SYTL4 (synaptotagmin like 4) - Rat Genome Database

Name: SYTL4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SYTL4 (synaptotagmin like 4) Pan paniscus

Analyze

Symbol:

SYTL4

Name:

synaptotagmin like 4

RGD ID:

11786933

Description:

ENCODES a protein that exhibits metal ion binding (inferred); neurexin family protein binding (inferred); phospholipid binding (inferred); INVOLVED IN exocytosis (ortholog); insulin secretion (ortholog); negative regulation of insulin secretion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 9 (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synaptotagmin-like protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYTL4 (synaptotagmin like 4)	NCBI	Ortholog
Mus musculus (house mouse):	Sytl4 (synaptotagmin-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sytl4 (synaptotagmin-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sytl4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYTL4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sytl4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYTL4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYTL4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sytl4 (synaptotagmin like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,151 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	100,285,847 - 100,341,747 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	100,024,434 - 100,051,663 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	100,024,434 - 100,051,663 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

developmental and epileptic encephalopathy 9 (ISO)

genetic disease (ISO)

isolated growth hormone deficiency type III (ISO)

ROLANDIC EPILEPSY, INTELLECTUAL DISABILITY, AND SPEECH DYSPRAXIA, X-LINKED (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytosis (IEA,ISO)

insulin secretion (IEA,ISO)

intracellular protein transport (IEA)

lysosome localization (IEA)

multivesicular body sorting pathway (IEA)

negative regulation of insulin secretion (IEA,ISO)

plasma membrane repair (IEA)

positive regulation of exocytosis (IEA)

positive regulation of protein secretion (IEA)

regulation of plasma membrane repair (IEA)

Cellular Component

apical plasma membrane (ISO)

endosome (IEA)

exocytic vesicle (IEA)

membrane (IEA)

plasma membrane (IEA)

secretory granule (IEA)

Molecular Function

metal ion binding (IEA)

neurexin family protein binding (IEA)

phospholipid binding (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SYTL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,151 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	100,285,847 - 100,341,747 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	100,024,434 - 100,051,663 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	100,024,434 - 100,051,663 (-)	Ensembl	panpan1.1		panPan2

SYTL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	100,674,491 - 100,732,121 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	100,671,783 - 100,732,123 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	99,929,488 - 99,987,108 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	99,816,144 - 99,873,154 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	99,735,633 - 99,792,643	NCBI
Celera	X	100,448,228 - 100,505,895 (-)	NCBI		Celera
Cytogenetic Map	X	q22.1	NCBI
HuRef	X	89,729,520 - 89,785,468 (-)	NCBI		HuRef
CHM1_1	X	99,822,386 - 99,880,040 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	99,116,950 - 99,174,573 (-)	NCBI		T2T-CHM13v2.0

Sytl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	132,837,134 - 132,882,569 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	132,837,134 - 132,882,561 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	133,936,385 - 133,981,821 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	133,936,385 - 133,981,812 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	130,470,924 - 130,516,322 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	129,282,735 - 129,328,133 (-)	NCBI		MGSCv36	mm8
Celera	X	116,812,358 - 116,857,700 (-)	NCBI		Celera
Cytogenetic Map	X	E3	NCBI
cM Map	X	55.47	NCBI

Sytl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	101,428,785 - 101,479,207 (-)	NCBI		GRCr8
mRatBN7.2	X	97,135,496 - 97,185,867 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	97,135,500 - 97,185,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	98,811,171 - 98,836,894 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	102,320,957 - 102,346,675 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	99,824,353 - 99,850,072 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	104,763,961 - 104,814,152 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	104,765,294 - 104,814,145 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	104,598,207 - 104,648,029 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	121,473,414 - 121,499,134 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	121,546,846 - 121,572,567 (-)	NCBI
Celera	X	98,183,387 - 98,209,107 (-)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

Sytl4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955503	6,821,236 - 6,899,983 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955503	6,821,263 - 6,899,983 (-)	NCBI	ChiLan1.0	ChiLan1.0

SYTL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	74,537,937 - 74,617,580 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	74,539,183 - 74,565,753 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	X	75,947,618 - 76,027,046 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	75,946,000 - 76,027,014 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	73,510,069 - 73,589,479 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	75,180,356 - 75,259,782 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	74,941,410 - 75,020,845 (-)	NCBI		UU_Cfam_GSD_1.0

Sytl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	63,607,383 - 63,670,296 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936584	5,884,193 - 5,917,300 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936584	5,882,428 - 5,945,514 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYTL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	82,367,549 - 82,437,401 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	82,367,546 - 82,437,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	90,208,955 - 90,310,119 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYTL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	88,985,495 - 89,041,256 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	88,987,016 - 89,041,194 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	13,915,106 - 13,971,164 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sytl4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624902	1,876,516 - 1,942,265 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624902	1,876,608 - 1,945,728 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008962743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055106322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055106323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055106324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000030166 ⟹ ENSPPAP00000007644

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	X	100,024,434 - 100,051,663 (-)	Ensembl

RefSeq Acc Id:

XM_008962743 ⟹ XP_008960991

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,150 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,744 (-)	NCBI
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI
PanPan1.1	X	100,024,434 - 100,051,663 (-)	NCBI

Sequence:

show sequence

GCAACTCTGGTAGCTCTCCTTGTCTGGTTGTTTTGAAGAAAGAAGAGTAGAAGAAAAAGTTGAG
TAAATCATGTCGGAGTTACTGGACCTTTCTTTTCTGTCTGAGGAGGAAAAGGATTTGATTCTCA
GTGTTCTACAGCGAGATGAGGAGGTCCGGAAAGCAGATGAGAAAAGGATTAGGCGACTAAAGAA
TGAGTTACTGGAGATAAAAAGGAAAGGGGCCAAGAGGGGCAGCCAACACTACAGTGATCGGACC
TGTGCCCGGTGCCAGGAGAGCCTGGGCCGTTTGAGTCCCAAAACCAATACTTGTCGGGGTTGTA
ATCACCTGGTGTGTCGGGACTGCCGCATACAGGAAAGCAATGGTACCTGGAGGTGCAAGGTGTG
CGCCAAGGAAATAGAGTTGAAGAAAGCAACTGGGGACTGGTTTTATGACCAGAAAGTGAATCGC
TTTGCTTACCGCACAGGTAGTGAGATAATCAGGATGTCCCTGCGCCACAAACCTGCAGTGAGTA
AAAGAGAGACAGTGGGACAGTCCCTCCTTCATCAGACACAGATGGGTGACATCTGGCCAGGCAG
AAAGATCATTCAGGAGCGGCAGAAGGAGCCCAGTGTGCTATTTGAAGTGCCAAAGCTGAAAAGT
GGAAAGAGTGCATTGGAAGCTGAGAGTGAGAGTCTGGATAGCTTCACAGCTGACTCGGATAGCA
CCTCCAGGAGAGACTCTCTGGATAAATCTGGCCTCTTTCCAGAATGGAAGAAGATGTCTGCTCC
CAAATCTCAAGTAGAAAAGGAAACTCAGCCTGGAGGTCAAAATGTGGTATTTGTGGATGAGGGT
GAGATGATATTTAAGAAGAACACCAGAAAAATCCTCAGGCCTTCAGAGTACACTAAATCTGTGA
TAGATCTTCGCCCAGAAGATGTGGTACATGAAAGTGGCTCCTTGGGAGACAGAAGCAAATCCGT
CCCAGGCCTCAATGTGGATATGGAAGAGGAAGAAGAAGAAGAAGACATTGACCACCTAGTGAAG
TTACATCGCCAGAAGCTAGCCAGAAGCAGCATGCAAAGTGGCTCCTCCATGAGTACGATCGGCA
GCATGATGAGCATCTACAGTGAAGCTGGTGATTTCGGGAACATCTTTGTGACTGGCAGGATTGC
CTTTTCCCTGAAGTATGAGCAGCAAACCCAGAGTCTGGTTGTCCATGTGAAGGAGTGCCATCAG
CTGGCCTATGCTGATGAAGCCAAGAAGCGCTCTAACCCATATGTGAAGACTTACCTTCTGCCTG
ACAAGTCCCGCCAAGGAAAAAGAAAAACCAGCATCAAGCGGGACACTATTAATCCACTATATGA
TGAGACGCTGAGGTATGAGATCCCAGAATCTCTCCTGGCCCAGAGGACCCTGCAGTTCTCAGTT
TGGCATCATGGTCGTTTTGGCAGAAACACTTTCCTTGGAGAGGCAGAGATCCAGATGGATTCCT
GGAAGCTTGATAAGAAACTGGATCATTGCCTCCCTTTACATGGAAAGATCAGTGCTGAGTCCCC
GACTGGCTTGCCATCACACAAAGGCGAGTTGGTGGTTTCATTGAAATACATCCCAGCCTCCAAA
ACCCCTGTTGGAGGTGACCGGAAAAAGAGTAAAGGTGGGGAAGGGGGAGAGCTCCAGGTGTGGA
TCAAAGAAGCCAAGAACTTGACGGCTGCCAAAGCAGGAGGGACTTCAGACAGCTTTGTCAAGGG
ATACCTCCTTCCCATGAGGAACAAGGCCAGTAAACGTAAAACTCCTGTGATGAAGAAGACCCTG
AATCCTCACTACAACCATACATTTGTCTACAATGGTGTGAGGCTGGAAGATCTACAGCATATGT
GCCTGGAACTGACTGTGTGGGACCGGGAGCCCCTGGCCAGCAATGACTTCCTGGGAGGGGTCAG
GCTGGGTGTTGGCACTGGGATCAGTAATGGGGAAGTGGTGGACTGGATGGACTCGACTGGGGAA
GAAGTGAGCCTGTGGCAGAAGATGCGACAGTACCCAGGGTCTTGGGCAGAAGGGACTCTGCAGC
TCCGTTCCTCAATGGCCAAGCAGAAGCTGGGTTTATGAGTCCCTGTCCTCTTCTGCAGGTCCAG
CCCTGGCGAGGGCAGGTCAGAGGAAGTGAAGAAATCAAGAGCAAAGATTTATAATTTAATGTGT
ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTGTACAAACATGTATTT
TCTGCAAATCTCATTATGCTGGCTAGAGTGATGCAGACTTGTTCTTCTTTTTAAAGCAGTCTCA
AGAATAAGCATTTCTTTAAAATGTTTCTGTGTATAATCTAGTTTATTTTCAGAGTCCATTTTTT
CTTATGTCTTTATAAGGTTTACTTAACTTAAAAACAGCTTTTAAAACAACTTTTTATCTTCTGT
CTTGCTATCATTGTTCCTACTTCCCTAGGAAGCCCTGGCTACCTTTCGCATTAGGACCAGTCTG
GGTTTTAAGGCTCTGGGAAGCAGGGTTGGTTAGTAAAGACAGGAATGTGGGGGAGAGGTGAGTA
GTTCCTTCCTCTTTCTCCTCTCCAATTTATGCTTTTAACTTATTTTCTACCTGGATAAACTTCT
GGAACTTGGCTTTTAAATTTAACTTTTCTAGTTTTTAAGCAGTTTCCACCTTGCTTTGGTCTAA
TGCTTTTCTTTGAAATGCTAACAGAATTCCCAAGCTTTTTCCAGTTCTAGATATCTTTACTAGA
CCTTTGGGGGACTCTTATAATGGAGCTGCTTTCGAAAAGCACTTTAATTAGATAATGTATTTTG
ACTAAATCACGAGGATGCCCAGTGAGAGCTTCTAGCTGATCTCAGAGGACCAGAGTGACTGAGG
GTAAAGTGTCTCACAGCCCATGCTGAATTTTCTGCATTTTAAACTGATACTGCAGTCATTGGAG
AGAGAGCTCCTCATTTCTCGAATGAAAGATGAGATATATTCATCCTCATGTACCACATCTGTCT
TAGTGTTTGCGTCTGGGGTGTGTTATCAAACAGAGCATGGTCTACATCCCACTGTGTCAACCAG
AATAACCAAGTGTTATCTCAATTGGCCCAGTGTTTCTCCAGGCTGGGGACTGTTAAGGGCTCTA
AGGGAATGTAGACAGAGTCTCCCTGTTATTCTGACTTCCTGCTTGATGAGCTTTCAGTTCCTGT
TTTTGCTATTGTTTCCCAAATTTGACCTACATATTACATGGGTGTAGTGTGTTGAGGCTTTTCA
AAGAAGGGTCTAGTGAGCTAAGTTTCATCTTCTGGTATTCATTGATCCAAACTGACCTTTCTAT
TCTCATAAGCGTTTCTACCCAAAGTTGTGTGTGGAAGGAGTGTATAGCAGAGAGGAAATCCCTT
TCAACAGAGTCAGCTGCTAACTGATTTCCTATAAGCACACTGGATTAAGGGCAGCTACAGTGGT
TTCTACTGTATGTATGAACCGAATGGAGGAATGTTTTCAAAGATTGATTTGGTGTGGATTGCAA
TTGTAATGGAAGGCGTAACTTGGGATCCCGGGCTGTAACTTGCTCTTTTGTTTCCCACCCCCCT
GACATGTATGTGTGCTTTAATAAAGCTTTCTCACTTGTCAAA

hide sequence

RefSeq Acc Id:

XM_034949654 ⟹ XP_034805545

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,121 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,744 (-)	NCBI
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI

RefSeq Acc Id:

XM_034949655 ⟹ XP_034805546

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,146 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,744 (-)	NCBI
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI

RefSeq Acc Id:

XM_034949656 ⟹ XP_034805547

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,150 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,747 (-)	NCBI
Mhudiblu_PPA_v0	X	89,885,483 - 89,941,381 (-)	NCBI

RefSeq Acc Id:

XM_034949657 ⟹ XP_034805548

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,151 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,743 (-)	NCBI
Mhudiblu_PPA_v0	X	89,885,478 - 89,941,381 (-)	NCBI

RefSeq Acc Id:

XM_055106322 ⟹ XP_054962297

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,139 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,744 (-)	NCBI

RefSeq Acc Id:

XM_055106323 ⟹ XP_054962298

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,338,146 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,341,747 (-)	NCBI

RefSeq Acc Id:

XM_055106324 ⟹ XP_054962299

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	100,279,112 - 100,317,371 (-)	NCBI
NHGRI_mPanPan1	X	100,285,847 - 100,319,734 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008960991	(Get FASTA)	NCBI Sequence Viewer
	XP_034805545	(Get FASTA)	NCBI Sequence Viewer
	XP_034805546	(Get FASTA)	NCBI Sequence Viewer
	XP_034805547	(Get FASTA)	NCBI Sequence Viewer
	XP_034805548	(Get FASTA)	NCBI Sequence Viewer
	XP_054962297	(Get FASTA)	NCBI Sequence Viewer
	XP_054962298	(Get FASTA)	NCBI Sequence Viewer
	XP_054962299	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000007644
	ENSPPAP00000007644.1

RefSeq Acc Id:

XP_008960991 ⟸ XM_008962743

- UniProtKB:

A0A2R8ZUW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSELLDLSFLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCA
RCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCAKEIELKKATGDWFYDQKVNRFA
YRTGSEIIRMSLRHKPAVSKRETVGQSLLHQTQMGDIWPGRKIIQERQKEPSVLFEVPKLKSGK
SALEAESESLDSFTADSDSTSRRDSLDKSGLFPEWKKMSAPKSQVEKETQPGGQNVVFVDEGEM
IFKKNTRKILRPSEYTKSVIDLRPEDVVHESGSLGDRSKSVPGLNVDMEEEEEEEDIDHLVKLH
RQKLARSSMQSGSSMSTIGSMMSIYSEAGDFGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLA
YADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTINPLYDETLRYEIPESLLAQRTLQFSVWH
HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESPTGLPSHKGELVVSLKYIPASKTP
VGGDRKKSKGGEGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNP
HYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTGEEV
SLWQKMRQYPGSWAEGTLQLRSSMAKQKLGL

hide sequence

RefSeq Acc Id:	XP_034805548 ⟸ XM_034949657
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034805546 ⟸ XM_034949655
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034805545 ⟸ XM_034949654
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034805547 ⟸ XM_034949656
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000007644 ⟸ ENSPPAT00000030166

RefSeq Acc Id:	XP_054962298 ⟸ XM_055106323
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054962297 ⟸ XM_055106322
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054962299 ⟸ XM_055106324
- UniProtKB:	A0A2R8ZUW0 (UniProtKB/TrEMBL)

Protein Domains

C2 RabBD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000026955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000030166.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	FYVE_2	UniProtKB/TrEMBL
	FYVE_Slp4	UniProtKB/TrEMBL
	Rab_BD	UniProtKB/TrEMBL
	SLP-4/5_C2A	UniProtKB/TrEMBL
	Synaptotagmin	UniProtKB/TrEMBL
	SYTL1-5_C2B	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	pps:100985840	UniProtKB/TrEMBL
NCBI Gene	SYTL4	ENTREZGENE
PANTHER	BITESIZE, ISOFORM I	UniProtKB/TrEMBL
	PTHR45716:SF4	UniProtKB/TrEMBL
Pfam	FYVE_2	UniProtKB/TrEMBL
	PF00168	UniProtKB/TrEMBL
PRINTS	SYNAPTOTAGMN	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
	RABBD	UniProtKB/TrEMBL
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
	SSF57903	UniProtKB/TrEMBL
UniProt	A0A2R8ZUW0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar