RAG2 (recombination activating 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RAG2 (recombination activating 2) Pan paniscus
Analyze
Symbol: RAG2
Name: recombination activating 2
RGD ID: 11927155
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); metal ion binding (inferred); INVOLVED IN B cell differentiation (ortholog); B cell homeostatic proliferation (ortholog); B cell lineage commitment (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH combined cellular and humoral immune defects with granulomas (ortholog); common variable immunodeficiency (ortholog); Eosinophilia (ortholog); FOUND IN DNA recombinase complex (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V(D)J recombination-activating protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2938,806,254 - 38,808,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,810,920 - 38,813,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,558,419 - 36,564,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11136,431,067 - 36,437,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1136,431,703 - 36,433,286 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2938,806,254 - 38,808,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,810,920 - 38,813,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,558,419 - 36,564,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11136,431,067 - 36,437,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1136,431,703 - 36,433,286 (-)Ensemblpanpan1.1panPan2
RAG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381136,590,996 - 36,598,236 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1136,575,574 - 36,598,279 (-)EnsemblGRCh38hg38GRCh38
GRCh371136,613,493 - 36,619,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361136,570,069 - 36,576,388 (-)NCBINCBI36Build 36hg18NCBI36
Celera1136,765,924 - 36,772,260 (-)NCBICelera
Cytogenetic Map11p12NCBI
HuRef1136,316,277 - 36,322,614 (-)NCBIHuRef
CHM1_11136,612,179 - 36,618,515 (-)NCBICHM1_1
T2T-CHM13v2.01136,734,171 - 36,741,410 (-)NCBIT2T-CHM13v2.0
Rag2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392101,455,057 - 101,462,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2101,455,063 - 101,462,874 (+)EnsemblGRCm39 Ensembl
GRCm382101,624,712 - 101,632,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2101,624,718 - 101,632,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv372101,464,905 - 101,472,685 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362101,425,587 - 101,433,367 (+)NCBIMGSCv36mm8
Celera2102,849,742 - 102,857,519 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map253.87NCBI
Rag2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83108,357,399 - 108,367,186 (+)NCBIGRCr8
mRatBN7.2387,902,373 - 87,910,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl387,902,238 - 87,911,066 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx391,393,248 - 91,401,103 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0399,992,269 - 100,000,128 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0397,824,520 - 97,832,368 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0391,191,837 - 91,200,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,191,837 - 91,200,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0397,851,318 - 97,859,615 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4386,764,810 - 86,773,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1386,661,236 - 86,668,153 (+)NCBI
Celera387,008,586 - 87,016,420 (+)NCBICelera
Cytogenetic Map3q31NCBI
Rag2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554229,867,307 - 9,869,732 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554229,867,307 - 9,869,732 (+)NCBIChiLan1.0ChiLan1.0
RAG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11831,614,143 - 31,621,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1831,618,481 - 31,620,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1831,225,259 - 31,228,771 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01832,228,286 - 32,231,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1832,228,787 - 32,230,370 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11831,798,300 - 31,801,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01831,382,649 - 31,386,158 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,019,854 - 32,023,367 (+)NCBIUU_Cfam_GSD_1.0
Rag2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494728,680,736 - 28,683,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365331,801,391 - 1,807,431 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365331,801,207 - 1,807,431 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl224,547,644 - 24,558,403 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1224,547,605 - 24,553,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2226,716,416 - 26,717,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,645,175 - 28,653,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,649,930 - 28,651,513 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038125,790,092 - 125,792,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rag2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476710,678,359 - 10,680,132 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476710,678,547 - 10,680,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000005175   ⟹   ENSPPAP00000001111
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1136,431,703 - 36,433,286 (-)Ensembl
RefSeq Acc Id: XM_003830353   ⟹   XP_003830401
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2938,806,254 - 38,808,778 (-)NCBI
NHGRI_mPanPan11138,810,920 - 38,813,448 (-)NCBI
Mhudiblu_PPA_v01136,558,419 - 36,564,997 (-)NCBI
PanPan1.11136,431,067 - 36,437,390 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001111.1
RefSeq Acc Id: XP_003830401   ⟸   XM_003830353
- UniProtKB: A0A2R8ZER4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001111   ⟸   ENSPPAT00000005175

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000004799 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000005175.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
  Rag2 PHD finger UniProtKB/TrEMBL
InterPro Gal_Oxase/kelch_b-propeller UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  RAG2 UniProtKB/TrEMBL
  RAG2_PHD UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
KEGG Report pps:100982621 UniProtKB/TrEMBL
NCBI Gene RAG2 ENTREZGENE
PANTHER PTHR10960 UniProtKB/TrEMBL
  V(D)J RECOMBINATION-ACTIVATING PROTEIN 2 UniProtKB/TrEMBL
Pfam RAG2 UniProtKB/TrEMBL
  RAG2_PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF50965 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A2R8ZER4 ENTREZGENE, UniProtKB/TrEMBL