TRPV2 (transient receptor potential cation channel subfamily V member 2) - Rat Genome Database

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Gene: TRPV2 (transient receptor potential cation channel subfamily V member 2) Pan paniscus
Analyze
Symbol: TRPV2
Name: transient receptor potential cation channel subfamily V member 2
RGD ID: 11777615
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); negative regulation of cell population proliferation (ortholog); response to temperature stimulus (ortholog); ASSOCIATED WITH Endometrial Neoplasms (ortholog); Experimental Arthritis (ortholog); genetic disease (ortholog); FOUND IN endomembrane system (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100988217; putative uncharacterized protein LRRC75A-AS1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,184,883 - 56,211,452 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,001,608 - 61,023,202 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,329,283 - 35,350,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,620,793 - 110,642,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,620,793 - 110,642,926 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRPV2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,184,883 - 56,211,452 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,001,608 - 61,023,202 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,329,283 - 35,350,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,620,793 - 110,642,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,620,793 - 110,642,926 (+)Ensemblpanpan1.1panPan2
TRPV2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,415,571 - 16,437,003 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,415,571 - 16,437,003 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,318,885 - 16,340,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,259,613 - 16,281,042 (+)NCBINCBI36Build 36hg18NCBI36
Build 341716,259,612 - 16,281,040NCBI
Celera1716,221,759 - 16,243,216 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,185,329 - 16,206,779 (+)NCBIHuRef
CHM1_11716,328,475 - 16,349,923 (+)NCBICHM1_1
T2T-CHM13v2.01716,317,872 - 16,339,304 (+)NCBIT2T-CHM13v2.0
Trpv2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,465,312 - 62,491,131 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,465,312 - 62,491,341 (+)EnsemblGRCm39 Ensembl
GRCm381162,574,486 - 62,600,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,574,486 - 62,600,515 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,387,988 - 62,413,807 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,390,733 - 62,416,491 (+)NCBIMGSCv36mm8
Celera1169,494,115 - 69,519,933 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.48NCBI
Trpv2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,772,223 - 47,797,956 (+)NCBIGRCr8
mRatBN7.21047,265,524 - 47,294,263 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,272,931 - 47,294,260 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,975,970 - 51,997,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,466,516 - 51,487,799 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,969,925 - 46,991,212 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,903,540 - 48,925,036 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,903,540 - 48,925,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,686,500 - 48,707,996 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,764,894 - 48,786,150 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,778,506 - 48,799,767 (+)NCBI
Celera1046,520,118 - 46,541,280 (+)NCBICelera
Cytogenetic Map10q23NCBI
TRPV2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,488,155 - 39,512,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,491,484 - 39,509,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,632,760 - 39,656,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,596,549 - 39,620,384 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,600,757 - 39,620,349 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,568,532 - 39,592,119 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,513,796 - 39,537,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,705,961 - 39,729,555 (-)NCBIUU_Cfam_GSD_1.0
Trpv2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,586,614 - 59,613,898 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821198,098 - 226,025 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821198,622 - 225,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,135,329 - 59,152,228 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,132,529 - 59,152,633 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,259,257 - 62,278,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPV2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,226,276 - 15,246,488 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,225,554 - 15,244,364 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,726,313 - 5,748,264 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,016,973 - 4,034,495 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,016,964 - 4,034,522 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000058256   ⟹   ENSPPAP00000035368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A110,620,793 - 110,642,926 (+)Ensembl
RefSeq Acc Id: XM_055101238   ⟹   XP_054957213
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,184,883 - 56,211,421 (-)NCBI
NHGRI_mPanPan11761,001,608 - 61,023,119 (-)NCBI
RefSeq Acc Id: XM_063598712   ⟹   XP_063454782
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,184,883 - 56,211,452 (-)NCBI
RefSeq Acc Id: XM_063598713   ⟹   XP_063454783
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,184,883 - 56,211,422 (-)NCBI
RefSeq Acc Id: XM_063598714   ⟹   XP_063454784
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,184,883 - 56,211,444 (-)NCBI
RefSeq Acc Id: XM_063598715   ⟹   XP_063454785
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,184,883 - 56,211,434 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054957213 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454783 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000035368.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000035368   ⟸   ENSPPAT00000058256
RefSeq Acc Id: XP_054957213   ⟸   XM_055101238
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454782   ⟸   XM_063598712
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063454784   ⟸   XM_063598714
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063454785   ⟸   XM_063598715
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063454783   ⟸   XM_063598713
- Peptide Label: isoform X3
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040502 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058256.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRPV UniProtKB/TrEMBL
  TRPV1-4_channel UniProtKB/TrEMBL
NCBI Gene TRPV2 ENTREZGENE
PANTHER PTHR10582 UniProtKB/TrEMBL
  PTHR10582:SF5 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS TRPVRECEPTOR UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A2R9C0A8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-14 TRPV2  transient receptor potential cation channel subfamily V member 2  LOC100988217  putative uncharacterized protein LRRC75A-AS1, mitochondrial  Data Merged 737654 PROVISIONAL