CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5) - Rat Genome Database

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Gene: CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5) Pan paniscus
Analyze
Symbol: CACNG5
Name: calcium voltage-gated channel auxiliary subunit gamma 5
RGD ID: 11901783
Description: ENCODES a protein that exhibits channel regulator activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transmembrane transport (inferred); calcium ion transport (inferred); neurotransmitter receptor internalization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-5 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,864,777 - 82,924,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,684,073 - 87,743,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,771,501 - 60,831,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11765,979,469 - 66,031,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,979,469 - 66,031,723 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,864,777 - 82,924,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,684,073 - 87,743,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,771,501 - 60,831,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11765,979,469 - 66,031,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,979,469 - 66,031,723 (+)Ensemblpanpan1.1panPan2
CACNG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,835,117 - 66,894,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,835,117 - 66,894,751 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,831,235 - 64,890,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,303,913 - 62,311,819 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,303,912 - 62,311,561NCBI
Celera1761,446,119 - 61,454,026 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,262,608 - 60,270,613 (+)NCBIHuRef
CHM1_11764,937,383 - 64,945,388 (+)NCBICHM1_1
T2T-CHM13v2.01767,710,939 - 67,770,522 (+)NCBIT2T-CHM13v2.0
Cacng5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,765,431 - 107,805,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,765,431 - 107,805,881 (-)EnsemblGRCm39 Ensembl
GRCm3811107,874,604 - 107,915,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,874,605 - 107,915,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,735,919 - 107,772,676 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,690,695 - 107,727,452 (-)NCBIMGSCv36mm8
Celera11119,610,080 - 119,648,160 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.44NCBI
Cacng5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,327,142 - 93,369,244 (-)NCBIGRCr8
mRatBN7.21092,827,441 - 92,869,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,829,196 - 92,869,614 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,888,205 - 97,895,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,351,240 - 97,358,289 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,760,001 - 92,766,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01096,122,240 - 96,166,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1096,123,397 - 96,131,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,853,195 - 95,894,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,300,594 - 97,309,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,314,963 - 97,323,393 (-)NCBI
Celera1091,494,396 - 91,501,201 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,110,146 - 6,155,034 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,110,440 - 6,152,677 (+)NCBIChiLan1.0ChiLan1.0
CACNG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,575,902 - 13,587,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,578,805 - 13,615,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,238,906 - 15,278,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,310,392 - 13,349,413 (+)NCBIUU_Cfam_GSD_1.0
Cacng5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,984,674 - 13,025,336 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,168,904 - 6,182,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,168,186 - 6,209,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,288,544 - 13,328,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,288,510 - 13,328,811 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,660,097 - 13,696,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,561,040 - 54,612,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,561,317 - 54,569,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,599,437 - 25,654,351 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,517,746 - 1,569,379 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,518,813 - 1,569,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000057634   ⟹   ENSPPAP00000034750
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1765,979,469 - 66,031,723 (+)Ensembl
RefSeq Acc Id: XM_003812354   ⟹   XP_003812402
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21982,864,777 - 82,924,482 (+)NCBI
NHGRI_mPanPan11787,684,073 - 87,743,760 (+)NCBI
Mhudiblu_PPA_v01760,771,501 - 60,831,190 (+)NCBI
PanPan1.11765,979,469 - 66,031,723 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034942752   ⟹   XP_034798643
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21982,864,777 - 82,914,718 (+)NCBI
NHGRI_mPanPan11787,684,073 - 87,734,005 (+)NCBI
Mhudiblu_PPA_v01760,771,501 - 60,821,430 (+)NCBI
RefSeq Acc Id: XM_034942753   ⟹   XP_034798644
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21982,864,777 - 82,914,718 (+)NCBI
NHGRI_mPanPan11787,684,073 - 87,734,005 (+)NCBI
Mhudiblu_PPA_v01760,771,501 - 60,821,430 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003812402 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798643 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798644 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034750
  ENSPPAP00000034750.1
Reference Protein Sequences
RefSeq Acc Id: XP_003812402   ⟸   XM_003812354
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C1U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034798643   ⟸   XM_034942752
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034798644   ⟸   XM_034942753
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000034750   ⟸   ENSPPAT00000057634


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040213 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057634.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g5su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
KEGG Report pps:100992487 UniProtKB/TrEMBL
NCBI Gene CACNG5 ENTREZGENE
PANTHER PTHR12107:SF4 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA5 UniProtKB/TrEMBL
UniProt A0A2R9C1U1 ENTREZGENE, UniProtKB/TrEMBL