CD226 (CD226 molecule) - Rat Genome Database

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Gene: CD226 (CD226 molecule) Pan paniscus
Analyze
Symbol: CD226
Name: CD226 molecule
RGD ID: 11714967
Description: ENCODES a protein that exhibits cell adhesion molecule binding (inferred); identical protein binding (inferred); integrin binding (inferred); INVOLVED IN positive regulation of natural killer cell cytokine production (ortholog); positive regulation of type II interferon production (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Chronic Hepatitis C (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell surface (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD226 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21787,392,451 - 87,488,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11873,072,672 - 73,178,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01863,238,477 - 63,379,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11866,533,949 - 66,627,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1866,533,949 - 66,627,580 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CD226
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21787,392,451 - 87,488,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11873,072,672 - 73,178,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01863,238,477 - 63,379,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11866,533,949 - 66,627,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1866,533,949 - 66,627,580 (-)Ensemblpanpan1.1panPan2
CD226
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381869,853,274 - 69,961,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1869,831,158 - 69,961,803 (-)EnsemblGRCh38hg38GRCh38
GRCh371867,520,510 - 67,624,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361865,681,172 - 65,775,139 (-)NCBINCBI36Build 36hg18NCBI36
Build 341865,681,174 - 65,775,140NCBI
Celera1864,377,737 - 64,472,107 (-)NCBICelera
Cytogenetic Map18q22.2NCBI
HuRef1864,248,832 - 64,343,180 (-)NCBIHuRef
CHM1_11867,525,491 - 67,619,446 (-)NCBICHM1_1
T2T-CHM13v2.01870,070,086 - 70,220,680 (-)NCBIT2T-CHM13v2.0
Cd226
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391889,195,078 - 89,290,356 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1889,195,091 - 89,290,353 (+)EnsemblGRCm39 Ensembl
GRCm381889,176,954 - 89,272,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1889,176,967 - 89,272,229 (+)EnsemblGRCm38mm10GRCm38
MGSCv371889,366,819 - 89,439,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361889,331,620 - 89,404,520 (+)NCBIMGSCv36mm8
Celera1890,925,452 - 90,998,347 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1859.05NCBI
Cd226
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81884,723,330 - 84,819,836 (+)NCBIGRCr8
mRatBN7.21882,449,924 - 82,545,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1882,450,568 - 82,543,051 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1884,505,997 - 84,598,578 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01885,179,224 - 85,271,795 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01883,053,202 - 83,147,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01886,299,392 - 86,394,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1886,299,463 - 86,394,765 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01885,337,942 - 85,433,295 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41886,064,574 - 86,157,909 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11886,157,214 - 86,230,246 (+)NCBI
Celera1881,000,246 - 81,093,141 (+)NCBICelera
Cytogenetic Map18q13NCBI
Cd226
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540253,473,131 - 53,560,924 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540253,408,861 - 53,560,896 (-)NCBIChiLan1.0ChiLan1.0
CD226
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.118,348,628 - 8,437,520 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl18,351,207 - 8,435,145 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha19,360,824 - 9,448,915 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.018,180,313 - 8,268,617 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl18,180,904 - 8,267,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.118,201,794 - 8,289,667 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.018,162,053 - 8,249,918 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.018,372,145 - 8,460,491 (+)NCBIUU_Cfam_GSD_1.0
CD226
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1152,882,762 - 152,979,845 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11152,872,878 - 152,977,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,304,334 - 169,418,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD226
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1189,790,483 - 9,900,376 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl189,811,168 - 9,901,830 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606015,904,002 - 16,007,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd226
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480611,324,344 - 11,388,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480611,324,239 - 11,390,487 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000037910   ⟹   ENSPPAP00000015221
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1866,533,949 - 66,627,580 (-)Ensembl
RefSeq Acc Id: XM_034944014   ⟹   XP_034799905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21787,392,451 - 87,488,644 (-)NCBI
NHGRI_mPanPan11873,072,672 - 73,178,859 (-)NCBI
Mhudiblu_PPA_v01863,238,477 - 63,335,119 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034799905 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000015221.1
Reference Protein Sequences
RefSeq Acc Id: XP_034799905   ⟸   XM_034944014
RefSeq Acc Id: ENSPPAP00000015221   ⟸   ENSPPAT00000037910
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030754 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037910.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD226 UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene CD226 ENTREZGENE
PANTHER CD226 ANTIGEN UniProtKB/TrEMBL
  PTHR47011 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9AE52_PANPA UniProtKB/TrEMBL