HNRNPD (heterogeneous nuclear ribonucleoprotein D)

Gene: HNRNPD (heterogeneous nuclear ribonucleoprotein D) Pan paniscus

Analyze

Symbol:

HNRNPD

Name:

heterogeneous nuclear ribonucleoprotein D

RGD ID:

11928523

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); mCRD-mediated mRNA stability complex (ortholog); postsynaptic density (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

heterogeneous nuclear ribonucleoprotein D0

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	47,882,558 - 47,902,533 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	41,825,518 - 41,846,166 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	47,675,382 - 47,696,894 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,676,599 - 47,696,894 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 4q21 deletion syndrome (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

uremia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA destabilization (ISO)

cellular response to amino acid stimulus (ISO)

cellular response to estradiol stimulus (ISO)

cellular response to nitric oxide (ISO)

cellular response to putrescine (ISO)

cerebellum development (ISO)

circadian regulation of translation (IEA)

CRD-mediated mRNA stabilization (IEA)

hepatocyte dedifferentiation (ISO)

liver development (ISO)

mRNA transcription by RNA polymerase II (ISO)

negative regulation of gene expression (ISO)

negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

positive regulation of cytoplasmic translation (IEA)

positive regulation of gene expression (ISO)

positive regulation of telomere capping (IEA)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of translation (IEA)

regulation of circadian rhythm (IEA)

regulation of gene expression (IEA)

regulation of mRNA stability (IEA,ISO)

regulation of telomere maintenance (IEA)

response to calcium ion (ISO)

response to electrical stimulus (ISO)

response to estradiol (ISO)

response to rapamycin (ISO)

response to sodium phosphate (ISO)

response to xenobiotic stimulus (ISO)

Cellular Component

cytosol (IEA)

glutamatergic synapse (ISO)

mCRD-mediated mRNA stability complex (IEA,ISO)

nucleoplasm (IEA)

postsynaptic density (ISO)

ribonucleoprotein complex (IEA)

synapse (IEA,ISO)

Molecular Function

chromatin binding (ISO)

histone deacetylase binding (ISO)

minor groove of adenine-thymine-rich DNA binding (ISO)

mRNA 3'-UTR AU-rich region binding (ISO)

mRNA binding (ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

telomeric DNA binding (IEA)

transcription factor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HNRNPD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	47,882,558 - 47,902,533 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	41,825,518 - 41,846,166 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	47,675,382 - 47,696,894 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,676,599 - 47,696,894 (+)	Ensembl	panpan1.1		panPan2

HNRNPD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	82,352,498 - 82,373,991 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	82,352,498 - 82,374,503 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	83,273,651 - 83,295,144 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	83,493,491 - 83,514,173 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	83,631,645 - 83,652,328	NCBI
Celera	4	80,565,274 - 80,585,965 (-)	NCBI		Celera
Cytogenetic Map	4	q21.22	NCBI
HuRef	4	79,014,546 - 79,035,236 (-)	NCBI		HuRef
CHM1_1	4	83,250,972 - 83,271,667 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	85,681,761 - 85,703,272 (-)	NCBI		T2T-CHM13v2.0

Hnrnpd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,103,794 - 100,126,926 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	100,103,794 - 100,126,797 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	99,955,935 - 99,979,130 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	99,955,935 - 99,978,938 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	100,384,955 - 100,407,957 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	100,201,309 - 100,218,851 (-)	NCBI		MGSCv36	mm8
Celera	5	97,269,494 - 97,292,491 (-)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.46	NCBI

Hnrnpd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,918,630 - 9,938,072 (+)	NCBI		GRCr8
mRatBN7.2	14	9,615,375 - 9,638,975 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	9,615,479 - 9,633,786 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	9,586,928 - 9,605,215 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,886,767 - 10,905,061 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	9,583,376 - 9,601,670 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	11,256,163 - 11,274,684 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	11,256,268 - 11,274,578 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	11,200,186 - 11,218,696 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	10,917,674 - 10,935,989 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	10,917,909 - 10,935,760 (+)	NCBI
Celera	14	9,716,133 - 9,734,433 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Hnrnpd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	6,454,454 - 6,469,904 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	6,452,931 - 6,470,209 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	6,323,444 - 6,341,238 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	6,323,469 - 6,341,166 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	35,539,639 - 35,557,456 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	6,346,646 - 6,364,470 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	6,346,649 - 6,364,352 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	6,376,955 - 6,394,761 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	6,283,881 - 6,301,733 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	33,661,515 - 33,679,335 (+)	NCBI		UU_Cfam_GSD_1.0

Hnrnpd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,934,255 - 5,953,306 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	2,096,370 - 2,113,604 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	2,096,370 - 2,115,135 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,844,487 - 135,862,626 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	135,844,492 - 135,862,633 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	145,204,594 - 145,218,439 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	30,729,697 - 30,749,793 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	30,731,175 - 30,749,876 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	9,284,119 - 9,304,361 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	8,531,601 - 8,549,835 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	8,532,373 - 8,549,840 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014344637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004671047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004671048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010111965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010111966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000048249 ⟹ ENSPPAP00000025422

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,676,599 - 47,694,894 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048250 ⟹ ENSPPAP00000025423

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,676,599 - 47,694,894 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048253 ⟹ ENSPPAP00000025426

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,676,599 - 47,694,894 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048260 ⟹ ENSPPAP00000025433

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,691,409 - 47,696,894 (+)	Ensembl

RefSeq Acc Id:

XM_014344637 ⟹ XP_014200123

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI
NHGRI_mPanPan1	4	47,882,559 - 47,902,533 (+)	NCBI
Mhudiblu_PPA_v0	4	41,825,523 - 41,846,166 (+)	NCBI
PanPan1.1	4	47,675,382 - 47,696,894 (+)	NCBI

Sequence:

show sequence

TGACTCACGACATTTATATATTCTATGTACAAAGGCTAAAGAACATTAAGCGAACCCTTGATTT
AACACACTTTCCAATTATTAGTAACGTAAAGGAATCACGGTACGTTTTAGGATCTTTAAACAAC
AAAAGCAAAGCAAAAACAATGTTTTCCTTAAGATATGCAAGTTACCTGCTTCTTCGACCAAAAA
CAAAAAATTTCAGGAGAAAAGCAGGCAAACAAAAATCTTACTTGGAAAGCCAAATCTTAAAAAG
AAGCCCTATCGGCCCAGCGGCGATAGACGAAAACCTCAATGTCACCCGGTCCCGGGCGGCGACG
GCAGGGAGAGTAGCTGCGGCAATCAGTGCGCGCGCGGTCCGCTGCGGCGCCTGGCGCTCCGCGG
GCGTCCGGGTGGACAGAGCCAGGGGCACAGGGCTGACATCTCAGGGCTAATTCCCTCCTCCAGT
GCGTAAATCCAGGCTTAAGCCGCCGCAGGGTGTGAGCCTCCCCTCCCCCACCCGAACGCCGCAG
CTGCACGGGGCACGACAGCCTTCGCAGAGGTGCAGCCACACCCCGGCCTAACGCTGCTGCTCCC
GCCGCTACTGGAGTGGTGGGGAGGGGTGAGTGGACTCCAGGAATCCTCGGAAGGGCGGGGGCGG
AGGCAGGGGGCCCCTCTAGCCGCTACTTCGAAACAGCACTCCTTGTTCTCGATGGTCCCCGCGC
GACTGTCTTAGCTCACGACACTTCCGGTTCCTTTTAAAGGCCCCCAAGGCTGTGCAACGCGGAG
CGTGAGAGGAAGGTATAAAGGGTAGCGAGAGGGCGGGACCGAGGAGGAAAGGGAAAAAAAAAAC
TAGGGGGATAGGGTGGGGGGACGCGCGAAGGGCGCGCTCTCGCGTCACGTGACCGGGACGCGCC
GTTCTTCCGTCGGCCATTTTAGGTGGTCCGCGGCGGCGCCATTAAAGCGAGGAGGAGGCAAGAG
CGGCCGCCGCTGGTGCTTATTCTTTTTTAGTGCAGCGGGAGAGAGCGGGAGTGTGCGCCGCGCG
AGAGTGGGAGGCGAAGGGGGCAGGCCAGGGAGAGGCGCAGGAGCCTTTGCAGCCACGCGCGCGC
CTTCCCTGTCTTGTGTGCTTCGCGAGGTAGAGCGGGCGCGCGGCAGCGGCGGGGATTACTTTGC
TGCTAGTTTCGGTTCGCGGCAGCGGCGGGTGTAGTCTCGGCGGCAGCGGCGGAGACACTAGCAC
TATGTCGGAGGAGCAGTTCGGCGGGGACGGGGCGGCGGCAGCGGCAACGGCGGCGGTAGGCGGC
TCGGCGGGCGAGCAGGAGGGAGCCATGGTGGCGGCGACACAGGGGNCAGCGGCGGCGGCGGGAA
GCGGAGCCGGGACCNGGGGCGGAACCGCGTCTGGAGGCACCGAAGGGGGCAGCGCCGAGTCGGA
GGGGGCGAAGATTGACGCCAGTAAGAACGAGGAGGATGAAGGCCATTCAAACTCCTCCCCACGA
CACTCTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAATGTTTATAGGAGGCCTTAGCTGGG
ACACTACAAAGAAAGATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTGTAGACTGCACTCT
GAAGTTAGATCCTATCACAGGGCGATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAATCGGAG
AGTGTAGATAAGGTCATGGATCAAAAAGAACATAAATTGAATGGGAAGGTGATTGATCCTAAAA
GGGCCAAAGCCATGAAAACAAAAGAGCCGGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGA
TACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGGTTTTGGTGAGGTGGAATCCATAGAGCTC
CCCATGGACAACAAGACCAATAAGAGGCGTGGATTCTGCTTTATTACCTTTAAGGAGGAAGAAC
CAGTGAAGAAGATAATGGAAAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGT
AGCCATGTCGAAGGAACAATATCAGCAACAGCAACAGTGGGGATCTAGAGGAGGATTTGCAGGA
AGAGCTCGTGGAAGAGGTGGTGGCCCCAGTCAAAACTGGAACCAGGGATATAGTAACTATTGGA
ATCAAGGCTATGGCAACTATGGATATAACAGCCAAGGTTACGGTGGTTATGGAGGATATGACTA
CACTGGTTACAACAACTACTATGGATATGGTGATTATAGCAACCAGCAGAGTGGTTATGGGAAG
GTATCCAGGCGAGGTGGTCATCAAAATAGCTACAAACCATACTAAATTATTCCATTTGCAACTT
ATCCCCAACAGGTGGTGAAGCAGTATTTTCCAATTTGAAGATTCATTTGAAGGTGGCTCCTGCC
ACCTGCTAATAGCAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATGACGTTG
GGTCCCTCTGAAGTTTAATTCTGAGTTCTCATTAAAAGAAATTTGCTTTCATTGTTTTATTTCT
TAATTGCTATGCTTCAGAATCAATTTGTGTTTTATGCCCTTTCCCCCAGTATTGTAGAGCAAGT
CTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAA
ATCCTTTTGTATAAAAATGTATTGGCTCTTTTATCATCAGAATAGGAAAAATTGTCATGGATTC
AAGTTATTAAAAGCATAAGTTTGGAAGACAGGCTTGCCGAAATTGAGGACATGATTAAAATTGC
AGTGAAGTTTGAAATGTTTTTAGCAAAATCTAATTTTTGCCATAATGTGTCCTCCCTGTCCAAA
TTGGGAATGACTTAATGTCAATTTGTTTGTTGGTTGTTTTAATAATACTTCCTTATGTAGCCAT
TAAGATTTATATGAATATTTTCCCAAATGCCCAGTTTTTGCTTAATATGTATTGTGCTTTTTAG
AACAAATCTGGATAAATGTGCAAAAAGTACCCCTTTGCACAGATAGTTGTTTTATGCTTCCATT
AAATAAAAAGGACTTAAAATCTGTTAATTATAATAGAAATGCGGCTAGTTCAGAGAGATTTTTA
GAGCTGTGGTGGACTTCATAGATGAATTCAAGTGTTGAGGGAGGATTAAAGAAATATATACCGT
G

hide sequence

RefSeq Acc Id:

XM_034958580 ⟹ XP_034814471

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI
NHGRI_mPanPan1	4	47,882,558 - 47,902,533 (+)	NCBI
Mhudiblu_PPA_v0	4	41,825,518 - 41,846,166 (+)	NCBI

RefSeq Acc Id:

XM_034958581 ⟹ XP_034814472

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI
NHGRI_mPanPan1	4	47,882,560 - 47,902,533 (+)	NCBI
Mhudiblu_PPA_v0	4	41,825,518 - 41,846,166 (+)	NCBI

RefSeq Acc Id:

XM_034958583 ⟹ XP_034814474

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI
NHGRI_mPanPan1	4	47,882,559 - 47,902,533 (+)	NCBI
Mhudiblu_PPA_v0	4	41,825,518 - 41,846,166 (+)	NCBI

RefSeq Acc Id:

XR_010111965

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI

RefSeq Acc Id:

XR_010111966

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,690,517 - 47,713,374 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_014200123	(Get FASTA)	NCBI Sequence Viewer
	XP_034814471	(Get FASTA)	NCBI Sequence Viewer
	XP_034814472	(Get FASTA)	NCBI Sequence Viewer
	XP_034814474	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000025422.1
	ENSPPAP00000025423.1
	ENSPPAP00000025426.1
	ENSPPAP00000025433.1

RefSeq Acc Id:	XP_014200123 ⟸ XM_014344637
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9B755 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGXAAAAGSGAGTXGGTASGGTEGGSAESE GAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPD TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY hide sequence

RefSeq Acc Id:	XP_034814472 ⟸ XM_034958581
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034814471 ⟸ XM_034958580
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B757 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034814474 ⟸ XM_034958583
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSPPAP00000025422 ⟸ ENSPPAT00000048249

RefSeq Acc Id:

ENSPPAP00000025423 ⟸ ENSPPAT00000048250

RefSeq Acc Id:

ENSPPAP00000025426 ⟸ ENSPPAT00000048253

RefSeq Acc Id:

ENSPPAP00000025433 ⟸ ENSPPAT00000048260

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035750	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000048249.1	UniProtKB/TrEMBL
	ENSPPAT00000048250.1	UniProtKB/TrEMBL
	ENSPPAT00000048253.1	UniProtKB/TrEMBL
	ENSPPAT00000048260.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	CARG-binding_factor_N	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	HNRNPD	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0	UniProtKB/TrEMBL
	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	UniProtKB/TrEMBL
Pfam	CBFNT	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A2R9B755	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9B757	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9B763_PANPA	UniProtKB/TrEMBL
	A0A2R9B8L4_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations