TGM1 (transglutaminase 1) - Rat Genome Database

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Gene: TGM1 (transglutaminase 1) Pan paniscus
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Symbol: TGM1
Name: transglutaminase 1
RGD ID: 11722222
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); protein-glutamine gamma-glutamyltransferase activity (inferred); INVOLVED IN animal organ morphogenesis (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); autosomal dominant dyskeratosis congenita 3 (ortholog); autosomal recessive congenital ichthyosis (ortholog); FOUND IN adherens junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein-glutamine gamma-glutamyltransferase K; transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,604,115 - 25,618,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,820,632 - 24,836,103 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,025,345 - 5,041,557 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,148,905 - 23,163,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,148,905 - 23,162,477 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TGM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,604,115 - 25,618,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,820,632 - 24,836,103 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,025,345 - 5,041,557 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,148,905 - 23,163,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,148,905 - 23,162,477 (-)Ensemblpanpan1.1panPan2
TGM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,249,114 - 24,263,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,249,114 - 24,264,432 (-)EnsemblGRCh38hg38GRCh38
GRCh371424,718,320 - 24,732,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,788,160 - 23,802,256 (-)NCBINCBI36Build 36hg18NCBI36
Build 341423,788,161 - 23,802,212NCBI
Celera144,582,959 - 4,597,032 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,833,089 - 4,847,573 (-)NCBIHuRef
CHM1_11424,716,943 - 24,731,017 (-)NCBICHM1_1
T2T-CHM13v2.01418,447,487 - 18,461,522 (-)NCBIT2T-CHM13v2.0
Tgm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,937,466 - 55,951,378 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,937,466 - 55,951,383 (-)EnsemblGRCm39 Ensembl
GRCm381455,700,009 - 55,713,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,700,009 - 55,713,926 (-)EnsemblGRCm38mm10GRCm38
MGSCv371456,318,846 - 56,332,329 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,654,090 - 54,667,159 (-)NCBIMGSCv36mm8
Celera1453,505,022 - 53,518,505 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Tgm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,160,985 - 33,175,632 (-)NCBIGRCr8
mRatBN7.21529,191,039 - 29,206,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,191,041 - 29,204,523 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1531,036,752 - 31,049,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,183,977 - 32,197,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,426,310 - 30,439,558 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,378,136 - 34,393,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,378,148 - 34,392,066 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,268,112 - 38,282,132 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,846,367 - 33,859,615 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,862,066 - 33,875,315 (-)NCBI
Celera1528,767,463 - 28,780,710 (-)NCBICelera
Cytogenetic Map15p13NCBI
TGM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,229,410 - 4,244,768 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,229,614 - 4,241,644 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,151,291 - 4,163,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,340,192 - 4,355,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,340,391 - 4,352,420 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,030,778 - 4,042,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,092,571 - 4,104,607 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,354,922 - 4,366,945 (-)NCBIUU_Cfam_GSD_1.0
Tgm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,082,429 - 36,096,863 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722292,143 - 306,572 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722292,999 - 306,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,029,923 - 75,047,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,030,123 - 75,045,157 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,298,974 - 80,316,080 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TGM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,231,827 - 1,248,018 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,232,004 - 1,245,462 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,916,544 - 12,930,178 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,239,904 - 8,252,541 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,239,087 - 8,252,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000035402   ⟹   ENSPPAP00000012736
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1423,148,905 - 23,162,477 (-)Ensembl
RefSeq Acc Id: XM_008961262   ⟹   XP_008959510
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,604,115 - 25,618,834 (-)NCBI
NHGRI_mPanPan11424,820,632 - 24,836,103 (-)NCBI
Mhudiblu_PPA_v0145,025,345 - 5,041,557 (-)NCBI
PanPan1.11423,148,905 - 23,163,249 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008959510 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012736.1
RefSeq Acc Id: XP_008959510   ⟸   XM_008961262
- UniProtKB: A0A2R9AAS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000012736   ⟸   ENSPPAT00000035402
Protein Domains
Transglutaminase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029548 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035402.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.260.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/TrEMBL
  Transglutaminase-like_sf UniProtKB/TrEMBL
  Transglutaminase_animal UniProtKB/TrEMBL
  Transglutaminase_AS UniProtKB/TrEMBL
  Transglutaminase_C UniProtKB/TrEMBL
  Transglutaminase_C_sf UniProtKB/TrEMBL
  Transglutaminase_N UniProtKB/TrEMBL
KEGG Report pps:100978535 UniProtKB/TrEMBL
NCBI Gene TGM1 ENTREZGENE
PANTHER PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE UniProtKB/TrEMBL
  PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE K UniProtKB/TrEMBL
Pfam Transglut_C UniProtKB/TrEMBL
  Transglut_core UniProtKB/TrEMBL
  Transglut_N UniProtKB/TrEMBL
PIRSF TGM_EBP42 UniProtKB/TrEMBL
PROSITE TRANSGLUTAMINASES UniProtKB/TrEMBL
SMART TGc UniProtKB/TrEMBL
Superfamily-SCOP SSF49309 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A2R9AAS4 ENTREZGENE, UniProtKB/TrEMBL