CHKB (choline kinase beta) - Rat Genome Database

Name: CHKB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CHKB (choline kinase beta) Pan paniscus

Analyze

Symbol:

CHKB

Name:

choline kinase beta

RGD ID:

11725506

Description:

ENCODES a protein that exhibits choline kinase activity (ortholog); INVOLVED IN CDP-choline pathway (inferred); muscle organ development (inferred); phosphatidylcholine biosynthetic process (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

choline/ethanolamine kinase

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHKB (choline kinase beta)	NCBI	Ortholog
Mus musculus (house mouse):	Gm44502 (predicted readthrough transcript (NMD candidate), 44502)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Chkb (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chkb (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHKB (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chkb (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHKB (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHKB (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chkb (choline kinase beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	60,498,901 - 60,502,784 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	63,189,483 - 63,193,549 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,825,128 - 30,829,203 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,936,470 - 49,940,625 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,936,470 - 49,940,625 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 22q13 duplication syndrome (ISO)

congenital disorder of glycosylation Ig (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

megaconial type congenital muscular dystrophy (ISO)

metachromatic leukodystrophy (ISO)

muscular dystrophy (ISO)

narcolepsy (ISO)

Phelan-McDermid syndrome (ISO)

recurrent hypersomnia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CDP-choline pathway (IEA)

muscle organ development (IEA)

phosphatidylcholine biosynthetic process (IEA)

phosphatidylethanolamine biosynthetic process (IEA)

Cellular Component

cytoplasm (IEA)

Molecular Function

choline kinase activity (IEA,ISO)

ethanolamine kinase activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CHKB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	60,498,901 - 60,502,784 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	63,189,483 - 63,193,549 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,825,128 - 30,829,203 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,936,470 - 49,940,625 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,936,470 - 49,940,625 (-)	Ensembl	panpan1.1		panPan2

CHKB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	50,578,963 - 50,582,849 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	50,578,959 - 50,601,455 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	51,017,392 - 51,021,278 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	49,364,253 - 49,368,260 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	34,893,420 - 34,897,461 (-)	NCBI		Celera
Cytogenetic Map	22	q13.33	NCBI
HuRef	22	33,908,386 - 33,912,427 (-)	NCBI		HuRef
CHM1_1	22	50,976,120 - 50,980,161 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	51,089,491 - 51,093,377 (-)	NCBI		T2T-CHM13v2.0

Gm44502
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	89,300,608 - 89,314,130 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	89,300,608 - 89,313,899 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	89,416,405 - 89,429,927 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	89,416,405 - 89,429,696 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	89,246,836 - 89,260,127 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	15	91,545,496 - 91,558,759 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	44.89	NCBI

Chkb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,380,592 - 122,385,102 (-)	NCBI		GRCr8
mRatBN7.2	7	120,500,960 - 120,504,359 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,500,984 - 120,504,461 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	122,252,940 - 122,256,295 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,479,088 - 124,482,443 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,441,149 - 124,444,504 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,404,818 - 130,408,813 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,404,832 - 130,408,187 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	130,089,639 - 130,093,008 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,746,749 - 127,750,104 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	127,780,978 - 127,784,334 (-)	NCBI
Celera	7	116,973,588 - 116,976,943 (-)	NCBI		Celera
RH 3.4 Map	7	949.5	RGD
Cytogenetic Map	7	q34	NCBI

Chkb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	33,588,600 - 33,591,758 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	33,588,375 - 33,592,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHKB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	16,733,071 - 16,736,797 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	16,733,095 - 16,736,758 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	16,710,701 - 16,714,430 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	17,459,391 - 17,463,120 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	17,459,328 - 17,463,931 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	17,183,779 - 17,187,508 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	17,506,808 - 17,510,537 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	17,638,970 - 17,642,699 (+)	NCBI		UU_Cfam_GSD_1.0

Chkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	242,891 - 246,731 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	243,095 - 247,093 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	242,876 - 246,806 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHKB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	151,638 - 155,176 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	151,638 - 155,176 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CHKB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	33,055,296 - 33,059,442 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	33,055,294 - 33,059,230 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	92,282,539 - 92,286,806 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chkb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	187,956 - 191,137 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	187,544 - 191,330 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003804590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008961486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004668600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_610263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000031544 ⟹ ENSPPAP00000008904

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	49,936,470 - 49,940,625 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000031550 ⟹ ENSPPAP00000008910

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	49,936,689 - 49,940,290 (-)	Ensembl

RefSeq Acc Id:

XM_003804590 ⟹ XP_003804638

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	60,498,901 - 60,502,784 (-)	NCBI
NHGRI_mPanPan1	22	63,189,483 - 63,193,549 (-)	NCBI
Mhudiblu_PPA_v0	22	30,825,128 - 30,829,203 (-)	NCBI
PanPan1.1	22	49,936,470 - 49,940,625 (-)	NCBI

Sequence:

show sequence

GCACGCGCCGCTCCGCCACCTGATTGGCCTCCGGCGCCTCGGATTGGCCCAGGCCGTCCAACAG
CAGCCCCGCCCAGAGAGAGACCATTGGTCCTTGCCCATAGGGGCGGGGCCCGGCAGAGATCTGC
GGAATTCGGCCTTCGGAAAGAGCCCCGGGCCGGGGCACGGAGAGAGCCGAGCGCCGCAGCCGTG
AGCCGAATAGAGCCGGAGAGACCCGAGTATGACCGGAGAAGCCCAGGCCGGCCGGAAGAGGAGC
CGAGCGCTGCCGGAAGGAACCGAGCCCGTCCGAAGGGAGCGGAGAGCAGCCTGGCCTGGGGCCC
GGTCGAGCCCGCGCCATGGCGGCCGAGGGGACAGCTGTGGCCGGAAGCGGGGCTGTTGGCGGCT
GCCTGGCCAAAGACGGCTTGCAGCAGTCTAAGTGCCCGGACACTACCCCAAAACGGCGGCGCGC
CTCGTCGCTGTCGCGTGACGCCGAGCGCCGAGCCTACCAATGGTGCCGGGAGTACTTGGGCGGG
GCCTGGCGCCGAGTGCAGCCCGAGGAGCTGAGGGTTTACCCCGTGAGCGGAGGCCTCAGCAACC
TGCTCTTCCGCTGCTCGCTCCCGGACCACCTGCCCAGCGTTGGCGAGGAGCCCCGGGAGGTGCT
CCTGCGGCTGTACGGAGCCATCTTGCAGGGCGTGGACTCCCTGGTGCTAGAAAGCGTGATGTTC
GCCATCCTTGCGGAGCGGTCGCTGGGGCCCCAGCTGTACGGAGTCTTCCCAGAGGGCCGGCTGG
AACAGTACATCCCAAGTCGGCCATTGAAAACTCAAGAGCTTCGAGAGCCAGTGTTGTCAGCAGC
CATTGCCACGAAGATGGCGCAATTTCATGGCATGGAGATGCCTTTCACCAAGGAGCCCCACTGG
CTGTTTGGGACCATGGAGCGGTACCTAAAACAGATCCAGGACCTGCCCCCAACTGGCCTCCCTG
AGATGAACCTGCTGGAGATGTACAGCCTGAAGGATGAGATGGGCAACCTCAGGAAGTTACTAGA
GTCTACCCCATCGCCAGTTGTCTTCTGCCACAATGACATCCAGGAAGGGAACATCTTGCTGCTC
TCAGAGCCAGAAAATGCTGACAGCCTCATGCTGGTGGACTTCGAGTACAGCAGTTATAACTATA
GGGGCTTTGACATTGGGAACCATTTTTGTGAGTGGGTTTATGATTATACTCACGAGGAATGGCC
TTTCTACAAAGCAAGGCCCACAGACTACCCCACTCAAGAACAGCAGTTGCATTTTATTCGTCAT
TACCTGGCAGAGGCAAAGAAAGGTGAGACCCTCTCCCAAGAGGAGCAGAGAAAACTGGAAGAAG
ATTTGCTGGTAGAAGTCAGTCGGTATGCTCTGGCATCCCATTTCTTCTGGGGTCTGTGGTCCAT
CCTCCAGGCATCCATGTCCACCATAGAATTTGGTTACTTGGACTATGCCCAGTCTCGGTTCCAG
TTCTACTTCCAGCAGAAGGGGCAGCTGACCAGTGTCCACTCCTCATCCTGACTCCACCCTCCCA
CTCCTTGGATTTCTCCTGGAGCCTCCAGGGCAGGACCTTGGAGGGAGGAACAACGAGCAGAAGG
CCCTGGCGACCGGGCTGAGCCCCCAAGTGAAACTGAGGTTCAGGAGACCGGCCTGTCCCTGAGT
TTGAGTAGGTCCCCATGGCTGGCAGGCCAGAGCCCCGTGCTGTGTATGTAACACAATAAACAAG
CTTCTTCTTCGCAC

hide sequence

RefSeq Acc Id:

XM_008961486 ⟹ XP_008959734

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	60,498,901 - 60,502,723 (-)	NCBI
NHGRI_mPanPan1	22	63,189,483 - 63,193,549 (-)	NCBI
Mhudiblu_PPA_v0	22	30,825,128 - 30,829,203 (-)	NCBI
PanPan1.1	22	49,936,470 - 49,940,625 (-)	NCBI

Sequence:

show sequence

GCACGCGCCGCTCCGCCACCTGATTGGCCTCCGGCGCCTCGGATTGGCCCAGGCCGTCCAACAG
CAGCCCCGCCCAGAGAGAGACCATTGGTCCTTGCCCATAGGGGCGGGGCCCGGCAGAGATCTGC
GGAATTCGGCCTTCGGAAAGAGCCCCGGGCCGGGGCACGGAGAGAGCCGAGCGCCGCAGCCGTG
AGCCGAATAGAGCCGGAGAGACCCGAGTATGACCGGAGAAGCCCAGGCCGGCCGGAAGAGGAGC
CGAGCGCTGCCGGAAGGAACCGAGCCCGTCCGAAGGGAGCGGAGAGCAGCCTGGCCTGGGGCCC
GGTCGAGCCCGCGCCATGGCGGCCGAGGGGACAGCTGTGGCCGGAAGCGGGGCTGTTGGCGGCT
GCCTGGCCAAAGACGGCTTGCAGCAGTCTAAGTGCCCGGACACTACCCCAAAACGGCGGCGCGC
CTCGTCGCTGTCGCGTGACGCCGAGCGCCGAGCCTACCAATGGTGCCGGGAGTACTTGGGCGGG
GCCTGGCGCCGAGTGCAGCCCGAGGAGCTGAGGGTTTACCCCGTGAGCGGAGGCCTCAGCAACC
TGCTCTTCCGCTGCTCGCTCCCGGACCACCTGCCCAGCGTTGGCGAGGAGCCCCGGGAGGTGCT
CCTGCGGCTGTACGGAGCCATCTTGCAGGGCGTGGACTCCCTGGTGCTAGAAAGCGTGATGTTC
GCCATCCTTGCGGAGCGGTCGCTGGGGCCCCAGCTGTACGGAGTCTTCCCAGAGGGCCGGCTGG
AACAGTACATCCCAAGTCGGCCATTGAAAACTCAAGAGCTTCGAGAGCCAGTGTTGTCAGCAGC
CATTGCCACGAAGATGGCGCAATTTCATGGCATGGAGATGCCTTTCACCAAGGAGCCCCACTGG
CTGTTTGGGACCATGGAGCGGTACCTAAAACAGATCCAGGACCTGCCCCCAACTGGCCTCCCTG
AGATGAACCTGCTGGAGATGTACAGCCTGAAGGATGAGATGGGCAACCTCAGGAAGTTACTAGA
GTCTACCCCATCGCCAGTTGTCTTCTGCCACAATGACATCCAGGAAGGTAGGAGAAGGCATCTG
AGTCTCCTAACCCAAGATGGAAGAGCCAGAGGGCTCTGGAGTGAGCAGAACCTCACCCCATTCC
CCCAGGGAACATCTTGCTGCTCTCAGAGCCAGAAAATGCTGACAGCCTCATGCTGGTGGACTTC
GAGTACAGCAGTTATAACTATAGAGGCAAAGAAAGGTGAGACCCTCTCCCAAGAGGAGCAGAGA
AAACTGGAAGAAGATTTGCTGGTAGAAGTCAGTCGGTATGCTCTGGCATCCCATTTCTTCTGGG
GTCTGTGGTCCATCCTCCAGGCATCCATGTCCACCATAGAATTTGGTTACTTGGACTATGCCCA
GTCTCGGTTCCAGTTCTACTTCCAGCAGAAGGGGCAGCTGACCAGTGTCCACTCCTCATCCTGA
CTCCACCCTCCCACTCCTTGGATTTCTCCTGGAGCCTCCAGGGCAGGACCTTGGAGGGAGGAAC
AACGAGCAGAAGGCCCTGGCGACCGGGCTGAGCCCCCAAGTGAAACTGAGGTTCAGGAGACCGG
CCTGTCCCTGAGTTTGAGTAGGTCCCCATGGCTGGCAGGCCAGAGCCCCGTGCTGTGTATGTAA
CACAATAAACAAGCTTCTTCTTCGCAC

hide sequence

RefSeq Acc Id:

XR_004668600

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	60,499,364 - 60,502,723 (-)	NCBI
NHGRI_mPanPan1	22	63,189,946 - 63,193,549 (-)	NCBI
Mhudiblu_PPA_v0	22	30,825,591 - 30,829,203 (-)	NCBI

RefSeq Acc Id:

XR_610263

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	60,499,137 - 60,502,723 (-)	NCBI
NHGRI_mPanPan1	22	63,189,718 - 63,193,549 (-)	NCBI
Mhudiblu_PPA_v0	22	30,825,361 - 30,829,203 (-)	NCBI
PanPan1.1	22	49,936,470 - 49,940,625 (-)	NCBI

Sequence:

show sequence

GCACGCGCCGCTCCGCCACCTGATTGGCCTCCGGCGCCTCGGATTGGCCCAGGCCGTCCAACAG
CAGCCCCGCCCAGAGAGAGACCATTGGTCCTTGCCCATAGGGGCGGGGCCCGGCAGAGATCTGC
GGAATTCGGCCTTCGGAAAGAGCCCCGGGCCGGGGCACGGAGAGAGCCGAGCGCCGCAGCCGTG
AGCCGAATAGAGCCGGAGAGACCCGAGTATGACCGGAGAAGCCCAGGCCGGCCGGAAGAGGAGC
CGAGCGCTGCCGGAAGGAACCGAGCCCGTCCGAAGGGAGCGGAGAGCAGCCTGGCCTGGGGCCC
GGTCGAGCCCGCGCCATGGCGGCCGAGGGGACAGCTGTGGCCGGAAGCGGGGCTGTTGGCGGCT
GCCTGGCCAAAGACGGCTTGCAGCAGTCTAAGTGCCCGGACACTACCCCAAAACGGCGGCGCGC
CTCGTCGCTGTCGCGTGACGCCGAGCGCCGAGCCTACCAATGGTGCCGGGAGTACTTGGGCGGG
GCCTGGCGCCGAGTGCAGCCCGAGGAGCTGAGGGTTTACCCCGTGAGCGGAGGCCTCAGCAACC
TGCTCTTCCGCTGCTCGCTCCCGGACCACCTGCCCAGCGTTGGCGAGGAGCCCCGGGAGGTGCT
CCTGCGGCTGTACGGAGCCATCTTGCAGGGCGTGGACTCCCTGGTGCTAGAAAGCGTGATGTTC
GCCATCCTTGCGGAGCGGTCGCTGGGGCCCCAGCTGTACGGAGTCTTCCCAGAGGGCCGGCTGG
AACAGTACATCCCAAGTCGGCCATTGAAAACTCAAGAGCTTCGAGAGCCAGTGTTGTCAGCAGC
CATTGCCACGAAGATGGCGCAATTTCATGGCATGGAGATGCCTTTCACCAAGGAGCCCCACTGG
CTGTTTGGGACCATGGAGCGGTACCTAAAACAGATCCAGGACCTGCCCCCAACTGGCCTCCCTG
AGATGAACCTGCTGGAGATGTACAGCCTGAAGGATGAGATGGGCAACCTCAGGAAGTTACTAGA
GTCTACCCCATCGCCAGTTGTCTTCTGCCACAATGACATCCAGGAAGGGAACATCTTGCTGCTC
TCAGAGCCAGAAAATGCTGACAGCCTCATGCTGGTGGACTTCGAGTACAGCAGTTATAACTATA
GGGGCTTTGACATTGGGAACCATTTTTGTGAGTGGGTTTATGATTATACTCACGAGGAATGGCC
TTTCTACAAAGCAAGGCCCACAGACTACCCCACTCAAGAACAGCAGAGGCAAAGAAAGGTGAGA
CCCTCTCCCAAGAGGAGCAGAGAAAACTGGAAGAAGATTTGCTGGTAGAAGTCAGTCGGTATGC
TCTGGCATCCCATTTCTTCTGGGGTCTGTGGTCCATCCTCCAGGCATCCATGTCCACCATAGAA
TTTGGTTACTTGGACTATGCCCAGTCTCGGTTCCAGTTCTACTTCCAGCAGAAGGGGCAGCTGA
CCAGTGTCCACTCCTCATCCTGACTCCACCCTCCCACTCCTTGGATTTCTCCTGGAGCCTCCAG
GGCAGGACCTTGGAGGGAGGAACAACGAGCAGAAGGCCCTGGCGACCGGGCTGAGCCCCCAAGT
GAAACTGAGGTTCAGGAGACCGGCCTGTCCCTGAGTTTGAGTAGGTCCCCATGGCTGGCAGGCC
AGAGCCCCGTGCTGTGTATGTAACACAATAAACAAGCTTCTTCTTCGCAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003804638	(Get FASTA)	NCBI Sequence Viewer
	XP_008959734	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000008904
	ENSPPAP00000008904.1
	ENSPPAP00000008910.1

RefSeq Acc Id:	XP_003804638 ⟸ XM_003804590
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZVB4 (UniProtKB/TrEMBL), A0A2R8ZVC1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAEGTAVAGSGAVGGCLAKDGLQQSKCPDTTPKRRRASSLSRDAERRAYQWCREYLGGAWRRV QPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAE RSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTM ERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPEN ADSLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEA KKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQ KGQLTSVHSSS hide sequence

RefSeq Acc Id:	XP_008959734 ⟸ XM_008961486
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZVC1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAEGTAVAGSGAVGGCLAKDGLQQSKCPDTTPKRRRASSLSRDAERRAYQWCREYLGGAWRRV QPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAE RSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTM ERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGRRRHLSLLTQ DGRARGLWSEQNLTPFPQGTSCCSQSQKMLTASCWWTSSTAVITIEAKKGETLSQEEQRKLEED LLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSVHSSS hide sequence

RefSeq Acc Id:

ENSPPAP00000008910 ⟸ ENSPPAT00000031550

RefSeq Acc Id:

ENSPPAP00000008904 ⟸ ENSPPAT00000031544

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000027692	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000031544.1	UniProtKB/TrEMBL
	ENSPPAT00000031550.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.1200.10	UniProtKB/TrEMBL
InterPro	Kinase-like_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100978500	UniProtKB/TrEMBL
NCBI Gene	CHKB	ENTREZGENE
PANTHER	CHOLINE/ETHANOALAMINE KINASE	UniProtKB/TrEMBL
	PTHR22603:SF35	UniProtKB/TrEMBL
Pfam	Choline_kinase	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/TrEMBL
UniProt	A0A2R8ZVB4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZVC1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM