SETBP1 (SET binding protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SETBP1 (SET binding protein 1) Pan paniscus
Analyze
Symbol: SETBP1
Name: SET binding protein 1
RGD ID: 11819339
Description: ENCODES a protein that exhibits DNA binding (inferred); histone H3K4 methyltransferase activity (inferred); INVOLVED IN chromatin remodeling (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH atrial heart septal defect (ortholog); atypical chronic myeloid leukemia (ortholog); autosomal dominant intellectual developmental disorder 29 (ortholog); FOUND IN cytosol (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21762,106,943 - 62,493,971 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11847,799,709 - 48,186,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01837,963,089 - 38,350,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11841,521,063 - 41,890,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1841,524,998 - 41,885,453 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nuclear body  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SETBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21762,106,943 - 62,493,971 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11847,799,709 - 48,186,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01837,963,089 - 38,350,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11841,521,063 - 41,890,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1841,524,998 - 41,885,453 (+)Ensemblpanpan1.1panPan2
SETBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381844,680,073 - 45,068,510 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1844,680,173 - 45,068,510 (+)EnsemblGRCh38hg38GRCh38
GRCh371842,260,038 - 42,648,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361840,535,467 - 40,898,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 341840,535,466 - 40,898,771NCBI
Celera1839,067,575 - 39,456,828 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
HuRef1839,118,875 - 39,506,275 (+)NCBIHuRef
CHM1_11842,187,179 - 42,575,496 (+)NCBICHM1_1
T2T-CHM13v2.01844,871,239 - 45,259,841 (+)NCBIT2T-CHM13v2.0
Setbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391878,793,593 - 79,153,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1878,793,595 - 79,152,606 (-)EnsemblGRCm39 Ensembl
GRCm381878,750,378 - 79,110,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1878,750,380 - 79,109,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv371878,947,117 - 79,306,130 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361878,916,081 - 79,249,018 (-)NCBIMGSCv36mm8
Celera1879,895,883 - 80,229,100 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1852.67NCBI
Setbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81874,465,616 - 74,827,455 (-)NCBIGRCr8
mRatBN7.21872,190,542 - 72,551,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1872,191,035 - 72,552,556 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01875,090,733 - 75,432,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1875,095,632 - 75,207,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01874,772,163 - 74,960,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41875,649,521 - 75,986,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11875,676,456 - 76,081,254 (-)NCBI
Celera1870,705,419 - 71,043,791 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Setbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540230,380,346 - 30,734,144 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540230,380,346 - 30,738,869 (+)NCBIChiLan1.0ChiLan1.0
SETBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1746,020,892 - 46,378,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl746,020,889 - 46,378,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha745,436,754 - 45,794,531 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0745,971,827 - 46,329,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl745,971,827 - 46,310,849 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1745,672,194 - 46,030,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0745,718,354 - 46,076,096 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0746,003,102 - 46,360,723 (-)NCBIUU_Cfam_GSD_1.0
Setbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494442,283,909 - 42,642,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365171,616,169 - 1,970,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365171,616,169 - 1,798,002 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SETBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl194,295,851 - 94,663,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1194,295,332 - 94,666,560 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21103,929,764 - 103,965,872 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SETBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11835,819,559 - 36,195,895 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605010,206,164 - 10,587,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Setbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247788,465,462 - 8,800,815 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247788,444,681 - 8,800,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052011   ⟹   ENSPPAP00000029163
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1841,524,998 - 41,885,434 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052015   ⟹   ENSPPAP00000029167
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1841,525,170 - 41,699,806 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052019   ⟹   ENSPPAP00000029171
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1841,692,308 - 41,885,453 (+)Ensembl
RefSeq Acc Id: XM_034943599   ⟹   XP_034799490
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21762,106,943 - 62,493,971 (+)NCBI
NHGRI_mPanPan11847,799,709 - 48,186,571 (+)NCBI
Mhudiblu_PPA_v01837,963,089 - 38,350,092 (+)NCBI
RefSeq Acc Id: XM_034943600   ⟹   XP_034799491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21762,107,254 - 62,493,971 (+)NCBI
NHGRI_mPanPan11847,799,852 - 48,186,571 (+)NCBI
Mhudiblu_PPA_v01837,963,418 - 38,350,092 (+)NCBI
RefSeq Acc Id: XM_034943602   ⟹   XP_034799493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21762,106,943 - 62,493,971 (+)NCBI
NHGRI_mPanPan11847,799,709 - 48,186,571 (+)NCBI
Mhudiblu_PPA_v01837,963,278 - 38,350,092 (+)NCBI
RefSeq Acc Id: XM_057300428   ⟹   XP_057156411
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21762,107,254 - 62,493,971 (+)NCBI
NHGRI_mPanPan11847,799,852 - 48,186,571 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034799490 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799491 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799493 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156411 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029163.1
  ENSPPAP00000029167.1
  ENSPPAP00000029171.1
Reference Protein Sequences
RefSeq Acc Id: XP_034799490   ⟸   XM_034943599
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BRC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034799493   ⟸   XM_034943602
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BRC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034799491   ⟸   XM_034943600
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BRC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000029163   ⟸   ENSPPAT00000052011
RefSeq Acc Id: ENSPPAP00000029171   ⟸   ENSPPAT00000052019
RefSeq Acc Id: ENSPPAP00000029167   ⟸   ENSPPAT00000052015
RefSeq Acc Id: XP_057156411   ⟸   XM_057300428
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037611 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052011.1 UniProtKB/TrEMBL
  ENSPPAT00000052015.1 UniProtKB/TrEMBL
  ENSPPAT00000052019.1 UniProtKB/TrEMBL
InterPro AT_hook_DNA-bd_motif UniProtKB/TrEMBL
NCBI Gene SETBP1 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 UniProtKB/TrEMBL
  SET-BINDING PROTEIN UniProtKB/TrEMBL
SMART AT_hook UniProtKB/TrEMBL
UniProt A0A2R9BIK5_PANPA UniProtKB/TrEMBL
  A0A2R9BL90_PANPA UniProtKB/TrEMBL
  A0A2R9BRC6 ENTREZGENE, UniProtKB/TrEMBL