ACTA1 (actin alpha 1, skeletal muscle) - Rat Genome Database

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Gene: ACTA1 (actin alpha 1, skeletal muscle) Pan paniscus
Analyze
Symbol: ACTA1
Name: actin alpha 1, skeletal muscle
RGD ID: 11804710
Description: ENCODES a protein that exhibits ATP hydrolysis activity (inferred); identical protein binding (inferred); kinesin binding (inferred); INVOLVED IN cellular response to organonitrogen compound (ortholog); cellular response to potassium ion (ortholog); response to mechanical stimulus (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); aortic dissection (ortholog); centronuclear myopathy (ortholog); FOUND IN actin cytoskeleton (inferred); actin filament (inferred); adherens junction (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin, alpha 1, skeletal muscle; actin, alpha skeletal muscle
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,778,035 - 19,780,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,970,319 - 19,973,196 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01204,975,646 - 204,978,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,007,622 - 210,010,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,007,622 - 210,010,469 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ACTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,778,035 - 19,780,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,970,319 - 19,973,196 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01204,975,646 - 204,978,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,007,622 - 210,010,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,007,622 - 210,010,469 (-)Ensemblpanpan1.1panPan2
ACTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381229,431,245 - 229,434,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1229,430,365 - 229,434,104 (-)EnsemblGRCh38hg38GRCh38
GRCh371229,566,992 - 229,569,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,633,615 - 227,636,466 (-)NCBINCBI36Build 36hg18NCBI36
Build 341225,873,729 - 225,876,578NCBI
Celera1202,835,304 - 202,838,155 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1200,057,954 - 200,060,804 (-)NCBIHuRef
CHM1_11230,839,339 - 230,842,183 (-)NCBICHM1_1
T2T-CHM13v2.01228,809,946 - 228,812,800 (-)NCBIT2T-CHM13v2.0
Acta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,618,497 - 124,621,514 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,618,508 - 124,621,490 (-)EnsemblGRCm39 Ensembl
GRCm388123,891,758 - 123,894,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,891,769 - 123,894,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,415,667 - 126,418,636 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,777,857 - 126,780,826 (-)NCBIMGSCv36mm8
Celera8128,158,816 - 128,161,785 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.26NCBI
Acta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,781,168 - 68,784,194 (-)NCBIGRCr8
mRatBN7.21951,883,709 - 51,886,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,883,715 - 51,886,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,675,301 - 58,678,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,519,721 - 59,522,747 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,601,732 - 61,604,760 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,674,072 - 56,677,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,674,074 - 56,677,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,389,899 - 67,392,911 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,081,496 - 54,084,508 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,086,370 - 54,089,389 (-)NCBI
Celera1951,258,256 - 51,261,324 (-)NCBICelera
Cytogenetic Map19q12NCBI
Acta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,644,146 - 8,647,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,644,696 - 8,647,412 (+)NCBIChiLan1.0ChiLan1.0
ACTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,811,726 - 9,814,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,811,801 - 9,814,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,802,887 - 9,805,701 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.049,842,369 - 9,845,196 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.149,846,012 - 9,848,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.049,960,597 - 9,963,412 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0410,212,935 - 10,215,761 (+)NCBIUU_Cfam_GSD_1.0
Acta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,071,243 - 44,074,156 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648420,236,320 - 20,239,430 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648420,236,320 - 20,239,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1460,412,812 - 60,415,674 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11460,412,651 - 60,415,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,236,192 - 65,239,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,700,448 - 66,703,325 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2566,700,369 - 66,714,891 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605568,553,718 - 68,559,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,650,822 - 19,654,730 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,650,923 - 19,653,707 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003824459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000044197   ⟹   ENSPPAP00000021395
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1210,007,622 - 210,010,469 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000044208   ⟹   ENSPPAP00000021406
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1210,007,876 - 210,009,480 (-)Ensembl
RefSeq Acc Id: XM_003824459   ⟹   XP_003824507
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,778,035 - 19,780,912 (+)NCBI
NHGRI_mPanPan1119,970,319 - 19,973,196 (+)NCBI
Mhudiblu_PPA_v01204,975,646 - 204,978,523 (-)NCBI
PanPan1.11210,007,622 - 210,010,459 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824507 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021395
  ENSPPAP00000021395.1
  ENSPPAP00000021406.1
  ENSPPAP00000028675.1
RefSeq Acc Id: XP_003824507   ⟸   XM_003824459
- UniProtKB: A0A2R9AZU8 (UniProtKB/TrEMBL),   A0A2R9BGB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000021395   ⟸   ENSPPAT00000044197
RefSeq Acc Id: ENSPPAP00000021406   ⟸   ENSPPAT00000044208


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033916 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000037371 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044197.1 UniProtKB/TrEMBL
  ENSPPAT00000044208.1 UniProtKB/TrEMBL
  ENSPPAT00000051523.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
KEGG Report pps:100987270 UniProtKB/TrEMBL
NCBI Gene ACTA1 ENTREZGENE
PANTHER ACTIN, ALPHA SKELETAL MUSCLE UniProtKB/TrEMBL
  ACTIN, CYTOPLASMIC 1 UniProtKB/TrEMBL
  ACTIN, INDIRECT FLIGHT MUSCLE-RELATED UniProtKB/TrEMBL
  PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A2R9AVW4_PANPA UniProtKB/TrEMBL
  A0A2R9AZU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BGB5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-15 ACTA1  actin alpha 1, skeletal muscle    actin, alpha 1, skeletal muscle  Symbol and/or name change 5135510 APPROVED