FNDC11 (fibronectin type III domain containing 11) - Rat Genome Database

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Gene: FNDC11 (fibronectin type III domain containing 11) Pan paniscus
Analyze
Symbol: FNDC11
Name: fibronectin type III domain containing 11
RGD ID: 11892531
Description: ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibronectin type III domain-containing protein 11; uncharacterized protein C20orf195 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,354,568 - 69,362,562 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,346,738 - 69,352,701 (+)NCBINHGRI_mPanPan1
PanPan1.12061,479,162 - 61,482,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,481,269 - 61,482,225 (+)Ensemblpanpan1.1panPan2


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
FNDC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,354,568 - 69,362,562 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,346,738 - 69,352,701 (+)NCBINHGRI_mPanPan1
PanPan1.12061,479,162 - 61,482,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,481,269 - 61,482,225 (+)Ensemblpanpan1.1panPan2
FNDC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,553,020 - 63,556,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,547,891 - 63,556,695 (+)EnsemblGRCh38hg38GRCh38
GRCh372062,184,373 - 62,188,061 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,654,817 - 61,658,480 (+)NCBINCBI36Build 36hg18NCBI36
Celera2058,864,733 - 58,868,396 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,914,609 - 58,918,272 (+)NCBIHuRef
CHM1_12062,085,381 - 62,089,044 (+)NCBICHM1_1
T2T-CHM13v2.02065,365,617 - 65,369,305 (+)NCBIT2T-CHM13v2.0
Fndc11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,854,385 - 180,864,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,861,806 - 180,864,647 (+)EnsemblGRCm39 Ensembl
GRCm382181,212,592 - 181,222,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,220,013 - 181,222,854 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,954,721 - 180,957,556 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,149,423 - 181,152,258 (+)NCBIMGSCv36mm8
Celera2185,302,814 - 185,305,651 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
Fndc11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,708,045 - 188,710,670 (+)NCBIGRCr8
mRatBN7.23168,330,607 - 168,333,111 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,330,602 - 168,334,617 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,711,349 - 172,713,768 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,670,452 - 181,672,871 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,331,641 - 178,334,060 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,721,100 - 176,724,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,721,827 - 176,725,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,431,759 - 180,434,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,360,693 - 170,363,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3164,252,879 - 164,255,298 (-)NCBICelera
Cytogenetic Map3q43NCBI
Fndc11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528670,563 - 672,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528670,563 - 672,995 (-)NCBIChiLan1.0ChiLan1.0
FNDC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,142,804 - 47,145,305 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,142,557 - 47,145,260 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,341,587 - 46,344,066 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,111,770 - 48,114,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,111,534 - 48,114,268 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.02447,252,096 - 47,254,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,990,066 - 47,992,568 (+)NCBIUU_Cfam_GSD_1.0
Fndc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,392,130 - 195,394,822 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,847,414 - 10,848,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,847,406 - 10,848,415 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNDC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,558,684 - 62,559,688 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,558,294 - 62,559,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FNDC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,792 - 652,890 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,883 - 649,836 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,207,682 - 48,209,202 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fndc11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,208,384 - 29,210,751 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,209,559 - 29,210,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000005751   ⟹   ENSPPAP00000001207
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2061,481,269 - 61,482,225 (+)Ensembl
RefSeq Acc Id: XM_008962276   ⟹   XP_008960524
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22169,354,568 - 69,360,695 (+)NCBI
NHGRI_mPanPan12069,346,738 - 69,352,701 (+)NCBI
PanPan1.12061,479,162 - 61,482,313 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008962278   ⟹   XP_008960526
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22169,358,068 - 69,360,695 (+)NCBI
NHGRI_mPanPan12069,350,074 - 69,352,701 (+)NCBI
PanPan1.12061,479,705 - 61,482,313 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055104533   ⟹   XP_054960508
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22169,357,489 - 69,362,562 (+)NCBI
NHGRI_mPanPan12069,349,495 - 69,352,701 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008960524 (Get FASTA)   NCBI Sequence Viewer  
  XP_008960526 (Get FASTA)   NCBI Sequence Viewer  
  XP_054960508 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001207
  ENSPPAP00000001207.1
RefSeq Acc Id: XP_008960524   ⟸   XM_008962276
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008960526   ⟸   XM_008962278
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z8G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001207   ⟸   ENSPPAT00000005751
RefSeq Acc Id: XP_054960508   ⟸   XM_055104533
- Peptide Label: isoform X3
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000005751.1 UniProtKB/TrEMBL
InterPro DUF5581_C UniProtKB/TrEMBL
  DUF5581_N UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  FNDC11 UniProtKB/TrEMBL
NCBI Gene FNDC11 ENTREZGENE
PANTHER FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 11 UniProtKB/TrEMBL
  PTHR14537 UniProtKB/TrEMBL
Pfam DUF5581 UniProtKB/TrEMBL
  DUF5581_N UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A2R8Z8G6 ENTREZGENE, UniProtKB/TrEMBL