KCNMB1 (potassium calcium-activated channel subfamily M regulatory beta subunit 1) - Rat Genome Database

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Gene: KCNMB1 (potassium calcium-activated channel subfamily M regulatory beta subunit 1) Pan paniscus
Analyze
Symbol: KCNMB1
Name: potassium calcium-activated channel subfamily M regulatory beta subunit 1
RGD ID: 11930029
Description: ENCODES a protein that exhibits potassium channel regulator activity (ortholog); INVOLVED IN cellular response to bile acid (ortholog); cellular response to ethanol (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH Diastolic Hypertension, Resistance to (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); voltage-gated potassium channel complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-activated potassium channel subunit beta-1; potassium large conductance calcium-activated channel, subfamily M, beta member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,531,886 - 165,545,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,669,031 - 163,685,000 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,712,588 - 165,747,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,495,762 - 172,507,318 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,495,762 - 172,507,318 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNMB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,531,886 - 165,545,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,669,031 - 163,685,000 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,712,588 - 165,747,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,495,762 - 172,507,318 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,495,762 - 172,507,318 (-)Ensemblpanpan1.1panPan2
KCNMB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,374,671 - 170,389,367 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,374,671 - 170,389,634 (-)EnsemblGRCh38hg38GRCh38
GRCh375169,801,675 - 169,816,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365169,737,745 - 169,749,216 (-)NCBINCBI36Build 36hg18NCBI36
Build 345169,737,744 - 169,749,216NCBI
Celera5165,837,099 - 165,848,570 (-)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,904,047 - 164,915,563 (-)NCBIHuRef
CHM1_15169,238,046 - 169,249,557 (-)NCBICHM1_1
T2T-CHM13v2.05170,913,506 - 170,928,202 (-)NCBIT2T-CHM13v2.0
Kcnmb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,912,955 - 33,923,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,913,013 - 33,923,641 (+)EnsemblGRCm39 Ensembl
GRCm381133,962,955 - 33,973,641 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,963,013 - 33,973,641 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,863,013 - 33,873,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,863,286 - 33,871,275 (+)NCBIMGSCv36mm8
Celera1136,374,009 - 36,384,630 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.32NCBI
Kcnmb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,062,014 - 19,119,005 (+)NCBIGRCr8
mRatBN7.21018,557,510 - 18,614,824 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,557,904 - 18,565,798 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1023,312,979 - 23,320,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,801,535 - 22,809,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01018,280,331 - 18,288,287 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01018,910,586 - 18,922,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,906,010 - 18,919,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01018,790,595 - 18,800,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41018,904,902 - 18,912,604 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11018,905,950 - 18,913,652 (+)NCBI
Celera1018,189,045 - 18,196,906 (+)NCBICelera
Cytogenetic Map10q12NCBI
Kcnmb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,325,225 - 23,335,298 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,306,286 - 23,335,170 (-)NCBIChiLan1.0ChiLan1.0
KCNMB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,536,841 - 41,545,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,537,225 - 41,545,344 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha441,491,752 - 41,497,517 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0441,912,957 - 41,922,108 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl441,912,853 - 41,921,446 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,733,152 - 41,738,919 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0441,919,686 - 41,925,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,430,404 - 42,436,172 (+)NCBIUU_Cfam_GSD_1.0
Kcnmb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,728,790 - 95,736,033 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366094,451,492 - 4,458,712 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366094,451,526 - 4,458,665 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNMB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1653,618,603 - 53,631,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11653,616,532 - 53,631,197 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21657,959,628 - 57,972,407 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNMB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,580,617 - 72,591,070 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2372,577,813 - 72,591,588 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660346,070,733 - 6,081,816 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnmb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473319,582,489 - 19,597,722 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473319,582,646 - 19,593,581 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000054287   ⟹   ENSPPAP00000031423
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5172,495,762 - 172,507,318 (-)Ensembl
RefSeq Acc Id: XM_003810926   ⟹   XP_003810974
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24165,531,886 - 165,545,457 (-)NCBI
NHGRI_mPanPan15163,669,031 - 163,685,000 (-)NCBI
Mhudiblu_PPA_v05165,736,338 - 165,747,948 (-)NCBI
PanPan1.15172,495,762 - 172,507,318 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810974 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031423
  ENSPPAP00000031423.1
Reference Protein Sequences
RefSeq Acc Id: XP_003810974   ⟸   XM_003810926
- UniProtKB: A0A2R9BSK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000031423   ⟸   ENSPPAT00000054287


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038648 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054287.1 UniProtKB/TrEMBL
InterPro K_chnl_Ca-activ_BK_bsu UniProtKB/TrEMBL
KEGG Report pps:100977305 UniProtKB/TrEMBL
NCBI Gene KCNMB1 ENTREZGENE
PANTHER CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA-1 UniProtKB/TrEMBL
  PTHR10258 UniProtKB/TrEMBL
Pfam CaKB UniProtKB/TrEMBL
PRINTS BKCHANNELB UniProtKB/TrEMBL
UniProt A0A2R9BSK9 ENTREZGENE, UniProtKB/TrEMBL