HDAC5 (histone deacetylase 5) - Rat Genome Database

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Gene: HDAC5 (histone deacetylase 5) Pan paniscus
Analyze
Symbol: HDAC5
Name: histone deacetylase 5
RGD ID: 11921854
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to fluid shear stress (ortholog); cellular response to lipopolysaccharide (ortholog); heart development (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute kidney failure (ortholog); adjustment disorder (ortholog); bipolar disorder (ortholog); FOUND IN axonal growth cone (ortholog); chromatin (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103786779; uncharacterized LOC103786779
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,783,181 - 20,828,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,748,121 - 22,794,804 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,273,052 - 13,319,695 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,464,171 - 13,480,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,446,836 - 13,479,140 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
HDAC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,783,181 - 20,828,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,748,121 - 22,794,804 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,273,052 - 13,319,695 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,464,171 - 13,480,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,446,836 - 13,479,140 (+)Ensemblpanpan1.1panPan2
HDAC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381744,076,753 - 44,123,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1744,076,746 - 44,123,702 (-)EnsemblGRCh38hg38GRCh38
GRCh371742,154,121 - 42,201,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,509,647 - 39,556,540 (-)NCBINCBI36Build 36hg18NCBI36
Celera1738,862,215 - 38,909,110 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1737,918,049 - 37,965,007 (-)NCBIHuRef
CHM1_11742,389,491 - 42,436,420 (-)NCBICHM1_1
T2T-CHM13v2.01744,929,260 - 44,976,146 (-)NCBIT2T-CHM13v2.0
Hdac5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,085,244 - 102,120,968 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,085,258 - 102,120,992 (-)EnsemblGRCm39 Ensembl
GRCm3811102,195,747 - 102,230,172 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,194,432 - 102,230,166 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,057,061 - 102,091,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,011,837 - 102,040,929 (-)NCBIMGSCv36mm8
Celera11113,901,623 - 113,936,685 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.82NCBI
Hdac5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,653,139 - 87,688,078 (-)NCBIGRCr8
mRatBN7.21087,152,978 - 87,187,921 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1087,152,978 - 87,188,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1092,182,699 - 92,217,573 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,654,605 - 91,689,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01087,047,923 - 87,082,826 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01090,140,183 - 90,169,853 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,140,183 - 90,151,042 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,927,486 - 89,956,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,266,512 - 91,277,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11091,290,701 - 91,292,062 (-)NCBI
Celera1085,868,901 - 85,904,236 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Hdac5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,223,287 - 17,244,051 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,223,217 - 17,246,451 (-)NCBIChiLan1.0ChiLan1.0
HDAC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,261,075 - 19,297,669 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,260,893 - 19,297,623 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,651,855 - 18,687,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,957,058 - 19,992,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl919,957,080 - 19,994,564 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1918,810,173 - 18,846,100 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,993,422 - 19,029,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,138,202 - 19,174,140 (+)NCBIUU_Cfam_GSD_1.0
Hdac5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,595,662 - 18,631,399 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541558,414 - 599,195 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541561,721 - 598,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,078,005 - 19,121,154 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,077,910 - 19,119,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,364,064 - 19,374,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,267,837 - 62,314,914 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,274,041 - 62,315,094 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607733,041,248 - 33,087,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624795818,154 - 837,961 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624795814,134 - 838,031 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034941746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000040570   ⟹   ENSPPAP00000017851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1713,446,836 - 13,479,140 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040584   ⟹   ENSPPAP00000017864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1713,446,836 - 13,479,140 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040593   ⟹   ENSPPAP00000017873
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1713,446,836 - 13,479,140 (+)Ensembl
RefSeq Acc Id: XM_034941746   ⟹   XP_034797637
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,181 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,121 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941747   ⟹   XP_034797638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,424 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,302 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941748   ⟹   XP_034797639
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,788 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,123 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941749   ⟹   XP_034797640
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941751   ⟹   XP_034797642
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,770 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941755   ⟹   XP_034797646
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941757   ⟹   XP_034797648
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,053 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941758   ⟹   XP_034797649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,830 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,167 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,052 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_034941759   ⟹   XP_034797650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,830 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,167 - 22,794,804 (+)NCBI
Mhudiblu_PPA_v01713,273,052 - 13,319,695 (+)NCBI
RefSeq Acc Id: XM_055101762   ⟹   XP_054957737
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,796,621 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,760,955 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_055101763   ⟹   XP_054957738
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,796,621 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,760,955 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_055101764   ⟹   XP_054957739
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_055101765   ⟹   XP_054957740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,796,621 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,760,955 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_055101766   ⟹   XP_054957741
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,748,168 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_055101767   ⟹   XP_054957742
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,796,621 - 20,828,927 (+)NCBI
NHGRI_mPanPan11722,760,955 - 22,794,804 (+)NCBI
RefSeq Acc Id: XM_063599009   ⟹   XP_063455079
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599010   ⟹   XP_063455080
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599011   ⟹   XP_063455081
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599012   ⟹   XP_063455082
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599013   ⟹   XP_063455083
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,802,519 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599014   ⟹   XP_063455084
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599015   ⟹   XP_063455085
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,831 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599016   ⟹   XP_063455086
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,796,621 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599017   ⟹   XP_063455087
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,830 - 20,828,927 (+)NCBI
RefSeq Acc Id: XM_063599018   ⟹   XP_063455088
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,783,830 - 20,828,927 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034797637 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797638 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797639 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797640 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797642 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797646 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797648 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797649 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797650 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957737 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957738 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957739 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957740 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957741 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957742 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455081 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455082 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455083 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455084 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455085 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455086 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455087 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455088 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017851.1
  ENSPPAP00000017864.1
  ENSPPAP00000017873.1
Reference Protein Sequences
RefSeq Acc Id: XP_034797649   ⟸   XM_034941758
- Peptide Label: isoform X15
- UniProtKB: A0A2R9AL80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797650   ⟸   XM_034941759
- Peptide Label: isoform X16
- UniProtKB: A0A2R9AL80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797640   ⟸   XM_034941749
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797637   ⟸   XM_034941746
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797648   ⟸   XM_034941757
- Peptide Label: isoform X11
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797642   ⟸   XM_034941751
- Peptide Label: isoform X5
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797639   ⟸   XM_034941748
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797646   ⟸   XM_034941755
- Peptide Label: isoform X7
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797638   ⟸   XM_034941747
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000017851   ⟸   ENSPPAT00000040570
RefSeq Acc Id: ENSPPAP00000017864   ⟸   ENSPPAT00000040584
RefSeq Acc Id: ENSPPAP00000017873   ⟸   ENSPPAT00000040593
RefSeq Acc Id: XP_054957741   ⟸   XM_055101766
- Peptide Label: isoform X12
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957739   ⟸   XM_055101764
- Peptide Label: isoform X6
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957737   ⟸   XM_055101762
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957742   ⟸   XM_055101767
- Peptide Label: isoform X13
- UniProtKB: A0A2R9AL80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957740   ⟸   XM_055101765
- Peptide Label: isoform X9
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957738   ⟸   XM_055101763
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AKG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063455087   ⟸   XM_063599017
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063455088   ⟸   XM_063599018
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063455084   ⟸   XM_063599014
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063455079   ⟸   XM_063599009
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063455085   ⟸   XM_063599015
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063455080   ⟸   XM_063599010
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063455081   ⟸   XM_063599011
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063455082   ⟸   XM_063599012
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063455086   ⟸   XM_063599016
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063455083   ⟸   XM_063599013
- Peptide Label: isoform X10
Protein Domains
Histone deacetylase   Histone deacetylase glutamine rich N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040570.1 UniProtKB/TrEMBL
  ENSPPAT00000040584.1 UniProtKB/TrEMBL
  ENSPPAT00000040593.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/TrEMBL
NCBI Gene HDAC5 ENTREZGENE
PANTHER HISTONE DEACETYLASE UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A2R9AKG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AL80 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ASL9_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 HDAC5  histone deacetylase 5  LOC103786779  uncharacterized LOC103786779  Data merged from RGD:11918132 737654 PROVISIONAL