RBM8A (RNA binding motif protein 8A) - Rat Genome Database

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Gene: RBM8A (RNA binding motif protein 8A) Pan paniscus
Analyze
Symbol: RBM8A
Name: RNA binding motif protein 8A
RGD ID: 11773382
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); mRNA transport (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); exon-exon junction complex (ortholog); exon-exon junction subcomplex mago-y14 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 8A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,319,979 - 103,321,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,908,347 - 102,910,153 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,830,424 - 121,836,378 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,834,110 - 113,839,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,834,110 - 113,839,429 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,319,979 - 103,321,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,908,347 - 102,910,153 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,830,424 - 121,836,378 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,834,110 - 113,839,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,834,110 - 113,839,429 (-)Ensemblpanpan1.1panPan2
RBM8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,921,556 - 145,927,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,921,556 - 145,927,678 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,507,609 - 145,513,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,218,995 - 144,222,801 (+)NCBINCBI36Build 36hg18NCBI36
Build 341142,996,681 - 143,000,488NCBI
Celera1119,710,991 - 119,714,797 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,471,247 - 119,477,227 (+)NCBIHuRef
CHM1_11147,289,682 - 147,295,662 (-)NCBICHM1_1
T2T-CHM13v2.01145,038,375 - 145,044,303 (-)NCBIT2T-CHM13v2.0
Rbm8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,537,244 - 96,541,107 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,537,249 - 96,541,107 (+)EnsemblGRCm39 Ensembl
GRCm38396,629,928 - 96,633,791 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,629,933 - 96,633,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,433,851 - 96,437,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,715,338 - 96,718,315 (+)NCBIMGSCv36mm8
Celera398,036,943 - 98,040,803 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.93NCBI
Rbm8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,854,018 - 186,856,802 (+)NCBIGRCr8
mRatBN7.22184,165,189 - 184,167,959 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,165,193 - 184,167,959 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,836,736 - 191,839,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,629,548 - 189,632,424 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,469,293 - 184,472,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,755,261 - 198,758,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,755,262 - 198,758,028 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,242,195 - 218,244,962 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,429,805 - 191,432,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,392,562 - 191,394,768 (+)NCBI
Celera2176,690,271 - 176,693,037 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rbm8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568164,050 - 166,162 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568164,050 - 166,162 (+)NCBIChiLan1.0ChiLan1.0
RBM8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,722,449 - 58,726,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,724,227 - 58,725,969 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,190,496 - 58,194,070 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,719,316 - 59,722,888 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,717,932 - 59,722,853 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,592,052 - 58,595,627 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,653,189 - 58,656,764 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,379,610 - 59,383,186 (-)NCBIUU_Cfam_GSD_1.0
Rbm8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,790,095 - 20,791,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867666,199 - 667,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867666,208 - 667,851 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,408,466 - 99,413,492 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,408,422 - 99,411,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,051,095 - 109,052,810 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM8A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,819,891 - 12,821,656 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,819,956 - 12,821,629 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,498,984 - 15,502,718 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm8a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,286,957 - 17,295,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,286,950 - 17,289,143 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034501   ⟹   ENSPPAP00000011841
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1113,834,110 - 113,839,429 (-)Ensembl
RefSeq Acc Id: XM_003806189   ⟹   XP_003806237
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21103,319,979 - 103,321,745 (-)NCBI
NHGRI_mPanPan11102,908,347 - 102,910,127 (-)NCBI
Mhudiblu_PPA_v01121,830,425 - 121,836,378 (+)NCBI
PanPan1.11113,834,110 - 113,839,429 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008951022   ⟹   XP_008949270
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21103,319,979 - 103,321,749 (-)NCBI
NHGRI_mPanPan11102,908,347 - 102,910,153 (-)NCBI
Mhudiblu_PPA_v01121,830,424 - 121,832,221 (+)NCBI
PanPan1.11113,834,110 - 113,839,393 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003806237 (Get FASTA)   NCBI Sequence Viewer  
  XP_008949270 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011841
  ENSPPAP00000011841.1
Reference Protein Sequences
RefSeq Acc Id: XP_003806237   ⟸   XM_003806189
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A8V1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008949270   ⟸   XM_008951022
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000011841   ⟸   ENSPPAT00000034501
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029116 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034501.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RNA-bd_8 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_RBM8 UniProtKB/TrEMBL
KEGG Report pps:100994309 UniProtKB/TrEMBL
NCBI Gene RBM8A ENTREZGENE
PANTHER PTHR45894 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 8A UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PRINTS RNABINDINGM8 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R9A8V1 ENTREZGENE, UniProtKB/TrEMBL