat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541319,981,328 - 20,087,638 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541319,975,395 - 20,087,656 (-)NCBIChiLan1.0ChiLan1.0
BCAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,536,297 - 22,643,350 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2722,535,254 - 22,636,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2723,725,637 - 23,832,733 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02722,769,835 - 22,843,576 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,735,227 - 22,841,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,584,192 - 22,657,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,569,213 - 22,676,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02723,897,853 - 24,005,177 (-)NCBIUU_Cfam_GSD_1.0
Bcat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494584,462,896 - 84,532,986 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365482,385,756 - 2,454,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl548,814,313 - 48,925,973 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1548,814,212 - 48,925,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2552,534,770 - 52,624,453 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11124,578,760 - 24,709,541 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1124,579,487 - 24,709,132 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606910,417,680 - 10,554,451 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475214,106,884 - 14,164,064 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475214,074,701 - 14,166,075 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000034977   ⟹   ENSPPAP00000012313
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034979   ⟹   ENSPPAP00000012315
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034981   ⟹   ENSPPAP00000012317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1263,978,727 - 64,107,463 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034982   ⟹   ENSPPAP00000012318
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1264,024,593 - 64,107,463 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034985   ⟹   ENSPPAP00000012321
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1264,024,599 - 64,107,463 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034992   ⟹   ENSPPAP00000012328
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1264,025,772 - 64,095,742 (+)Ensembl
RefSeq Acc Id: XM_003828874   ⟹   XP_003828922
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21071,867,317 - 72,003,917 (+)NCBI
NHGRI_mPanPan11271,863,725 - 72,000,314 (+)NCBI
Mhudiblu_PPA_v01261,364,154 - 61,500,827 (+)NCBI
PanPan1.11263,978,116 - 64,114,110 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003828876   ⟹   XP_003828924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21071,913,296 - 72,003,917 (+)NCBI
NHGRI_mPanPan11271,909,849 - 72,000,314 (+)NCBI
Mhudiblu_PPA_v01261,410,098 - 61,500,827 (+)NCBI
PanPan1.11264,024,593 - 64,114,110 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936166   ⟹   XP_034792057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21071,914,653 - 72,003,917 (+)NCBI
NHGRI_mPanPan11271,910,834 - 72,000,314 (+)NCBI
Mhudiblu_PPA_v01261,411,350 - 61,500,827 (+)NCBI
RefSeq Acc Id: XP_003828922   ⟸   XM_003828874
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A4U2 (UniProtKB/TrEMBL),   A0A2R9A4V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003828924   ⟸   XM_003828876
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A4V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034792057   ⟸   XM_034936166
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AA55 (UniProtKB/TrEMBL),   A0A2R9A4V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000012328   ⟸   ENSPPAT00000034992
RefSeq Acc Id: ENSPPAP00000012321   ⟸   ENSPPAT00000034985
RefSeq Acc Id: ENSPPAP00000012317   ⟸   ENSPPAT00000034981
RefSeq Acc Id: ENSPPAP00000012318   ⟸   ENSPPAT00000034982
RefSeq Acc Id: ENSPPAP00000012315   ⟸   ENSPPAT00000034979
RefSeq Acc Id: ENSPPAP00000012313   ⟸   ENSPPAT00000034977


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029336 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034977.1 UniProtKB/TrEMBL
  ENSPPAT00000034979.1 UniProtKB/TrEMBL
  ENSPPAT00000034981.1 UniProtKB/TrEMBL
  ENSPPAT00000034982.1 UniProtKB/TrEMBL
  ENSPPAT00000034985.1 UniProtKB/TrEMBL
  ENSPPAT00000034992.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.10.10 UniProtKB/TrEMBL
  3.30.470.10 UniProtKB/TrEMBL
InterPro Aminotrans_IV UniProtKB/TrEMBL
  Aminotrans_IV_CS UniProtKB/TrEMBL
  Aminotransferase-like UniProtKB/TrEMBL
  B_amino_transII UniProtKB/TrEMBL
  BCAT-like_C UniProtKB/TrEMBL
  BCAT-like_N UniProtKB/TrEMBL
  BCAT_family UniProtKB/TrEMBL
KEGG Report pps:100994347 UniProtKB/TrEMBL
NCBI Gene BCAT1 ENTREZGENE
PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, CYTOSOLIC UniProtKB/TrEMBL
  PTHR11825 UniProtKB/TrEMBL
Pfam Aminotran_4 UniProtKB/TrEMBL
PIRSF BCAT1 UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF56752 UniProtKB/TrEMBL
UniProt A0A2R9A4U1_PANPA UniProtKB/TrEMBL
  A0A2R9A4U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A4U7_PANPA UniProtKB/TrEMBL
  A0A2R9A4V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A9K4_PANPA UniProtKB/TrEMBL
  A0A2R9AA55 ENTREZGENE, UniProtKB/TrEMBL