HDAC11 (histone deacetylase 11) - Rat Genome Database

Name: HDAC11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: HDAC11 (histone deacetylase 11) Pan paniscus

Analyze

Symbol:

HDAC11

Name:

histone deacetylase 11

RGD ID:

11697643

Description:

ENCODES a protein that exhibits histone deacetylase activity (inferred); protein lysine deacetylase activity (inferred); INVOLVED IN oligodendrocyte development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN histone deacetylase complex (inferred); nucleus (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HDAC11 (histone deacetylase 11)	NCBI	Ortholog
Mus musculus (house mouse):	Hdac11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hdac11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hdac11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HDAC11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hdac11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HDAC11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HDAC11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hdac11 (histone deacetylase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	13,460,086 - 13,486,323 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	13,464,848 - 13,491,085 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	13,400,788 - 13,427,010 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	13,744,425 - 13,769,997 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	13,744,475 - 13,769,997 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

oligodendrocyte development (ISO)

Cellular Component

histone deacetylase complex (IEA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

histone deacetylase activity (IEA)

protein binding (ISO)

protein lysine deacetylase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HDAC11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	13,460,086 - 13,486,323 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	13,464,848 - 13,491,085 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	13,400,788 - 13,427,010 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	13,744,425 - 13,769,997 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	13,744,475 - 13,769,997 (+)	Ensembl	panpan1.1		panPan2

HDAC11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	13,480,306 - 13,506,416 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	13,479,724 - 13,506,424 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	13,521,806 - 13,547,916 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	13,496,824 - 13,521,834 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	13,496,823 - 13,521,834	NCBI
Celera	3	13,459,987 - 13,486,185 (+)	NCBI		Celera
Cytogenetic Map	3	p25.1	NCBI
HuRef	3	13,454,981 - 13,481,181 (+)	NCBI		HuRef
CHM1_1	3	13,471,748 - 13,497,959 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	13,480,765 - 13,506,873 (+)	NCBI		T2T-CHM13v2.0

Hdac11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	91,133,652 - 91,151,674 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	91,133,647 - 91,151,674 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	91,156,670 - 91,174,692 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	91,156,665 - 91,174,692 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	91,106,809 - 91,124,677 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	91,122,319 - 91,140,187 (+)	NCBI		MGSCv36	mm8
Celera	6	93,049,682 - 93,067,648 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	40.38	NCBI

Hdac11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	125,203,044 - 125,224,584 (+)	NCBI		GRCr8
mRatBN7.2	4	123,645,873 - 123,667,407 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	123,650,157 - 123,667,405 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	129,117,113 - 129,134,383 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	124,891,560 - 124,908,832 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	123,516,120 - 123,533,392 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	122,781,095 - 122,798,355 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	122,781,095 - 122,798,353 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	187,747,330 - 187,764,590 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	125,326,168 - 125,343,417 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	125,570,644 - 125,587,876 (+)	NCBI
Celera	4	112,570,281 - 112,587,541 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Hdac11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	12,890,879 - 12,907,749 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	12,890,939 - 12,907,749 (-)	NCBI	ChiLan1.0	ChiLan1.0

HDAC11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	3,792,832 - 3,815,922 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	3,792,693 - 3,837,192 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	3,832,891 - 3,855,869 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	3,815,086 - 3,838,045 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	3,815,104 - 3,838,043 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	3,534,218 - 3,557,209 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	3,856,940 - 3,879,907 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	3,821,892 - 3,844,896 (+)	NCBI		UU_Cfam_GSD_1.0

Hdac11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	19,513,972 - 19,542,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936898	148,891 - 177,471 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HDAC11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	70,860,658 - 70,879,856 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	70,860,650 - 70,879,863 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	78,557,476 - 78,589,847 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HDAC11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	49,470,443 - 49,497,692 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	49,471,368 - 49,498,178 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	116,999,596 - 117,027,046 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hdac11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	12,666,403 - 12,683,003 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624796	12,666,544 - 12,683,223 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024928380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034955864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034955865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000052051 ⟹ ENSPPAP00000029203

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,744,475 - 13,769,997 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052112 ⟹ ENSPPAP00000029263

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,744,602 - 13,768,265 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052115 ⟹ ENSPPAP00000029266

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,744,602 - 13,768,265 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052119 ⟹ ENSPPAP00000029270

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,744,602 - 13,768,265 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052134 ⟹ ENSPPAP00000029285

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,745,170 - 13,768,329 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052136 ⟹ ENSPPAP00000029287

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,745,170 - 13,768,265 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052138 ⟹ ENSPPAP00000029289

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,745,170 - 13,746,583 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052151 ⟹ ENSPPAP00000029302

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	13,745,581 - 13,768,059 (+)	Ensembl

RefSeq Acc Id:

XM_003826241 ⟹ XP_003826289

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	13,460,086 - 13,486,323 (+)	NCBI
NHGRI_mPanPan1	3	13,464,848 - 13,491,085 (+)	NCBI
Mhudiblu_PPA_v0	3	13,400,789 - 13,427,010 (+)	NCBI
PanPan1.1	3	13,744,475 - 13,769,997 (+)	NCBI

Sequence:

show sequence

GCCAGAGTTCTGCCCCCAGAGGACGCGGCTAAGCCCGGGGGCGTGTCCTGGGCTGGCCCCACCC
GCGCCCCGCCCCGCCCCGCCCGGTCGCGGAGCTGCGGCCAGCTTTGGGAGGGCCGGCCCCGGGA
TGCTACACACAACCCAGCTGTACCAGCATGTGCCAGAGGCACGCTGGCCAATCGTGTACTCGCC
GCGCTACAACATCACCTTCATGGGCCTGGAGAAGCTGCATCCCTTTGATGCCGGAAAATGGGGC
AAAGTGATCAATTTCCTAAAAGAAGAGAAGCTTCTGTCTGACAGCATGCTGGTGGAGGCACGGG
AGGCCTCGGAGGAGGACCTGCTGGTGGTGCACACGAGGCGCTATCTTAATGAGCTCAAGTGGTC
CTTTGCTGTTGCTACCATCACAGAAATCCCCCCCGTTATCTTCCTCCCCAACTTCCTTGTGCAG
AGGAAGGTGCTGAGGCCCCTTCGGACCCAGACAGGAGGAACCCATAAACTGGCGGGGAAGCTGG
CTGTGGAGCGAGGCTGGGCCATCAACGTGGGGGGTGGCTTCCACCACTGCTCCAGCGACCGTGG
CGGGGGCTTCTGTGCCTATGCGGACATCACGCTCGCCATCAAGTTTCTGTTTGAGCGTGTGGAG
GGCATCTCCAGGGCTACCATCATTGATCTTGATGCCCATCAGGGCAATGGGCATGAGCGAGACT
TCATGGACGACAAGCGTGTGTACATCATGGATGTCTACAACCGCCACATCTACCCCGGGGACCG
CTTTGCCAAGCAGGCCATCAGGCGGAAGGTGGAGCTGGAGTGGGGCACAGAGGATGATGAGTAC
CTGGATAAGGTGGAGAGGAACATCAAGAAATCCCTCCAGGAGCACCTGCCCGACGTGGTGGTAT
ACAATGCAGGCACCGACATCCTCGAGGGGGACCGCCTTGGGGGGCTGTCTATCAGCCCAGCGGG
CATCGTGAAGCGGGATGAGCTGGTGTTCCGGATGGTCCGTGGCCGCCGGGTGCCCATCCTTATG
GTGACCTCAGGCGGGTACCAGAAGCGCACAGCCCGCATCATTGCTGACTCCATACTTAATCTGT
TTGGCCTGGGGCTCATTGGGCCTGAGTCACCCAGCGTCTCCGCACAGAACTCAGACACACCGCT
GCTTCCCCCTGCAGTGCCCTGACCCTCGCTGCCCTGCCTGTCACGTGGCCCCGCCTATCCGCCC
CTTAGTGCTTTTTGTTTTCTAACCTCATGGGGTGGTGGAGGCAGCCTTCAGTGAGCATGGAGGG
GCAGGGCCATCCCTGGCTGGGGCCTGGAGCTGGCCCTTCCTCTACTTTTCCCTGCTGGAAGCCA
GAAGGGCTTGAGGCCTCTATGGGTGGGGGCAGAAGGCAGAGCCTGTGTCCCAGGGGGACCCACA
CGAAGTCACCAGCCCATAGGTCCAGGGAGGCAGGCAGTTAACTGAGAATCGGAGAGGACAGGCT
AGGTCCCAGGCACAGCGAGGGCCCTGGGCTTGGGGTGTTCTGGTTTTGAGAACGGCAGACCCAG
GTCAGAGTGAGGAAGCTTCCACCTCCATCCTGACTAGGCCTGCATCCTGACTGGGCCTCCCTCC
CTCCCCTTGGTCATGGGATTTGCTGCCCTCTTTGCCCCAGAGCTGAAGAGCTATAGGCGCTGGT
GTGGATGGCCCAGGAGGTGCTGGAGCTAGGCCTCCAGGTGGGTCTGGTTCCCAGGCAGCAGGTG
GGAACCCTGGGCCTGGATGTGAGGGGCGGTCAGGAAGGGGTACAGGTGGGTTCCCTCATCTGGA
GTTCCCCCTCAATAAAGCAAGGTCTGGACCTGCCTTCCCAGGCCCTTCTGTGGGGGTGAAGGTG
GGGAAGGCCTGTGGCGCCCAGATCACTGCCTTAGCAGTAGTCTTGCCTGTTCAGTGCAAGGGGC
AGGTTTTGGGGGAGGAATTCTTAGCGCAAGGACGGGCCTCAGCCCTGTCGCCTCCAGGGGGCCG
CTGACCCAGGTGGGGAGGGGGCAGAAGAAGGGTGGGGGACATGGGCAGGCCAGGCTCACAGTTG
GAAATCAGGGATGCAGGGTGGTGCCCAAGCCAGGTCCTGCAGGAACCCAGGCCCAGGGAGGGAC
CCAGACACTGGTGAGGCGGGGCAGGGGTTCCTGGAGAGAGGGCAGCGAGGATCTCTATCCTGGC
CTGGGGATTATGAACATAGGTAGCCGGGGCAGGGCCCTGGGTGGGACTGTGGCCTCCACTGGCC
TCACCAAAGTGCCTGGGCCCCAATCCTTCTCCATGCCCAGGGCCCCCAGGTGGGCCAGACCTCT
GGCCTGTTCCTCAGCCCTACTCATGGGGACATTCAGGGACCTCCAGGAAGTGGGCGGGGGAGCA
TCCACCCCTGCTAGCCAGCAGCTGTGGCCCTGATCAAATCAGGGGCTGGGGAGGGAAAGTGGGT
CCATTGAGGTGGCCCTGCTCCATCAGCCCCCTACGGGACTTGTGTTCATTACAGTGAGGGGGTG
CTCCCACTGTCTCCCGACCTCCCTAATGCTCCCTCTGCTGCAGGGAGAAGGGTTCCAAGATCAC
AAAATGTCAACAATGCTGGCCTCCTGGACCAGACCCCGAGGCTCTAACAATGCACTCTGAGATC
CCTACCCTTGCCGTTGGTCTCTGTCGCTGACTCGAGGCACCTAACATCCATTCACACCCAACAC
AGGCCAGCGACTTCTGGGGCTCAGCCACAGACATGGTTTGTCACTGTTGAGCTTCTGTTCCTAG
AGAATCCTAGAGGCTTGATTGGCCCAGGCTGCTGTGTGTGCTGGAGGCAAAGAATCCCTACCTC
CTAGGGGTGAAAGGAAATGAAAATGGAAAGTTCTTGTAGCGCAAGGCCTGACATGGGTAGCTGC
TCAATAAATGCTAGTGTGTTATTCCA

hide sequence

RefSeq Acc Id:

XM_024928380 ⟹ XP_024784148

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	13,460,091 - 13,486,323 (+)	NCBI
NHGRI_mPanPan1	3	13,464,853 - 13,491,085 (+)	NCBI
Mhudiblu_PPA_v0	3	13,400,788 - 13,427,010 (+)	NCBI
PanPan1.1	3	13,744,425 - 13,769,997 (+)	NCBI

Sequence:

show sequence

CCTGCAGGCAGGCTCTCTGTGTCGCAACACTGGCGGGGCGGGCCAAATCGGCCAGAGTTCTGCC
CCCAGAGGACGCGGCTAAGCCCGGGGGCGTGTCCTGGGCTGGCCCCACCCGCGCCCCGCCCCGC
CCCGCCCGGTCGCGGAGCTGCGGCCAGCTTTGGGAGGGCCGGCCCCGGGATGCTACACACAACC
CAGCTGTACCAGCATGTGCCAGAGGCACGCTGGCCAATCGTGTACTCGCCGCGCTACAACATCA
CCTTCATGGGCCTGGAGAAGCTGCATCCCTTTGATGCCGGAAAATGGGGCAAAGTGATCAATTT
CCTAAAAGAAGAGAAGCTTCTGTCTGACAGCATGCTGGTGGAGGCACGGGAGGCCTCGGAGGAG
GACCTGCTGGTGGTGCACACGAGGCGCTATCTTAATGAGCTCAAGTTTCTGTTTGAGCGTGTGG
AGGGCATCTCCAGGGCTACCATCATTGATCTTGATGCCCATCAGGGCAATGGGCATGAGCGAGA
CTTCATGGACGACAAGCGTGTGTACATCATGGATGTCTACAACCGCCACATCTACCCCGGGGAC
CGCTTTGCCAAGCAGGCCATCAGGCGGAAGGTGGAGCTGGAGTGGGGCACAGAGGATGATGAGT
ACCTGGATAAGGTGGAGAGGAACATCAAGAAATCCCTCCAGGAGCACCTGCCCGACGTGGTGGT
ATACAATGCAGGCACCGACATCCTCGAGGGGGACCGCCTTGGGGGGCTGTCTATCAGCCCAGCG
GGCATCGTGAAGCGGGATGAGCTGGTGTTCCGGATGGTCCGTGGCCGCCGGGTGCCCATCCTTA
TGGTGACCTCAGGCGGGTACCAGAAGCGCACAGCCCGCATCATTGCTGACTCCATACTTAATCT
GTTTGGCCTGGGGCTCATTGGGCCTGAGTCACCCAGCGTCTCCGCACAGAACTCAGACACACCG
CTGCTTCCCCCTGCAGTGCCCTGACCCTCGCTGCCCTGCCTGTCACGTGGCCCCGCCTATCCGC
CCCTTAGTGCTTTTTGTTTTCTAACCTCATGGGGTGGTGGAGGCAGCCTTCAGTGAGCATGGAG
GGGCAGGGCCATCCCTGGCTGGGGCCTGGAGCTGGCCCTTCCTCTACTTTTCCCTGCTGGAAGC
CAGAAGGGCTTGAGGCCTCTATGGGTGGGGGCAGAAGGCAGAGCCTGTGTCCCAGGGGGACCCA
CACGAAGTCACCAGCCCATAGGTCCAGGGAGGCAGGCAGTTAACTGAGAATCGGAGAGGACAGG
CTAGGTCCCAGGCACAGCGAGGGCCCTGGGCTTGGGGTGTTCTGGTTTTGAGAACGGCAGACCC
AGGTCAGAGTGAGGAAGCTTCCACCTCCATCCTGACTAGGCCTGCATCCTGACTGGGCCTCCCT
CCCTCCCCTTGGTCATGGGATTTGCTGCCCTCTTTGCCCCAGAGCTGAAGAGCTATAGGCGCTG
GTGTGGATGGCCCAGGAGGTGCTGGAGCTAGGCCTCCAGGTGGGTCTGGTTCCCAGGCAGCAGG
TGGGAACCCTGGGCCTGGATGTGAGGGGCGGTCAGGAAGGGGTACAGGTGGGTTCCCTCATCTG
GAGTTCCCCCTCAATAAAGCAAGGTCTGGACCTGCCTTCCCAGGCCCTTCTGTGGGGGTGAAGG
TGGGGAAGGCCTGTGGCGCCCAGATCACTGCCTTAGCAGTAGTCTTGCCTGTTCAGTGCAAGGG
GCAGGTTTTGGGGGAGGAATTCTTAGCGCAAGGACGGGCCTCAGCCCTGTCGCCTCCAGGGGGC
CGCTGACCCAGGTGGGGAGGGGGCAGAAGAAGGGTGGGGGACATGGGCAGGCCAGGCTCACAGT
TGGAAATCAGGGATGCAGGGTGGTGCCCAAGCCAGGTCCTGCAGGAACCCAGGCCCAGGGAGGG
ACCCAGACACTGGTGAGGCGGGGCAGGGGTTCCTGGAGAGAGGGCAGCGAGGATCTCTATCCTG
GCCTGGGGATTATGAACATAGGTAGCCGGGGCAGGGCCCTGGGTGGGACTGTGGCCTCCACTGG
CCTCACCAAAGTGCCTGGGCCCCAATCCTTCTCCATGCCCAGGGCCCCCAGGTGGGCCAGACCT
CTGGCCTGTTCCTCAGCCCTACTCATGGGGACATTCAGGGACCTCCAGGAAGTGGGCGGGGGAG
CATCCACCCCTGCTAGCCAGCAGCTGTGGCCCTGATCAAATCAGGGGCTGGGGAGGGAAAGTGG
GTCCATTGAGGTGGCCCTGCTCCATCAGCCCCCTACGGGACTTGTGTTCATTACAGTGAGGGGG
TGCTCCCACTGTCTCCCGACCTCCCTAATGCTCCCTCTGCTGCAGGGAGAAGGGTTCCAAGATC
ACAAAATGTCAACAATGCTGGCCTCCTGGACCAGACCCCGAGGCTCTAACAATGCACTCTGAGA
TCCCTACCCTTGCCGTTGGTCTCTGTCGCTGACTCGAGGCACCTAACATCCATTCACACCCAAC
ACAGGCCAGCGACTTCTGGGGCTCAGCCACAGACATGGTTTGTCACTGTTGAGCTTCTGTTCCT
AGAGAATCCTAGAGGCTTGATTGGCCCAGGCTGCTGTGTGTGCTGGAGGCAAAGAATCCCTACC
TCCTAGGGGTGAAAGGAAATGAAAATGGAAAGTTCTTGTAGCGCAAGGCCTGACATGGGTAGCT
GCTCAATAAATGCTAGTGTGTTATTCCA

hide sequence

RefSeq Acc Id:

XM_034955864 ⟹ XP_034811755

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	13,460,261 - 13,486,323 (+)	NCBI
NHGRI_mPanPan1	3	13,465,035 - 13,491,085 (+)	NCBI
Mhudiblu_PPA_v0	3	13,400,985 - 13,427,010 (+)	NCBI

RefSeq Acc Id:

XM_034955865 ⟹ XP_034811756

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	13,460,642 - 13,486,323 (+)	NCBI
NHGRI_mPanPan1	3	13,465,401 - 13,491,085 (+)	NCBI
Mhudiblu_PPA_v0	3	13,401,338 - 13,427,010 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003826289	(Get FASTA)	NCBI Sequence Viewer
	XP_024784148	(Get FASTA)	NCBI Sequence Viewer
	XP_034811755	(Get FASTA)	NCBI Sequence Viewer
	XP_034811756	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000029203.1
	ENSPPAP00000029263.1
	ENSPPAP00000029266.1
	ENSPPAP00000029270.1
	ENSPPAP00000029285.1
	ENSPPAP00000029287.1
	ENSPPAP00000029289.1
	ENSPPAP00000029302.1

RefSeq Acc Id:

XP_003826289 ⟸ XM_003826241

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLHTTQLYQHVPEARWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAR
EASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTHKLAGKL
AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERD
FMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVV
YNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNL
FGLGLIGPESPSVSAQNSDTPLLPPAVP

hide sequence

RefSeq Acc Id:	XP_024784148 ⟸ XM_024928380
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BIU1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLHTTQLYQHVPEARWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAR EASEEDLLVVHTRRYLNELKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRH IYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGL SISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQ NSDTPLLPPAVP hide sequence

RefSeq Acc Id:	XP_034811755 ⟸ XM_034955864
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BIP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034811756 ⟸ XM_034955865
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BIP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000029203 ⟸ ENSPPAT00000052051

RefSeq Acc Id:

ENSPPAP00000029302 ⟸ ENSPPAT00000052151

RefSeq Acc Id:

ENSPPAP00000029270 ⟸ ENSPPAT00000052119

RefSeq Acc Id:

ENSPPAP00000029266 ⟸ ENSPPAT00000052115

RefSeq Acc Id:

ENSPPAP00000029263 ⟸ ENSPPAT00000052112

RefSeq Acc Id:

ENSPPAP00000029289 ⟸ ENSPPAT00000052138

RefSeq Acc Id:

ENSPPAP00000029287 ⟸ ENSPPAT00000052136

RefSeq Acc Id:

ENSPPAP00000029285 ⟸ ENSPPAT00000052134

Protein Domains

Histone deacetylase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037567	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000052051.1	UniProtKB/TrEMBL
	ENSPPAT00000052112.1	UniProtKB/TrEMBL
	ENSPPAT00000052115.1	UniProtKB/TrEMBL
	ENSPPAT00000052119.1	UniProtKB/TrEMBL
	ENSPPAT00000052134.1	UniProtKB/TrEMBL
	ENSPPAT00000052136.1	UniProtKB/TrEMBL
	ENSPPAT00000052138.1	UniProtKB/TrEMBL
	ENSPPAT00000052151.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.800.20	UniProtKB/TrEMBL
InterPro	HDAC_classIV	UniProtKB/TrEMBL
	His_deacetylse	UniProtKB/TrEMBL
	His_deacetylse_dom	UniProtKB/TrEMBL
	His_deacetylse_dom_sf	UniProtKB/TrEMBL
	Ureohydrolase_dom_sf	UniProtKB/TrEMBL
NCBI Gene	HDAC11	ENTREZGENE
PANTHER	HISTONE DEACETYLASE 11	UniProtKB/TrEMBL
	HISTONE DEACETYLASE HDAC1-RELATED	UniProtKB/TrEMBL
Pfam	Hist_deacetyl	UniProtKB/TrEMBL
PRINTS	HDASUPER	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52768	UniProtKB/TrEMBL
UniProt	A0A2R9BHY7_PANPA	UniProtKB/TrEMBL
	A0A2R9BI03_PANPA	UniProtKB/TrEMBL
	A0A2R9BI12_PANPA	UniProtKB/TrEMBL
	A0A2R9BIP3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BIU1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BLK7_PANPA	UniProtKB/TrEMBL
	A0A2R9BLM4_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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