COLQ (collagen like tail subunit of asymmetric acetylcholinesterase) - Rat Genome Database

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Gene: COLQ (collagen like tail subunit of asymmetric acetylcholinesterase) Pan paniscus
Analyze
Symbol: COLQ
Name: collagen like tail subunit of asymmetric acetylcholinesterase
RGD ID: 11740753
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); regulation of synaptic assembly at neuromuscular junction (ortholog); skeletal muscle acetylcholine-gated channel clustering (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); biotinidase deficiency (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN cell junction (inferred); collagen trimer (inferred); collagen type IV trimer (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetylcholinesterase collagenic tail peptide
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,430,081 - 15,506,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,434,653 - 15,511,662 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,373,589 - 15,447,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,712,630 - 15,784,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,712,630 - 15,784,299 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
COLQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,430,081 - 15,506,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,434,653 - 15,511,662 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,373,589 - 15,447,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,712,630 - 15,784,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,712,630 - 15,784,299 (-)Ensemblpanpan1.1panPan2
COLQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,450,133 - 15,521,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,450,133 - 15,521,751 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,491,640 - 15,563,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,466,644 - 15,538,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,466,644 - 15,538,262NCBI
Celera315,429,870 - 15,501,486 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,426,974 - 15,498,632 (-)NCBIHuRef
CHM1_1315,442,518 - 15,514,124 (-)NCBICHM1_1
T2T-CHM13v2.0315,452,540 - 15,524,108 (-)NCBIT2T-CHM13v2.0
Colq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,245,039 - 31,299,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,245,039 - 31,313,300 (-)EnsemblGRCm39 Ensembl
GRCm381431,523,082 - 31,577,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,523,082 - 31,591,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,336,270 - 32,390,569 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,352,091 - 30,406,392 (-)NCBIMGSCv36mm8
Celera1427,782,091 - 27,835,024 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.18NCBI
Colq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,738,251 - 6,830,492 (-)NCBIGRCr8
mRatBN7.2166,731,850 - 6,824,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,731,858 - 6,787,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,744,228 - 6,799,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,889,123 - 7,944,453 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,751,954 - 6,807,065 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,626,380 - 7,681,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,627,603 - 7,681,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,553,135 - 7,608,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,975,587 - 7,035,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,975,584 - 7,034,999 (-)NCBI
Celera168,403,494 - 8,458,629 (+)NCBICelera
Cytogenetic Map16p16NCBI
Colq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,956,375 - 2,019,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBIChiLan1.0ChiLan1.0
Colq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,757,170 - 169,802,383 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,877,568 - 2,939,840 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,877,543 - 2,941,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COLQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,677,738 - 2,755,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,604,003 - 2,681,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COLQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,284,557 - 60,395,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604133,316,392 - 33,386,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Colq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,163,506 - 5,222,134 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,162,989 - 5,222,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039829   ⟹   ENSPPAP00000017130
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,712,630 - 15,784,299 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039836   ⟹   ENSPPAP00000017136
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,714,139 - 15,784,156 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039839   ⟹   ENSPPAP00000017139
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,714,139 - 15,761,061 (-)Ensembl
RefSeq Acc Id: XM_003826205   ⟹   XP_003826253
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,435,283 - 15,506,898 (-)NCBI
NHGRI_mPanPan1315,440,047 - 15,511,662 (-)NCBI
Mhudiblu_PPA_v0315,376,093 - 15,447,612 (-)NCBI
PanPan1.1315,712,630 - 15,784,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034955902   ⟹   XP_034811793
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,435,283 - 15,506,898 (-)NCBI
NHGRI_mPanPan1315,440,047 - 15,511,662 (-)NCBI
Mhudiblu_PPA_v0315,376,093 - 15,447,613 (-)NCBI
RefSeq Acc Id: XM_034955903   ⟹   XP_034811794
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,435,283 - 15,484,026 (-)NCBI
NHGRI_mPanPan1315,440,047 - 15,488,796 (-)NCBI
Mhudiblu_PPA_v0315,376,093 - 15,424,529 (-)NCBI
RefSeq Acc Id: XR_004670460
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,430,081 - 15,506,878 (-)NCBI
NHGRI_mPanPan1315,434,653 - 15,511,634 (-)NCBI
Mhudiblu_PPA_v0315,373,589 - 15,447,493 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003826253 (Get FASTA)   NCBI Sequence Viewer  
  XP_034811793 (Get FASTA)   NCBI Sequence Viewer  
  XP_034811794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017130
  ENSPPAP00000017130.1
  ENSPPAP00000017136.1
  ENSPPAP00000017139.1
Reference Protein Sequences
RefSeq Acc Id: XP_003826253   ⟸   XM_003826205
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AN75 (UniProtKB/TrEMBL),   A0A2R9AIE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034811793   ⟸   XM_034955902
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AIE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034811794   ⟸   XM_034955903
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AQI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000017139   ⟸   ENSPPAT00000039839
RefSeq Acc Id: ENSPPAP00000017136   ⟸   ENSPPAT00000039836
RefSeq Acc Id: ENSPPAP00000017130   ⟸   ENSPPAT00000039829


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031635 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039829.1 UniProtKB/TrEMBL
  ENSPPAT00000039836.1 UniProtKB/TrEMBL
  ENSPPAT00000039839.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Myxo_disulph_rpt UniProtKB/TrEMBL
KEGG Report pps:100983143 UniProtKB/TrEMBL
NCBI Gene COLQ ENTREZGENE
PANTHER ACETYLCHOLINESTERASE COLLAGENIC TAIL PEPTIDE UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
  ENDOSTATIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
UniProt A0A2R9AIE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AN75 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AQI8 ENTREZGENE, UniProtKB/TrEMBL