NSUN4 (NOP2/Sun RNA methyltransferase 4) - Rat Genome Database

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Gene: NSUN4 (NOP2/Sun RNA methyltransferase 4) Pan paniscus
Analyze
Symbol: NSUN4
Name: NOP2/Sun RNA methyltransferase 4
RGD ID: 11804628
Description: ENCODES a protein that exhibits rRNA (cytosine-C5-)-methyltransferase activity (ortholog); small ribosomal subunit rRNA binding (ortholog); INVOLVED IN cytosolic ribosome assembly (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5-methylcytosine rRNA methyltransferase NSUN4; NOP2/Sun RNA methyltransferase family member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,407,967 - 180,469,443 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,549,575 - 179,611,046 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,642,980 - 45,696,476 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,999,724 - 47,024,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,999,749 - 47,024,152 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NSUN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,407,967 - 180,469,443 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,549,575 - 179,611,046 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,642,980 - 45,696,476 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,999,724 - 47,024,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,999,749 - 47,024,152 (+)Ensemblpanpan1.1panPan2
NSUN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,340,807 - 46,385,199 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,340,789 - 46,365,152 (+)EnsemblGRCh38hg38GRCh38
GRCh37146,806,479 - 46,850,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,578,977 - 46,603,277 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,518,409 - 46,542,710NCBI
Celera145,093,753 - 45,118,052 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef144,921,478 - 44,946,447 (+)NCBIHuRef
CHM1_1146,922,865 - 46,947,850 (+)NCBICHM1_1
T2T-CHM13v2.0146,218,025 - 46,262,412 (+)NCBIT2T-CHM13v2.0
Nsun4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,890,202 - 115,911,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,890,039 - 115,911,073 (-)EnsemblGRCm39 Ensembl
GRCm384116,033,002 - 116,053,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,032,842 - 116,053,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,704,375 - 115,726,481 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,530,774 - 115,551,808 (-)NCBIMGSCv36mm8
Celera4114,770,482 - 114,792,136 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
Nsun4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,749,024 - 134,773,630 (-)NCBIGRCr8
mRatBN7.25129,511,224 - 129,532,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,512,826 - 129,532,228 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5129,512,307 - 129,532,423 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,128,516 - 132,148,523 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,883,402 - 133,903,409 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,905,539 - 133,925,544 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,885,377 - 134,905,492 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,886,497 - 134,905,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,362,680 - 134,382,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,669,115 - 138,689,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05138,152,068 - 138,174,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,277,224 - 136,297,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5128,042,563 - 128,062,561 (-)NCBICelera
Cytogenetic Map5q35NCBI
Nsun4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,932,429 - 11,967,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,934,146 - 11,962,513 (-)NCBIChiLan1.0ChiLan1.0
NSUN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,054,061 - 14,069,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,056,004 - 14,068,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,174,443 - 14,193,244 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,204,565 - 14,223,051 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11514,005,796 - 14,024,334 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,074,309 - 14,092,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,143,770 - 14,162,312 (-)NCBIUU_Cfam_GSD_1.0
Nsun4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,531,932 - 61,561,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,356,134 - 27,387,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,356,133 - 27,385,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSUN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,091,797 - 165,118,861 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,093,511 - 165,119,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,572,652 - 152,598,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NSUN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,432,047 - 86,453,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,432,414 - 86,453,157 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,537,494 - 30,565,092 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsun4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,230,429 - 2,251,296 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,231,040 - 2,254,083 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000056273   ⟹   ENSPPAP00000033398
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl146,999,749 - 47,024,020 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056274   ⟹   ENSPPAP00000033399
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl146,999,750 - 47,024,152 (+)Ensembl
RefSeq Acc Id: XM_008965205   ⟹   XP_008963453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,443,671 - 180,469,438 (-)NCBI
NHGRI_mPanPan11179,582,530 - 179,611,043 (-)NCBI
Mhudiblu_PPA_v0145,642,980 - 45,667,931 (+)NCBI
PanPan1.1146,999,724 - 47,024,020 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034964185   ⟹   XP_034820076
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,432,946 - 180,469,439 (-)NCBI
NHGRI_mPanPan11179,576,376 - 179,611,044 (-)NCBI
Mhudiblu_PPA_v0145,643,049 - 45,674,025 (+)NCBI
RefSeq Acc Id: XM_055093394   ⟹   XP_054949369
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,432,946 - 180,469,443 (-)NCBI
NHGRI_mPanPan11179,576,374 - 179,611,046 (-)NCBI
RefSeq Acc Id: XM_055093399   ⟹   XP_054949374
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,407,967 - 180,469,443 (-)NCBI
NHGRI_mPanPan11179,549,575 - 179,611,046 (-)NCBI
RefSeq Acc Id: XM_055093403   ⟹   XP_054949378
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,443,671 - 180,467,296 (-)NCBI
NHGRI_mPanPan11179,582,530 - 179,608,894 (-)NCBI
RefSeq Acc Id: XM_055093408   ⟹   XP_054949383
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,443,671 - 180,464,501 (-)NCBI
NHGRI_mPanPan11179,582,530 - 179,606,097 (-)NCBI
RefSeq Acc Id: XM_063601292   ⟹   XP_063457362
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21180,424,823 - 180,469,439 (-)NCBI
RefSeq Acc Id: XP_008963453   ⟸   XM_008965205
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BUP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034820076   ⟸   XM_034964185
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000033399   ⟸   ENSPPAT00000056274
RefSeq Acc Id: ENSPPAP00000033398   ⟸   ENSPPAT00000056273
RefSeq Acc Id: XP_054949374   ⟸   XM_055093399
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054949369   ⟸   XM_055093394
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054949378   ⟸   XM_055093403
- Peptide Label: isoform X6
- UniProtKB: A0A2R9C4B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054949383   ⟸   XM_055093408
- Peptide Label: isoform X6
- UniProtKB: A0A2R9C4B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063457362   ⟸   XM_063601292
- Peptide Label: isoform X5

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056273.1 UniProtKB/TrEMBL
  ENSPPAT00000056274.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
  6.20.240.40 UniProtKB/TrEMBL
InterPro MeTrfase_RsmB/NOP2 UniProtKB/TrEMBL
  RCMT UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
KEGG Report pps:100985399 UniProtKB/TrEMBL
NCBI Gene NSUN4 ENTREZGENE
PANTHER 5-METHYLCYTOSINE RRNA METHYLTRANSFERASE NSUN4 UniProtKB/TrEMBL
  PTHR22808 UniProtKB/TrEMBL
Pfam Methyltr_RsmB-F UniProtKB/TrEMBL
PRINTS RCMTFAMILY UniProtKB/TrEMBL
PROSITE SAM_MT_RSMB_NOP UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A2R9BUP7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C4B6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-05 NSUN4  NOP2/Sun RNA methyltransferase 4    NOP2/Sun RNA methyltransferase family member 4  Symbol and/or name change 5135510 APPROVED